Copper in PDB 4bz4: Cora Is A Surface-Associated Copper-Binding Protein Important in Methylomicrobium Album BG8 Copper Acquisition

The structure of Cora Is A Surface-Associated Copper-Binding Protein Important in Methylomicrobium Album BG8 Copper Acquisition, PDB code: 4bz4 was solved by K.A.Johnson, T.Ve, R.B.Pedersen, J.R.Lillehaug, H.B.Jensen, R.Helland, O.A.Karlsen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30 / 1.60
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	73.840, 113.170, 81.490, 90.00, 104.51, 90.00
R / Rfree (%)	15.753 / 18.809

The structure of Cora Is A Surface-Associated Copper-Binding Protein Important in Methylomicrobium Album BG8 Copper Acquisition also contains other interesting chemical elements:

Calcium

(Ca)

6 atoms

The binding sites of Copper atom in the Cora Is A Surface-Associated Copper-Binding Protein Important in Methylomicrobium Album BG8 Copper Acquisition (pdb code 4bz4). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 6 binding sites of Copper where determined in the Cora Is A Surface-Associated Copper-Binding Protein Important in Methylomicrobium Album BG8 Copper Acquisition, PDB code: 4bz4:
Jump to Copper binding site number: 1; 2; 3; 4; 5; 6;

Copper binding site 1 out of 6 in the Cora Is A Surface-Associated Copper-Binding Protein Important in Methylomicrobium Album BG8 Copper Acquisition


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Cora Is A Surface-Associated Copper-Binding Protein Important in Methylomicrobium Album BG8 Copper Acquisition within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu1232 b:20.9 occ:1.00 ND1 A:HIS64 2.0 19.5 1.0 ND1 A:HIS114 2.1 19.6 1.0 O A:HOH2051 2.5 30.2 1.0 N1 A:KYN62 2.8 18.0 1.0 CE1 A:HIS64 2.9 19.3 1.0 CE1 A:HIS114 3.0 22.1 1.0 CG A:HIS64 3.1 16.9 1.0 CG A:HIS114 3.1 19.8 1.0 CB A:HIS114 3.4 17.8 1.0 CB A:HIS64 3.5 16.2 1.0 CA A:HIS114 3.9 15.1 1.0 NE2 A:HIS64 4.0 19.8 1.0 CD2 A:HIS64 4.1 17.9 1.0 N A:HIS64 4.1 12.5 1.0 NE2 A:HIS114 4.2 22.7 1.0 O A:HOH2052 4.2 39.8 1.0 CD2 A:HIS114 4.2 23.8 1.0 CG A:KYN62 4.3 16.0 1.0 O A:HIS114 4.3 13.2 1.0 O2 A:KYN62 4.4 12.9 1.0 CA A:HIS64 4.5 14.2 1.0 C A:HIS114 4.6 13.8 1.0 CB A:THR63 4.7 11.1 1.0

Copper binding site 2 out of 6 in the Cora Is A Surface-Associated Copper-Binding Protein Important in Methylomicrobium Album BG8 Copper Acquisition


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Cora Is A Surface-Associated Copper-Binding Protein Important in Methylomicrobium Album BG8 Copper Acquisition within 5.0Å range: probe atom residue distance (Å) B Occ B:Cu1232 b:13.7 occ:1.00 ND1 B:HIS64 2.0 12.6 1.0 ND1 B:HIS114 2.1 13.1 1.0 O B:HOH2046 2.4 16.0 1.0 N1 B:KYN62 2.8 14.8 1.0 CE1 B:HIS64 2.9 12.7 1.0 CE1 B:HIS114 3.0 11.6 1.0 CG B:HIS64 3.1 11.3 1.0 CG B:HIS114 3.1 10.4 1.0 CB B:HIS114 3.4 9.2 1.0 CB B:HIS64 3.5 10.5 1.0 O B:HOH2093 3.8 20.7 1.0 CA B:HIS114 3.8 9.3 1.0 N B:HIS64 4.0 9.8 1.0 NE2 B:HIS64 4.1 12.7 1.0 NE2 B:HIS114 4.1 12.5 1.0 CD2 B:HIS64 4.1 12.1 1.0 CD2 B:HIS114 4.2 12.1 1.0 O B:HIS114 4.3 9.6 1.0 CG B:KYN62 4.3 14.8 1.0 O2 B:KYN62 4.4 12.2 1.0 CA B:HIS64 4.4 9.9 1.0 CB B:THR63 4.5 9.0 1.0 C B:HIS114 4.6 9.0 1.0 C B:THR63 4.9 10.1 1.0 N B:HIS114 5.0 9.7 1.0

Copper binding site 3 out of 6 in the Cora Is A Surface-Associated Copper-Binding Protein Important in Methylomicrobium Album BG8 Copper Acquisition


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Cora Is A Surface-Associated Copper-Binding Protein Important in Methylomicrobium Album BG8 Copper Acquisition within 5.0Å range: probe atom residue distance (Å) B Occ C:Cu1232 b:19.1 occ:1.00 ND1 C:HIS64 2.0 15.0 1.0 ND1 C:HIS114 2.1 17.3 1.0 O C:HOH2054 2.6 22.0 1.0 N1 C:KYN62 2.9 17.5 1.0 CE1 C:HIS64 2.9 16.6 1.0 CG C:HIS64 3.0 15.6 1.0 CE1 C:HIS114 3.0 20.7 1.0 CG C:HIS114 3.1 16.3 1.0 CB C:HIS64 3.4 13.5 1.0 CB C:HIS114 3.4 14.1 1.0 CA C:HIS114 3.9 11.7 1.0 N C:HIS64 4.0 10.3 1.0 NE2 C:HIS64 4.0 16.8 1.0 CD2 C:HIS64 4.1 16.5 1.0 NE2 C:HIS114 4.2 22.1 1.0 CD2 C:HIS114 4.2 19.8 1.0 CG C:KYN62 4.3 14.7 1.0 O C:HIS114 4.3 10.7 1.0 CA C:HIS64 4.4 11.8 1.0 O2 C:KYN62 4.4 12.1 1.0 C C:HIS114 4.6 10.6 1.0 CB C:THR63 4.7 11.3 1.0 C C:THR63 5.0 11.7 1.0

Copper binding site 4 out of 6 in the Cora Is A Surface-Associated Copper-Binding Protein Important in Methylomicrobium Album BG8 Copper Acquisition


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Cora Is A Surface-Associated Copper-Binding Protein Important in Methylomicrobium Album BG8 Copper Acquisition within 5.0Å range: probe atom residue distance (Å) B Occ D:Cu1232 b:18.7 occ:1.00 ND1 D:HIS64 2.0 15.7 1.0 ND1 D:HIS114 2.1 18.0 1.0 O D:HOH2053 2.4 24.0 1.0 CE1 D:HIS64 2.9 16.3 1.0 N1 D:KYN62 2.9 15.3 1.0 CE1 D:HIS114 3.0 20.1 1.0 CG D:HIS64 3.0 14.6 1.0 CG D:HIS114 3.1 17.2 1.0 CB D:HIS114 3.4 14.0 1.0 CB D:HIS64 3.5 13.6 1.0 CA D:HIS114 3.9 12.5 1.0 NE2 D:HIS64 4.0 17.5 1.0 N D:HIS64 4.1 11.9 1.0 CD2 D:HIS64 4.1 14.3 1.0 NE2 D:HIS114 4.2 20.4 1.0 CD2 D:HIS114 4.2 18.7 1.0 O D:HIS114 4.3 10.6 1.0 CG D:KYN62 4.3 14.6 1.0 CA D:HIS64 4.4 13.1 1.0 O2 D:KYN62 4.5 11.2 1.0 C D:HIS114 4.6 11.3 1.0 CB D:THR63 4.7 10.5 1.0

