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Copper in PDB 3wa2: High Resolution Crystal Structure of Copper Amine Oxidase From Arthrobacter Globiformis

Enzymatic activity of High Resolution Crystal Structure of Copper Amine Oxidase From Arthrobacter Globiformis

All present enzymatic activity of High Resolution Crystal Structure of Copper Amine Oxidase From Arthrobacter Globiformis:
1.4.3.21;

Protein crystallography data

The structure of High Resolution Crystal Structure of Copper Amine Oxidase From Arthrobacter Globiformis, PDB code: 3wa2 was solved by T.Murakawa, H.Hayashi, T.Sunami, K.Kurihara, T.Tamada, R.Kuroki, M.Suzuki, K.Tanizawa, T.Okajima, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.97 / 1.08
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 157.745, 62.379, 92.076, 90.00, 112.10, 90.00
R / Rfree (%) 13 / 15

Other elements in 3wa2:

The structure of High Resolution Crystal Structure of Copper Amine Oxidase From Arthrobacter Globiformis also contains other interesting chemical elements:

Sodium (Na) 1 atom

Copper Binding Sites:

The binding sites of Copper atom in the High Resolution Crystal Structure of Copper Amine Oxidase From Arthrobacter Globiformis (pdb code 3wa2). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total only one binding site of Copper was determined in the High Resolution Crystal Structure of Copper Amine Oxidase From Arthrobacter Globiformis, PDB code: 3wa2:

Copper binding site 1 out of 1 in 3wa2

Go back to Copper Binding Sites List in 3wa2
Copper binding site 1 out of 1 in the High Resolution Crystal Structure of Copper Amine Oxidase From Arthrobacter Globiformis


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of High Resolution Crystal Structure of Copper Amine Oxidase From Arthrobacter Globiformis within 5.0Å range:
probe atom residue distance (Å) B Occ
X:Cu701

b:9.9
occ:1.00
 NE2 X:HIS433 2.0 8.9 1.0
ND1 X:HIS592 2.0 9.6 0.9
NE2 X:HIS431 2.0 7.8 1.0
O X:HOH1184 2.1 20.4 1.0
ND1 X:HIS592 2.2 5.7 0.1
O X:HOH1167 2.5 15.3 1.0
H242 X:1PE730 2.6 28.2 0.5
CE1 X:HIS592 3.0 9.7 0.9
CD2 X:HIS433 3.0 8.7 1.0
CE1 X:HIS433 3.0 8.7 1.0
CD2 X:HIS431 3.0 8.0 1.0
CE1 X:HIS431 3.0 8.0 1.0
CG X:HIS592 3.1 8.9 0.9
HE1 X:HIS592 3.1 11.6 0.9
HD2 X:HIS433 3.2 10.4 1.0
HD2 X:HIS431 3.2 9.6 1.0
CG X:HIS592 3.2 4.8 0.1
HB2 X:HIS592 3.2 8.0 0.1
CE1 X:HIS592 3.2 6.2 0.1
HE1 X:HIS433 3.2 10.5 1.0
HE1 X:HIS431 3.2 9.6 1.0
HB3 X:HIS592 3.2 12.0 0.9
HB2 X:HIS592 3.2 12.0 0.9
HE1 X:HIS592 3.4 7.4 0.1
CB X:HIS592 3.4 10.0 0.9
HB3 X:HIS592 3.4 8.0 0.1
C24 X:1PE730 3.4 23.5 0.5
CB X:HIS592 3.5 6.6 0.1
H141 X:1PE730 3.6 30.0 0.5
OH4 X:1PE730 3.7 26.9 0.5
HE1 X:MET602 4.0 13.7 0.5
C14 X:1PE730 4.1 25.0 0.5
NE2 X:HIS592 4.1 9.3 0.9
ND1 X:HIS431 4.1 7.8 1.0
ND1 X:HIS433 4.1 8.2 1.0
H241 X:1PE730 4.1 28.2 0.5
CG X:HIS433 4.2 7.8 1.0
CG X:HIS431 4.2 7.4 1.0
CD2 X:HIS592 4.2 9.5 0.9
H132 X:1PE730 4.3 32.7 0.5
NE2 X:HIS592 4.3 4.5 0.1
CD2 X:HIS592 4.3 5.2 0.1
HG12 X:VAL406 4.4 14.6 0.5
O X:HOH857 4.4 13.6 1.0
HE1 X:MET602 4.4 9.7 0.5
O X:HOH810 4.4 10.8 1.0
C13 X:1PE730 4.5 27.2 0.5
H142 X:1PE730 4.6 30.0 0.5
H252 X:1PE730 4.6 26.3 0.5
HG3 X:PRO594 4.7 11.8 1.0
CE X:MET602 4.7 11.4 0.5
H3 X:TPQ382 4.8 13.6 1.0
O2 X:TPQ382 4.8 13.3 1.0
HE2 X:HIS592 4.9 11.2 0.9
HE2 X:MET602 4.9 13.7 0.5
SD X:MET602 4.9 19.4 0.5
HD1 X:HIS431 4.9 9.3 1.0
HD1 X:HIS433 4.9 9.9 1.0
SD X:MET602 4.9 9.2 0.5
CA X:HIS592 4.9 8.8 0.9
CA X:HIS592 5.0 7.7 0.1

Reference:

T.Murakawa, H.Hayashi, T.Sunami, K.Kurihara, T.Tamada, R.Kuroki, M.Suzuki, K.Tanizawa, T.Okajima. High-Resolution Crystal Structure of Copper Amine Oxidase From Arthrobacter Globiformis: Assignment of Bound Diatomic Molecules As O2 Acta Crystallogr.,Sect.D V. 69 2483 2013.
ISSN: ISSN 0907-4449
PubMed: 24311589
DOI: 10.1107/S0907444913023196
Page generated: Sun Dec 13 11:12:38 2020

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