Atomistry » Copper » PDB 3t6w-3x1n » 3u52
Atomistry »
  Copper »
    PDB 3t6w-3x1n »
      3u52 »

Copper in PDB 3u52: X-Ray Crystal Structure of Xenon-Pressurized Phenol Hydroxylase From Pseudomonas Sp. OX1

Protein crystallography data

The structure of X-Ray Crystal Structure of Xenon-Pressurized Phenol Hydroxylase From Pseudomonas Sp. OX1, PDB code: 3u52 was solved by M.S.Mccormick, S.J.Lippard, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.00 / 1.95
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 83.942, 141.761, 181.207, 90.00, 90.00, 90.00
R / Rfree (%) 18.3 / 22.8

Other elements in 3u52:

The structure of X-Ray Crystal Structure of Xenon-Pressurized Phenol Hydroxylase From Pseudomonas Sp. OX1 also contains other interesting chemical elements:

Xenon (Xe) 24 atoms
Zinc (Zn) 2 atoms
Iron (Fe) 4 atoms

Copper Binding Sites:

The binding sites of Copper atom in the X-Ray Crystal Structure of Xenon-Pressurized Phenol Hydroxylase From Pseudomonas Sp. OX1 (pdb code 3u52). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the X-Ray Crystal Structure of Xenon-Pressurized Phenol Hydroxylase From Pseudomonas Sp. OX1, PDB code: 3u52:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in 3u52

Go back to Copper Binding Sites List in 3u52
Copper binding site 1 out of 2 in the X-Ray Crystal Structure of Xenon-Pressurized Phenol Hydroxylase From Pseudomonas Sp. OX1


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of X-Ray Crystal Structure of Xenon-Pressurized Phenol Hydroxylase From Pseudomonas Sp. OX1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu515

b:32.7
occ:1.00
NE2 A:HIS494 2.0 38.9 1.0
ND1 A:HIS155 2.1 20.4 1.0
CE1 A:HIS494 2.9 39.6 1.0
CG A:HIS155 2.9 22.4 1.0
CD2 A:HIS494 3.0 34.1 1.0
CB A:HIS155 3.1 21.0 1.0
CE1 A:HIS155 3.2 23.7 1.0
CA A:HIS155 3.5 21.4 1.0
O A:HIS155 3.8 21.1 1.0
CD1 C:ILE13 3.9 32.2 1.0
O A:HOH538 3.9 33.9 1.0
ND1 A:HIS494 4.0 38.9 1.0
CG A:HIS494 4.1 34.2 1.0
CD2 A:HIS155 4.1 23.0 1.0
C A:HIS155 4.2 21.0 1.0
NE2 A:HIS155 4.2 23.9 1.0
NE2 A:HIS85 4.3 27.9 1.0
CD1 A:ILE498 4.4 42.1 1.0
CA C:PRO12 4.4 33.9 1.0
N C:PRO12 4.4 35.3 1.0
O A:LYS154 4.7 22.6 1.0
N A:HIS155 4.8 21.0 1.0
CD2 A:HIS85 4.8 26.0 1.0
N C:ILE13 5.0 31.6 1.0
CG1 A:ILE498 5.0 40.9 1.0

Copper binding site 2 out of 2 in 3u52

Go back to Copper Binding Sites List in 3u52
Copper binding site 2 out of 2 in the X-Ray Crystal Structure of Xenon-Pressurized Phenol Hydroxylase From Pseudomonas Sp. OX1


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of X-Ray Crystal Structure of Xenon-Pressurized Phenol Hydroxylase From Pseudomonas Sp. OX1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu515

b:33.8
occ:1.00
NE2 B:HIS494 2.0 37.2 1.0
ND1 B:HIS155 2.1 23.3 1.0
CG B:HIS155 2.9 21.1 1.0
CE1 B:HIS494 3.0 38.1 1.0
CD2 B:HIS494 3.0 35.5 1.0
CB B:HIS155 3.0 21.8 1.0
CE1 B:HIS155 3.2 22.6 1.0
CA B:HIS155 3.5 22.7 1.0
O B:HOH570 3.7 38.0 1.0
O B:HIS155 3.9 24.6 1.0
O D:GLU11 3.9 53.2 1.0
CD1 D:ILE13 4.1 39.7 1.0
ND1 B:HIS494 4.1 38.0 1.0
CD2 B:HIS155 4.1 21.1 1.0
CG B:HIS494 4.2 36.2 1.0
C B:HIS155 4.2 23.5 1.0
NE2 B:HIS155 4.2 23.1 1.0
NE2 B:HIS85 4.3 27.2 1.0
CD1 B:ILE498 4.4 43.5 1.0
CG1 D:VAL10 4.5 64.6 1.0
O B:LYS154 4.7 24.2 1.0
N B:HIS155 4.7 22.1 1.0
CA D:PRO12 4.7 47.9 1.0
N D:ILE13 4.8 41.2 1.0
CD2 B:HIS85 4.8 26.5 1.0
C D:GLU11 4.8 54.1 1.0

Reference:

M.S.Mccormick, S.J.Lippard. Analysis of Substrate Access to Active Sites in Bacterial Multicomponent Monooxygenase Hydroxylases: X-Ray Crystal Structure of Xenon-Pressurized Phenol Hydroxylase From Pseudomonas Sp. OX1. Biochemistry V. 50 11058 2011.
ISSN: ISSN 0006-2960
PubMed: 22136180
DOI: 10.1021/BI201248B
Page generated: Sun Dec 13 11:12:30 2020

Last articles

Zn in 7L0B
Zn in 7KZZ
Zn in 7KZL
Zn in 7L3O
Zn in 7L52
Zn in 7L6T
Zn in 7KZ7
Zn in 7L6R
Zn in 7KKM
Zn in 7KKQ
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy