Atomistry » Copper » PDB 3t6w-3x1n » 3tyh
Atomistry »
  Copper »
    PDB 3t6w-3x1n »
      3tyh »

Copper in PDB 3tyh: Crystal Structure of Oxo-Cupper Clusters Binding to Ferric Binding Protein From Neisseria Gonorrhoeae

Protein crystallography data

The structure of Crystal Structure of Oxo-Cupper Clusters Binding to Ferric Binding Protein From Neisseria Gonorrhoeae, PDB code: 3tyh was solved by W.J.Chen, H.F.Wang, C.J.Zhou, D.R.Ye, J.Huang, X.S.Tan, W.Q.Zhong, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.96 / 2.10
Space group P 32
Cell size a, b, c (Å), α, β, γ (°) 146.514, 146.514, 114.590, 90.00, 90.00, 120.00
R / Rfree (%) 14.3 / 16.9

Copper Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 18;

Binding sites:

The binding sites of Copper atom in the Crystal Structure of Oxo-Cupper Clusters Binding to Ferric Binding Protein From Neisseria Gonorrhoeae (pdb code 3tyh). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 18 binding sites of Copper where determined in the Crystal Structure of Oxo-Cupper Clusters Binding to Ferric Binding Protein From Neisseria Gonorrhoeae, PDB code: 3tyh:
Jump to Copper binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Copper binding site 1 out of 18 in 3tyh

Go back to Copper Binding Sites List in 3tyh
Copper binding site 1 out of 18 in the Crystal Structure of Oxo-Cupper Clusters Binding to Ferric Binding Protein From Neisseria Gonorrhoeae


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of Oxo-Cupper Clusters Binding to Ferric Binding Protein From Neisseria Gonorrhoeae within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu310

b:38.2
occ:1.00
OH A:TYR195 1.9 19.3 1.0
O A:HOH1371 2.1 15.4 1.0
O A:HOH1176 2.4 19.6 1.0
O A:HOH654 2.6 21.2 1.0
O A:HOH1050 2.8 25.4 1.0
O A:HOH651 2.8 13.4 1.0
CZ A:TYR195 2.9 15.1 1.0
CU A:CU311 3.2 37.9 1.0
CE2 A:TYR195 3.5 15.7 1.0
OH A:TYR196 3.9 14.2 1.0
CE1 A:TYR195 3.9 14.7 1.0
ND2 A:ASN193 4.1 17.2 1.0
OE2 A:GLU57 4.1 21.6 1.0
O A:HOH1400 4.2 26.5 1.0
NH2 A:ARG262 4.4 16.4 1.0
CZ A:TYR196 4.4 17.1 1.0
O A:HOH370 4.8 27.1 1.0
CD2 A:TYR195 4.8 14.0 1.0
O A:HOH1364 4.9 15.8 1.0

Copper binding site 2 out of 18 in 3tyh

Go back to Copper Binding Sites List in 3tyh
Copper binding site 2 out of 18 in the Crystal Structure of Oxo-Cupper Clusters Binding to Ferric Binding Protein From Neisseria Gonorrhoeae


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Crystal Structure of Oxo-Cupper Clusters Binding to Ferric Binding Protein From Neisseria Gonorrhoeae within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu311

b:37.9
occ:1.00
OH A:TYR196 1.8 14.2 1.0
O A:HOH654 2.4 21.2 1.0
O A:HOH1176 2.4 19.6 1.0
O A:HOH1400 2.6 26.5 1.0
CZ A:TYR196 2.9 17.1 1.0
CU A:CU310 3.2 38.2 1.0
CE2 A:TYR196 3.5 20.4 1.0
OH A:TYR195 3.7 19.3 1.0
O A:HOH1364 3.8 15.8 1.0
O A:HOH651 4.0 13.4 1.0
ND2 A:ASN175 4.0 19.3 1.0
O A:HOH346 4.0 20.2 1.0
CE1 A:TYR196 4.1 14.9 1.0
O A:HOH479 4.5 17.9 1.0
O A:HOH1050 4.6 25.4 1.0
ND2 A:ASN193 4.7 17.2 1.0
CZ A:TYR195 4.7 15.1 1.0
CE2 A:TYR195 4.8 15.7 1.0
CB A:ASN175 4.9 17.1 1.0
CD2 A:TYR196 4.9 22.6 1.0
CG A:ASN175 5.0 15.7 1.0

