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Copper in PDB 4d7u: The Structure of the Catalytic Domain of NCLPMO9C From the Filamentous Fungus Neurospora Crassa

Protein crystallography data

The structure of The Structure of the Catalytic Domain of NCLPMO9C From the Filamentous Fungus Neurospora Crassa, PDB code: 4d7u was solved by A.S.Borisova, T.Isaksen, G.Mathiesen, M.Sorlie, M.Sandgren, V.G.H.Eijsink, M.Dimarogona, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 64.81 / 1.56
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 44.258, 66.755, 66.077, 90.00, 101.26, 90.00
R / Rfree (%) 15.6 / 18.8

Copper Binding Sites:

The binding sites of Copper atom in the The Structure of the Catalytic Domain of NCLPMO9C From the Filamentous Fungus Neurospora Crassa (pdb code 4d7u). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the The Structure of the Catalytic Domain of NCLPMO9C From the Filamentous Fungus Neurospora Crassa, PDB code: 4d7u:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in 4d7u

Go back to Copper Binding Sites List in 4d7u
Copper binding site 1 out of 2 in the The Structure of the Catalytic Domain of NCLPMO9C From the Filamentous Fungus Neurospora Crassa


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of The Structure of the Catalytic Domain of NCLPMO9C From the Filamentous Fungus Neurospora Crassa within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu300

b:8.7
occ:0.80
NE2 A:HIS83 2.0 10.6 1.0
ND1 A:HIS1 2.0 9.5 1.0
N A:HIS1 2.3 9.6 1.0
CD2 A:HIS83 2.9 10.7 1.0
CG A:HIS1 3.0 9.6 1.0
CE1 A:HIS1 3.0 9.7 1.0
CE1 A:HIS83 3.0 10.6 1.0
OH A:TYR166 3.0 7.8 1.0
CA A:HIS1 3.2 9.6 1.0
CB A:HIS1 3.3 9.6 1.0
OE1 A:GLN164 3.6 8.9 1.0
O A:HOH2001 4.0 14.9 1.0
CZ A:TYR166 4.0 7.6 1.0
CG A:HIS83 4.0 10.4 1.0
ND1 A:HIS83 4.1 10.5 1.0
NE2 A:HIS1 4.1 9.7 1.0
CD2 A:HIS1 4.1 9.7 1.0
C A:HIS1 4.5 9.3 1.0
CE2 A:TYR166 4.6 7.6 1.0
CD A:GLN164 4.7 8.8 1.0
CE1 A:TYR166 4.8 7.6 1.0
CE1 A:HIS155 4.9 7.9 1.0
O A:HOH2133 4.9 38.9 1.0
O A:HIS1 5.0 9.7 1.0
NE2 A:HIS155 5.0 8.0 1.0

Copper binding site 2 out of 2 in 4d7u

Go back to Copper Binding Sites List in 4d7u
Copper binding site 2 out of 2 in the The Structure of the Catalytic Domain of NCLPMO9C From the Filamentous Fungus Neurospora Crassa


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of The Structure of the Catalytic Domain of NCLPMO9C From the Filamentous Fungus Neurospora Crassa within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu300

b:7.3
occ:0.80
NE2 B:HIS83 2.0 8.7 1.0
ND1 B:HIS1 2.0 8.4 1.0
N B:HIS1 2.3 8.8 1.0
CD2 B:HIS83 2.9 8.8 1.0
OH B:TYR166 3.0 7.3 1.0
CG B:HIS1 3.0 8.6 1.0
CE1 B:HIS1 3.0 8.4 1.0
CE1 B:HIS83 3.0 8.7 1.0
CA B:HIS1 3.2 8.8 1.0
CB B:HIS1 3.3 8.7 1.0
OE1 B:GLN164 3.8 7.8 1.0
CZ B:TYR166 3.9 7.3 1.0
O B:HOH2001 4.0 12.4 1.0
CG B:HIS83 4.0 8.8 1.0
ND1 B:HIS83 4.1 8.8 1.0
NE2 B:HIS1 4.1 8.5 1.0
CD2 B:HIS1 4.1 8.5 1.0
C B:HIS1 4.5 8.7 1.0
CE2 B:TYR166 4.6 7.3 1.0
CE1 B:TYR166 4.7 7.3 1.0
CE1 B:HIS155 4.9 7.7 1.0
CD B:GLN164 4.9 7.7 1.0
NE2 B:HIS155 4.9 7.7 1.0
O B:HIS1 4.9 8.8 1.0

Reference:

A.S.Borisova, T.Isaksen, M.Dimarogona, A.A.Kognole, G.Mathiesen, A.Varnai, A.K.Rohr, C.Payne, M.Sorlie, M.Sandgren, V.G.H.Eijsink, M.Sorlie. Structural and Functional Characterization of A Lytic Polysaccharide Monooxygenase with Broad Substrate Specificity J.Biol.Chem. V. 290 22955 2015.
ISSN: ISSN 0021-9258
PubMed: 26178376
DOI: 10.1074/JBC.M115.660183
Page generated: Sun Dec 13 11:13:51 2020

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