Copper in PDB 3tyh: Crystal Structure of Oxo-Cupper Clusters Binding to Ferric Binding Protein From Neisseria Gonorrhoeae

The structure of Crystal Structure of Oxo-Cupper Clusters Binding to Ferric Binding Protein From Neisseria Gonorrhoeae, PDB code: 3tyh was solved by W.J.Chen, H.F.Wang, C.J.Zhou, D.R.Ye, J.Huang, X.S.Tan, W.Q.Zhong, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.96 / 2.10
Space group	P 32
Cell size a, b, c (Å), α, β, γ (°)	146.514, 146.514, 114.590, 90.00, 90.00, 120.00
R / Rfree (%)	14.3 / 16.9

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 18;

Binding sites:

The binding sites of Copper atom in the Crystal Structure of Oxo-Cupper Clusters Binding to Ferric Binding Protein From Neisseria Gonorrhoeae (pdb code 3tyh). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 18 binding sites of Copper where determined in the Crystal Structure of Oxo-Cupper Clusters Binding to Ferric Binding Protein From Neisseria Gonorrhoeae, PDB code: 3tyh:
Jump to Copper binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Copper binding site 1 out of 18 in the Crystal Structure of Oxo-Cupper Clusters Binding to Ferric Binding Protein From Neisseria Gonorrhoeae


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of Oxo-Cupper Clusters Binding to Ferric Binding Protein From Neisseria Gonorrhoeae within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu310 b:38.2 occ:1.00 OH A:TYR195 1.9 19.3 1.0 O A:HOH1371 2.1 15.4 1.0 O A:HOH1176 2.4 19.6 1.0 O A:HOH654 2.6 21.2 1.0 O A:HOH1050 2.8 25.4 1.0 O A:HOH651 2.8 13.4 1.0 CZ A:TYR195 2.9 15.1 1.0 CU A:CU311 3.2 37.9 1.0 CE2 A:TYR195 3.5 15.7 1.0 OH A:TYR196 3.9 14.2 1.0 CE1 A:TYR195 3.9 14.7 1.0 ND2 A:ASN193 4.1 17.2 1.0 OE2 A:GLU57 4.1 21.6 1.0 O A:HOH1400 4.2 26.5 1.0 NH2 A:ARG262 4.4 16.4 1.0 CZ A:TYR196 4.4 17.1 1.0 O A:HOH370 4.8 27.1 1.0 CD2 A:TYR195 4.8 14.0 1.0 O A:HOH1364 4.9 15.8 1.0

Copper binding site 2 out of 18 in the Crystal Structure of Oxo-Cupper Clusters Binding to Ferric Binding Protein From Neisseria Gonorrhoeae


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Crystal Structure of Oxo-Cupper Clusters Binding to Ferric Binding Protein From Neisseria Gonorrhoeae within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu311 b:37.9 occ:1.00 OH A:TYR196 1.8 14.2 1.0 O A:HOH654 2.4 21.2 1.0 O A:HOH1176 2.4 19.6 1.0 O A:HOH1400 2.6 26.5 1.0 CZ A:TYR196 2.9 17.1 1.0 CU A:CU310 3.2 38.2 1.0 CE2 A:TYR196 3.5 20.4 1.0 OH A:TYR195 3.7 19.3 1.0 O A:HOH1364 3.8 15.8 1.0 O A:HOH651 4.0 13.4 1.0 ND2 A:ASN175 4.0 19.3 1.0 O A:HOH346 4.0 20.2 1.0 CE1 A:TYR196 4.1 14.9 1.0 O A:HOH479 4.5 17.9 1.0 O A:HOH1050 4.6 25.4 1.0 ND2 A:ASN193 4.7 17.2 1.0 CZ A:TYR195 4.7 15.1 1.0 CE2 A:TYR195 4.8 15.7 1.0 CB A:ASN175 4.9 17.1 1.0 CD2 A:TYR196 4.9 22.6 1.0 CG A:ASN175 5.0 15.7 1.0

Copper binding site 3 out of 18 in the Crystal Structure of Oxo-Cupper Clusters Binding to Ferric Binding Protein From Neisseria Gonorrhoeae


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Crystal Structure of Oxo-Cupper Clusters Binding to Ferric Binding Protein From Neisseria Gonorrhoeae within 5.0Å range: probe atom residue distance (Å) B Occ B:Cu310 b:41.0 occ:1.00 OH B:TYR195 2.1 22.4 1.0 O B:HOH959 2.3 28.4 1.0 CU B:CU311 3.0 46.8 1.0 CZ B:TYR195 3.1 14.9 1.0 O B:HOH1168 3.1 25.4 1.0 O B:HOH340 3.4 24.3 1.0 CE2 B:TYR195 3.8 12.7 1.0 OH B:TYR196 4.0 28.4 1.0 CE1 B:TYR195 4.0 21.0 1.0 OE1 B:GLU57 4.1 36.9 1.0 NH2 B:ARG262 4.2 17.9 1.0 O B:HOH701 4.3 22.1 1.0 OD1 B:ASN193 4.4 19.7 1.0 O B:HOH315 4.6 31.3 1.0 CZ B:TYR196 4.7 21.2 1.0 O B:HOH546 4.7 24.6 1.0 CE1 B:TYR196 5.0 20.1 1.0 CD B:ARG101 5.0 23.8 1.0