Copper binding site 3 out of 18 in 3tyh

Go back to Copper Binding Sites List in 3tyh
Copper binding site 3 out of 18 in the Crystal Structure of Oxo-Cupper Clusters Binding to Ferric Binding Protein From Neisseria Gonorrhoeae


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Crystal Structure of Oxo-Cupper Clusters Binding to Ferric Binding Protein From Neisseria Gonorrhoeae within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu310

b:41.0
occ:1.00
OH B:TYR195 2.1 22.4 1.0
O B:HOH959 2.3 28.4 1.0
CU B:CU311 3.0 46.8 1.0
CZ B:TYR195 3.1 14.9 1.0
O B:HOH1168 3.1 25.4 1.0
O B:HOH340 3.4 24.3 1.0
CE2 B:TYR195 3.8 12.7 1.0
OH B:TYR196 4.0 28.4 1.0
CE1 B:TYR195 4.0 21.0 1.0
OE1 B:GLU57 4.1 36.9 1.0
NH2 B:ARG262 4.2 17.9 1.0
O B:HOH701 4.3 22.1 1.0
OD1 B:ASN193 4.4 19.7 1.0
O B:HOH315 4.6 31.3 1.0
CZ B:TYR196 4.7 21.2 1.0
O B:HOH546 4.7 24.6 1.0
CE1 B:TYR196 5.0 20.1 1.0
CD B:ARG101 5.0 23.8 1.0

Copper binding site 4 out of 18 in 3tyh

Go back to Copper Binding Sites List in 3tyh
Copper binding site 4 out of 18 in the Crystal Structure of Oxo-Cupper Clusters Binding to Ferric Binding Protein From Neisseria Gonorrhoeae


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Crystal Structure of Oxo-Cupper Clusters Binding to Ferric Binding Protein From Neisseria Gonorrhoeae within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu311

b:46.8
occ:1.00
OH B:TYR196 1.9 28.4 1.0
O B:HOH959 2.3 28.4 1.0
O B:HOH1287 2.3 20.6 1.0
O B:HOH315 2.6 31.3 1.0
CU B:CU310 3.0 41.0 1.0
CZ B:TYR196 3.2 21.2 1.0
O B:HOH340 3.2 24.3 1.0
OH B:TYR195 3.6 22.4 1.0
O B:HOH1168 3.6 25.4 1.0
CE2 B:TYR196 3.9 16.7 1.0
O B:HOH701 3.9 22.1 1.0
CE1 B:TYR196 4.1 20.1 1.0
OD1 B:ASN175 4.6 25.2 1.0
CZ B:TYR195 4.6 14.9 1.0
CE2 B:TYR195 4.7 12.7 1.0

Copper binding site 5 out of 18 in 3tyh

Go back to Copper Binding Sites List in 3tyh
Copper binding site 5 out of 18 in the Crystal Structure of Oxo-Cupper Clusters Binding to Ferric Binding Protein From Neisseria Gonorrhoeae


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 5 of Crystal Structure of Oxo-Cupper Clusters Binding to Ferric Binding Protein From Neisseria Gonorrhoeae within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cu310

b:49.6
occ:1.00
OH C:TYR196 1.9 21.2 1.0
O C:HOH693 1.9 14.2 1.0
CU C:CU311 2.9 37.1 1.0
O C:HOH1567 3.0 23.2 1.0
O C:HOH537 3.0 30.5 1.0
CZ C:TYR196 3.2 16.8 1.0
OH C:TYR195 3.2 21.8 1.0
OD1 C:ASN175 3.7 22.6 1.0
O C:HOH1326 3.8 21.4 1.0
CE2 C:TYR196 3.8 13.6 1.0
CE1 C:TYR196 4.2 17.5 1.0
O C:HOH580 4.4 27.6 1.0
CZ C:TYR195 4.4 19.7 1.0
ND2 C:ASN193 4.5 11.2 1.0
CE2 C:TYR195 4.7 18.0 1.0
CG C:ASN175 4.7 17.8 1.0

