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Copper in PDB 3x3y: Copper Amine Oxidase From Arthrobacter Globiformis Anaerobically Reduced By Histamine

Enzymatic activity of Copper Amine Oxidase From Arthrobacter Globiformis Anaerobically Reduced By Histamine

All present enzymatic activity of Copper Amine Oxidase From Arthrobacter Globiformis Anaerobically Reduced By Histamine:
1.4.3.21;

Protein crystallography data

The structure of Copper Amine Oxidase From Arthrobacter Globiformis Anaerobically Reduced By Histamine, PDB code: 3x3y was solved by T.Okajima, S.Nakanishi, T.Murakawa, M.Kataoka, H.Hayashi, A.Hamaguchi, T.Nakai, Y.Kawano, H.Yamaguchi, K.Tanizawa, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.46 / 1.50
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 193.471, 63.247, 157.906, 90.00, 117.73, 90.00
R / Rfree (%) 16.2 / 17.7

Other elements in 3x3y:

The structure of Copper Amine Oxidase From Arthrobacter Globiformis Anaerobically Reduced By Histamine also contains other interesting chemical elements:

Potassium (K) 2 atoms
Sodium (Na) 2 atoms

Copper Binding Sites:

The binding sites of Copper atom in the Copper Amine Oxidase From Arthrobacter Globiformis Anaerobically Reduced By Histamine (pdb code 3x3y). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the Copper Amine Oxidase From Arthrobacter Globiformis Anaerobically Reduced By Histamine, PDB code: 3x3y:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in 3x3y

Go back to Copper Binding Sites List in 3x3y
Copper binding site 1 out of 2 in the Copper Amine Oxidase From Arthrobacter Globiformis Anaerobically Reduced By Histamine


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Copper Amine Oxidase From Arthrobacter Globiformis Anaerobically Reduced By Histamine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu701

b:11.5
occ:1.00
NE2 A:HIS433 2.0 8.9 1.0
ND1 A:HIS592 2.0 11.0 1.0
NE2 A:HIS431 2.1 8.4 1.0
OH A:TYQ382 2.7 15.7 1.0
CE1 A:HIS433 3.0 9.8 1.0
CD2 A:HIS433 3.0 8.9 1.0
CG A:HIS592 3.0 11.2 1.0
CE1 A:HIS592 3.0 13.2 1.0
CD2 A:HIS431 3.0 9.3 1.0
CE1 A:HIS431 3.0 8.5 1.0
CB A:HIS592 3.3 10.4 1.0
CZ A:TYQ382 3.5 17.0 1.0
O A:HOH1421 3.6 25.1 1.0
N5 A:TYQ382 4.0 33.8 1.0
ND1 A:HIS433 4.1 9.3 1.0
NE2 A:HIS592 4.1 10.0 1.0
CG A:HIS433 4.1 7.5 1.0
CD2 A:HIS592 4.1 11.4 1.0
CE2 A:TYQ382 4.1 28.4 1.0
ND1 A:HIS431 4.1 8.6 1.0
CG A:HIS431 4.1 7.4 1.0
CE1 A:TYQ382 4.3 17.5 1.0
O A:HOH940 4.5 10.9 1.0
CA A:HIS592 4.8 9.3 1.0

Copper binding site 2 out of 2 in 3x3y

Go back to Copper Binding Sites List in 3x3y
Copper binding site 2 out of 2 in the Copper Amine Oxidase From Arthrobacter Globiformis Anaerobically Reduced By Histamine


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Copper Amine Oxidase From Arthrobacter Globiformis Anaerobically Reduced By Histamine within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu701

b:12.2
occ:1.00
NE2 B:HIS433 2.0 8.6 1.0
ND1 B:HIS592 2.0 10.3 1.0
NE2 B:HIS431 2.0 9.2 1.0
OH B:TYQ382 2.7 16.5 1.0
CD2 B:HIS433 2.9 11.4 1.0
CG B:HIS592 3.0 10.6 1.0
CE1 B:HIS592 3.0 13.8 1.0
CE1 B:HIS433 3.0 12.0 1.0
CD2 B:HIS431 3.0 9.7 1.0
CE1 B:HIS431 3.0 8.8 1.0
CB B:HIS592 3.3 9.7 1.0
CZ B:TYQ382 3.5 18.4 1.0
O B:HOH1083 3.5 27.8 1.0
N5 B:TYQ382 4.1 30.7 1.0
NE2 B:HIS592 4.1 11.2 1.0
ND1 B:HIS433 4.1 11.2 1.0
CE2 B:TYQ382 4.1 29.5 1.0
ND1 B:HIS431 4.1 9.0 1.0
CG B:HIS433 4.1 9.4 1.0
CD2 B:HIS592 4.1 10.3 1.0
CG B:HIS431 4.1 9.2 1.0
CE1 B:TYQ382 4.3 19.2 1.0
O B:HOH837 4.5 12.9 1.0
CA B:HIS592 4.8 7.8 1.0

Reference:

T.Murakawa, A.Hamaguchi, S.Nakanishi, M.Kataoka, T.Nakai, Y.Kawano, H.Yamaguchi, H.Hayashi, K.Tanizawa, T.Okajima. Probing the Catalytic Mechanism of Copper Amine Oxidase From Arthrobacter Globiformis with Halide Ions J.Biol.Chem. 2015.
ISSN: ESSN 1083-351X
DOI: 10.1074/JBC.M115.662726
Page generated: Sun Dec 13 11:13:01 2020

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