Copper binding site 4 out of 18 in the Crystal Structure of Oxo-Cupper Clusters Binding to Ferric Binding Protein From Neisseria Gonorrhoeae


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Crystal Structure of Oxo-Cupper Clusters Binding to Ferric Binding Protein From Neisseria Gonorrhoeae within 5.0Å range: probe atom residue distance (Å) B Occ B:Cu311 b:46.8 occ:1.00 OH B:TYR196 1.9 28.4 1.0 O B:HOH959 2.3 28.4 1.0 O B:HOH1287 2.3 20.6 1.0 O B:HOH315 2.6 31.3 1.0 CU B:CU310 3.0 41.0 1.0 CZ B:TYR196 3.2 21.2 1.0 O B:HOH340 3.2 24.3 1.0 OH B:TYR195 3.6 22.4 1.0 O B:HOH1168 3.6 25.4 1.0 CE2 B:TYR196 3.9 16.7 1.0 O B:HOH701 3.9 22.1 1.0 CE1 B:TYR196 4.1 20.1 1.0 OD1 B:ASN175 4.6 25.2 1.0 CZ B:TYR195 4.6 14.9 1.0 CE2 B:TYR195 4.7 12.7 1.0

Copper binding site 5 out of 18 in the Crystal Structure of Oxo-Cupper Clusters Binding to Ferric Binding Protein From Neisseria Gonorrhoeae


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 5 of Crystal Structure of Oxo-Cupper Clusters Binding to Ferric Binding Protein From Neisseria Gonorrhoeae within 5.0Å range: probe atom residue distance (Å) B Occ C:Cu310 b:49.6 occ:1.00 OH C:TYR196 1.9 21.2 1.0 O C:HOH693 1.9 14.2 1.0 CU C:CU311 2.9 37.1 1.0 O C:HOH1567 3.0 23.2 1.0 O C:HOH537 3.0 30.5 1.0 CZ C:TYR196 3.2 16.8 1.0 OH C:TYR195 3.2 21.8 1.0 OD1 C:ASN175 3.7 22.6 1.0 O C:HOH1326 3.8 21.4 1.0 CE2 C:TYR196 3.8 13.6 1.0 CE1 C:TYR196 4.2 17.5 1.0 O C:HOH580 4.4 27.6 1.0 CZ C:TYR195 4.4 19.7 1.0 ND2 C:ASN193 4.5 11.2 1.0 CE2 C:TYR195 4.7 18.0 1.0 CG C:ASN175 4.7 17.8 1.0

Copper binding site 6 out of 18 in the Crystal Structure of Oxo-Cupper Clusters Binding to Ferric Binding Protein From Neisseria Gonorrhoeae


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 6 of Crystal Structure of Oxo-Cupper Clusters Binding to Ferric Binding Protein From Neisseria Gonorrhoeae within 5.0Å range: probe atom residue distance (Å) B Occ C:Cu311 b:37.1 occ:1.00 OH C:TYR195 1.8 21.8 1.0 O C:HOH580 2.3 27.6 1.0 CZ C:TYR195 2.8 19.7 1.0 O C:HOH1326 2.9 21.4 1.0 CU C:CU310 2.9 49.6 1.0 CE2 C:TYR195 3.5 18.0 1.0 O C:HOH537 3.5 30.5 1.0 OH C:TYR196 3.7 21.2 1.0 CE1 C:TYR195 3.8 18.3 1.0 ND2 C:ASN193 4.1 11.2 1.0 O C:HOH345 4.1 21.3 1.0 NH1 C:ARG101 4.2 46.3 1.0 CZ C:TYR196 4.4 16.8 1.0 O C:HOH1567 4.5 23.2 1.0 NH2 C:ARG262 4.5 18.7 1.0 O C:HOH693 4.6 14.2 1.0 O C:HOH1123 4.6 29.8 1.0 CD2 C:TYR195 4.7 18.8 1.0 CD C:ARG101 4.9 17.8 1.0 CD1 C:TYR195 5.0 20.1 1.0 CE1 C:TYR196 5.0 17.5 1.0

Copper binding site 7 out of 18 in the Crystal Structure of Oxo-Cupper Clusters Binding to Ferric Binding Protein From Neisseria Gonorrhoeae