Copper binding site 5 out of 6 in the Cora Is A Surface-Associated Copper-Binding Protein Important in Methylomicrobium Album BG8 Copper Acquisition


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 5 of Cora Is A Surface-Associated Copper-Binding Protein Important in Methylomicrobium Album BG8 Copper Acquisition within 5.0Å range: probe atom residue distance (Å) B Occ E:Cu1232 b:14.3 occ:1.00 ND1 E:HIS64 2.0 11.9 1.0 ND1 E:HIS114 2.0 13.6 1.0 O E:HOH2065 2.4 21.1 1.0 N1 E:KYN62 2.9 15.3 1.0 CE1 E:HIS64 2.9 11.3 1.0 CG E:HIS114 3.0 10.9 1.0 CE1 E:HIS114 3.0 12.2 1.0 CG E:HIS64 3.1 11.9 1.0 CB E:HIS114 3.3 11.7 1.0 CB E:HIS64 3.5 11.3 1.0 CA E:HIS114 3.8 9.7 1.0 N E:HIS64 4.0 9.2 1.0 NE2 E:HIS64 4.1 12.2 1.0 NE2 E:HIS114 4.1 13.2 1.0 CD2 E:HIS114 4.1 13.3 1.0 CD2 E:HIS64 4.1 11.7 1.0 O E:HIS114 4.2 9.4 1.0 CG E:KYN62 4.3 16.1 1.0 O E:HOH2113 4.4 20.7 1.0 CA E:HIS64 4.4 10.1 1.0 O2 E:KYN62 4.5 11.0 1.0 CB E:THR63 4.5 7.5 1.0 C E:HIS114 4.5 9.2 1.0 O E:HOH2042 4.7 25.2 1.0 CG2 E:THR63 4.9 7.1 1.0 C E:THR63 4.9 8.8 1.0 N E:HIS114 4.9 10.5 1.0

Copper binding site 6 out of 6 in the Cora Is A Surface-Associated Copper-Binding Protein Important in Methylomicrobium Album BG8 Copper Acquisition


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 6 of Cora Is A Surface-Associated Copper-Binding Protein Important in Methylomicrobium Album BG8 Copper Acquisition within 5.0Å range: probe atom residue distance (Å) B Occ F:Cu1232 b:18.4 occ:1.00 ND1 F:HIS64 2.0 14.8 1.0 ND1 F:HIS114 2.1 16.2 1.0 O F:HOH2055 2.5 21.3 1.0 CE1 F:HIS64 2.9 15.0 1.0 N1 F:KYN62 2.9 16.6 1.0 CE1 F:HIS114 3.0 18.9 1.0 CG F:HIS64 3.0 12.1 1.0 CG F:HIS114 3.1 15.3 1.0 CB F:HIS114 3.5 13.3 1.0 CB F:HIS64 3.5 11.9 1.0 CA F:HIS114 3.9 11.4 1.0 NE2 F:HIS64 4.0 15.0 1.0 N F:HIS64 4.0 9.3 1.0 CD2 F:HIS64 4.1 13.7 1.0 NE2 F:HIS114 4.1 21.4 1.0 CD2 F:HIS114 4.2 18.3 1.0 O F:HIS114 4.3 10.8 1.0 CG F:KYN62 4.3 14.2 1.0 CA F:HIS64 4.4 9.9 1.0 O2 F:KYN62 4.4 10.0 1.0 C F:HIS114 4.6 10.8 1.0 CB F:THR63 4.7 8.8 1.0 C F:THR63 5.0 8.5 1.0

K.A.Johnson, T.Ve, O.Larsen, R.B.Pedersen, J.R.Lillehaug, H.B.Jensen, R.Helland, O.A.Karlsen. Cora Is A Copper Repressible Surface-Associated Copper(I)- Binding Protein Produced in Methylomicrobium Album BG8. Plos One V. 9 87750 2014.
ISSN: ISSN 1932-6203
PubMed: 24498370
DOI: 10.1371/JOURNAL.PONE.0087750