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Copper in PDB 4a2d: Coriolopsis Gallica Laccase T2 Copper Depleted at pH 4.5

Enzymatic activity of Coriolopsis Gallica Laccase T2 Copper Depleted at pH 4.5

All present enzymatic activity of Coriolopsis Gallica Laccase T2 Copper Depleted at pH 4.5:
1.10.3.2;

Protein crystallography data

The structure of Coriolopsis Gallica Laccase T2 Copper Depleted at pH 4.5, PDB code: 4a2d was solved by E.De La Mora, B.Valderrama, E.Horjales, E.Rudino-Pinera, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 75.76 / 2.30
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 56.020, 85.390, 151.530, 90.00, 90.00, 90.00
R / Rfree (%) 19.3 / 22.8

Copper Binding Sites:

The binding sites of Copper atom in the Coriolopsis Gallica Laccase T2 Copper Depleted at pH 4.5 (pdb code 4a2d). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 3 binding sites of Copper where determined in the Coriolopsis Gallica Laccase T2 Copper Depleted at pH 4.5, PDB code: 4a2d:
Jump to Copper binding site number: 1; 2; 3;

Copper binding site 1 out of 3 in 4a2d

Go back to Copper Binding Sites List in 4a2d
Copper binding site 1 out of 3 in the Coriolopsis Gallica Laccase T2 Copper Depleted at pH 4.5


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Coriolopsis Gallica Laccase T2 Copper Depleted at pH 4.5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu1518

b:43.9
occ:0.34
ND1 A:HIS415 2.0 32.3 1.0
SG A:CYS471 2.2 36.8 1.0
ND1 A:HIS476 2.6 58.1 1.0
CE1 A:HIS415 2.9 33.1 1.0
CG A:HIS415 3.1 29.8 1.0
CD1 A:ILE473 3.2 45.4 1.0
CG A:HIS476 3.4 56.5 1.0
CB A:HIS415 3.5 27.0 1.0
CE1 A:HIS476 3.5 59.1 1.0
CB A:HIS476 3.7 54.6 1.0
CB A:ILE473 3.7 47.6 1.0
CB A:CYS471 3.7 37.4 1.0
CG1 A:ILE473 3.8 47.3 1.0
CA A:HIS415 4.0 26.6 1.0
CD2 A:PHE481 4.0 32.9 1.0
NE2 A:HIS415 4.0 32.9 1.0
CD2 A:HIS415 4.1 31.5 1.0
CE2 A:PHE481 4.3 33.2 1.0
CD A:PRO416 4.5 24.7 1.0
CD2 A:HIS476 4.5 58.1 1.0
NE2 A:HIS476 4.5 58.9 1.0
CG2 A:ILE473 4.6 47.2 1.0
N A:ILE473 4.8 46.2 1.0
CA A:ILE473 4.8 47.6 1.0
O A:GLY412 4.8 32.5 1.0
O A:ILE473 4.8 48.4 1.0
C A:HIS415 4.9 25.7 1.0
CA A:CYS471 5.0 37.3 1.0
N A:HIS415 5.0 26.8 1.0

Copper binding site 2 out of 3 in 4a2d

Go back to Copper Binding Sites List in 4a2d
Copper binding site 2 out of 3 in the Coriolopsis Gallica Laccase T2 Copper Depleted at pH 4.5


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Coriolopsis Gallica Laccase T2 Copper Depleted at pH 4.5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu1519

b:34.9
occ:0.79
NE2 A:HIS470 1.8 37.2 1.0
NE2 A:HIS420 2.1 17.8 1.0
NE2 A:HIS132 2.3 25.5 1.0
CE1 A:HIS470 2.6 37.3 1.0
CD2 A:HIS470 2.8 34.5 1.0
CE1 A:HIS420 3.0 16.9 1.0
CD2 A:HIS132 3.3 25.7 1.0
CD2 A:HIS420 3.3 18.3 1.0
CE1 A:HIS132 3.3 23.9 1.0
CD2 A:HIS418 3.6 28.9 1.0
ND1 A:HIS470 3.8 36.0 1.0
CG A:HIS470 3.9 33.7 1.0
ND1 A:HIS420 4.1 17.6 1.0
NE2 A:HIS472 4.3 43.0 1.0
CG A:HIS420 4.3 19.0 1.0
CD2 A:HIS472 4.4 43.4 1.0
ND1 A:HIS132 4.4 26.1 1.0
CG A:HIS132 4.4 24.8 1.0
NE2 A:HIS418 4.4 29.5 1.0
CU A:CU1520 4.5 36.9 0.7
CG A:HIS418 4.6 26.8 1.0
CD2 A:PHE468 4.6 21.9 1.0
CD2 A:HIS85 4.6 22.5 1.0
CB A:PHE468 4.6 22.9 1.0
NE2 A:HIS85 4.7 22.1 1.0
CB A:HIS418 4.9 23.7 1.0

Copper binding site 3 out of 3 in 4a2d

Go back to Copper Binding Sites List in 4a2d
Copper binding site 3 out of 3 in the Coriolopsis Gallica Laccase T2 Copper Depleted at pH 4.5


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Coriolopsis Gallica Laccase T2 Copper Depleted at pH 4.5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu1520

b:36.9
occ:0.66
NE2 A:HIS472 2.2 43.0 1.0
ND1 A:HIS87 2.2 25.5 1.0
NE2 A:HIS130 2.2 23.4 1.0
CE1 A:HIS472 2.9 43.4 1.0
CE1 A:HIS87 3.1 26.9 1.0
CE1 A:HIS130 3.1 20.9 1.0
CD2 A:HIS85 3.2 22.5 1.0
CG A:HIS87 3.2 24.1 1.0
CD2 A:HIS130 3.3 22.2 1.0
CD2 A:HIS472 3.4 43.4 1.0
NE2 A:HIS85 3.6 22.1 1.0
CB A:HIS87 3.6 22.7 1.0
CZ2 A:TRP128 3.9 18.4 1.0
CD2 A:HIS418 4.0 28.9 1.0
ND1 A:HIS472 4.1 43.2 1.0
NE2 A:HIS418 4.2 29.5 1.0
CE2 A:TRP128 4.2 20.1 1.0
NE2 A:HIS87 4.2 25.5 1.0
ND1 A:HIS130 4.2 22.1 1.0
NE1 A:TRP128 4.3 20.9 1.0
CD2 A:HIS87 4.3 25.1 1.0
CG A:HIS472 4.4 43.6 1.0
CG A:HIS130 4.4 21.3 1.0
CB A:ALA261 4.4 17.8 1.0
CG A:HIS85 4.4 21.5 1.0
CU A:CU1519 4.5 34.9 0.8
CH2 A:TRP128 4.6 18.0 1.0
CA A:HIS87 4.7 22.8 1.0
CG A:HIS418 4.9 26.8 1.0
CE1 A:HIS85 4.9 20.6 1.0
CD2 A:HIS132 5.0 25.7 1.0

Reference:

E.De La Mora, J.E.Lovett, C.F.Blanford, E.F.Garman, B.Valderrama, E.Rudino-Pinera. Structural Changes Caused By Radiation-Induced Reduction and Radiolysis: the Effect of X-Ray Absorbed Dose in A Fungal Multicopper Oxidase Acta Crystallogr.,Sect.D V. 68 564 2012.
ISSN: ISSN 0907-4449
PubMed: 22525754
DOI: 10.1107/S0907444912005343
Page generated: Sun Dec 13 11:13:11 2020

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