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 7 of Crystal Structure of Oxo-Cupper Clusters Binding to Ferric Binding Protein From Neisseria Gonorrhoeae within 5.0Å range: probe atom residue distance (Å) B Occ D:Cu310 b:45.5 occ:1.00 O D:HOH1193 2.3 22.8 1.0 OH D:TYR195 2.3 27.7 1.0 O D:HOH548 2.4 23.9 1.0 O D:HOH385 2.7 30.2 1.0 CU D:CU311 3.1 50.3 1.0 O D:HOH686 3.3 26.5 1.0 CZ D:TYR195 3.5 21.8 1.0 OH D:TYR196 3.6 25.3 1.0 O D:HOH963 3.9 22.9 1.0 CE2 D:TYR195 4.2 19.0 1.0 CE1 D:TYR195 4.5 20.0 1.0 CZ D:TYR196 4.5 22.9 1.0 O D:HOH1600 4.6 29.0 1.0 OD1 D:ASN193 4.7 22.3 1.0 CE1 D:TYR196 5.0 21.9 1.0

Copper binding site 8 out of 18 in the Crystal Structure of Oxo-Cupper Clusters Binding to Ferric Binding Protein From Neisseria Gonorrhoeae


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 8 of Crystal Structure of Oxo-Cupper Clusters Binding to Ferric Binding Protein From Neisseria Gonorrhoeae within 5.0Å range: probe atom residue distance (Å) B Occ D:Cu311 b:50.3 occ:1.00 OH D:TYR196 1.8 25.3 1.0 O D:HOH548 2.6 23.9 1.0 O D:HOH963 2.7 22.9 1.0 CU D:CU310 3.1 45.5 1.0 CZ D:TYR196 3.2 22.9 1.0 O D:HOH340 3.6 32.6 1.0 O D:HOH385 3.6 30.2 1.0 OH D:TYR195 3.8 27.7 1.0 O D:HOH334 3.8 27.5 1.0 CE1 D:TYR196 4.0 21.9 1.0 OD1 D:ASN175 4.0 16.3 1.0 CE2 D:TYR196 4.2 15.9 1.0 OD1 D:ASN193 4.6 22.3 1.0 O D:HOH1193 4.7 22.8 1.0 O D:HOH919 4.7 18.1 1.0 CG D:ASN175 4.9 17.0 1.0 CZ D:TYR195 5.0 21.8 1.0

Copper binding site 9 out of 18 in the Crystal Structure of Oxo-Cupper Clusters Binding to Ferric Binding Protein From Neisseria Gonorrhoeae


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 9 of Crystal Structure of Oxo-Cupper Clusters Binding to Ferric Binding Protein From Neisseria Gonorrhoeae within 5.0Å range: probe atom residue distance (Å) B Occ E:Cu310 b:46.8 occ:1.00 OH E:TYR195 1.8 25.9 1.0 O E:HOH1588 2.2 28.4 1.0 O E:HOH949 2.6 24.4 1.0 CZ E:TYR195 2.8 20.2 1.0 CU E:CU311 3.1 45.3 1.0 CE2 E:TYR195 3.4 18.1 1.0 OH E:TYR196 3.5 28.2 1.0 CE1 E:TYR195 3.9 17.3 1.0 O E:HOH1376 4.2 31.3 1.0 CZ E:TYR196 4.2 21.7 1.0 O E:HOH332 4.3 28.7 1.0 CE1 E:TYR196 4.6 21.8 1.0 CD2 E:TYR195 4.7 17.6 1.0 NH2 E:ARG262 4.8 21.8 1.0 CE2 E:TYR196 4.9 17.7 1.0 NH1 E:ARG101 4.9 19.1 1.0 ND2 E:ASN193 4.9 20.4 1.0

Copper binding site 10 out of 18 in the Crystal Structure of Oxo-Cupper Clusters Binding to Ferric Binding Protein From Neisseria Gonorrhoeae


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 10 of Crystal Structure of Oxo-Cupper Clusters Binding to Ferric Binding Protein From Neisseria Gonorrhoeae within 5.0Å range: probe atom residue distance (Å) B Occ E:Cu311 b:45.3 occ:1.00 OH E:TYR196 1.8 28.2 1.0 O E:HOH1376 2.6 31.3 1.0 O E:HOH332 2.9 28.7 1.0 CU E:CU310 3.1 46.8 1.0 CZ E:TYR196 3.2 21.7 1.0 O E:HOH998 3.4 31.1 1.0 OH E:TYR195 3.7 25.9 1.0 O E:HOH949 3.8 24.4 1.0 CE2 E:TYR196 3.9 17.7 1.0 O E:HOH322 4.1 16.1 1.0 CE1 E:TYR196 4.2 21.8 1.0 OD1 E:ASN175 4.3 22.9 1.0 O E:HOH600 4.8 19.2 1.0 O E:HOH1588 4.8 28.4 1.0 CZ E:TYR195 4.9 20.2 1.0

W.J.Chen, H.F.Wang, C.J.Zhou, D.R.Ye, J.Huang, X.S.Tan, W.Q.Zhong. Crystal Structure of Oxo-Cupper Clusters Binding to Ferric Binding Protein From Neisseria Gonorrhoeae To Be Published.