Copper binding site 6 out of 18 in 3tyh

Go back to Copper Binding Sites List in 3tyh
Copper binding site 6 out of 18 in the Crystal Structure of Oxo-Cupper Clusters Binding to Ferric Binding Protein From Neisseria Gonorrhoeae


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 6 of Crystal Structure of Oxo-Cupper Clusters Binding to Ferric Binding Protein From Neisseria Gonorrhoeae within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cu311

b:37.1
occ:1.00
OH C:TYR195 1.8 21.8 1.0
O C:HOH580 2.3 27.6 1.0
CZ C:TYR195 2.8 19.7 1.0
O C:HOH1326 2.9 21.4 1.0
CU C:CU310 2.9 49.6 1.0
CE2 C:TYR195 3.5 18.0 1.0
O C:HOH537 3.5 30.5 1.0
OH C:TYR196 3.7 21.2 1.0
CE1 C:TYR195 3.8 18.3 1.0
ND2 C:ASN193 4.1 11.2 1.0
O C:HOH345 4.1 21.3 1.0
NH1 C:ARG101 4.2 46.3 1.0
CZ C:TYR196 4.4 16.8 1.0
O C:HOH1567 4.5 23.2 1.0
NH2 C:ARG262 4.5 18.7 1.0
O C:HOH693 4.6 14.2 1.0
O C:HOH1123 4.6 29.8 1.0
CD2 C:TYR195 4.7 18.8 1.0
CD C:ARG101 4.9 17.8 1.0
CD1 C:TYR195 5.0 20.1 1.0
CE1 C:TYR196 5.0 17.5 1.0

Copper binding site 7 out of 18 in 3tyh

Go back to Copper Binding Sites List in 3tyh
Copper binding site 7 out of 18 in the Crystal Structure of Oxo-Cupper Clusters Binding to Ferric Binding Protein From Neisseria Gonorrhoeae


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 7 of Crystal Structure of Oxo-Cupper Clusters Binding to Ferric Binding Protein From Neisseria Gonorrhoeae within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cu310

b:45.5
occ:1.00
O D:HOH1193 2.3 22.8 1.0
OH D:TYR195 2.3 27.7 1.0
O D:HOH548 2.4 23.9 1.0
O D:HOH385 2.7 30.2 1.0
CU D:CU311 3.1 50.3 1.0
O D:HOH686 3.3 26.5 1.0
CZ D:TYR195 3.5 21.8 1.0
OH D:TYR196 3.6 25.3 1.0
O D:HOH963 3.9 22.9 1.0
CE2 D:TYR195 4.2 19.0 1.0
CE1 D:TYR195 4.5 20.0 1.0
CZ D:TYR196 4.5 22.9 1.0
O D:HOH1600 4.6 29.0 1.0
OD1 D:ASN193 4.7 22.3 1.0
CE1 D:TYR196 5.0 21.9 1.0

Copper binding site 8 out of 18 in 3tyh

Go back to Copper Binding Sites List in 3tyh
Copper binding site 8 out of 18 in the Crystal Structure of Oxo-Cupper Clusters Binding to Ferric Binding Protein From Neisseria Gonorrhoeae


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 8 of Crystal Structure of Oxo-Cupper Clusters Binding to Ferric Binding Protein From Neisseria Gonorrhoeae within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cu311

b:50.3
occ:1.00
OH D:TYR196 1.8 25.3 1.0
O D:HOH548 2.6 23.9 1.0
O D:HOH963 2.7 22.9 1.0
CU D:CU310 3.1 45.5 1.0
CZ D:TYR196 3.2 22.9 1.0
O D:HOH340 3.6 32.6 1.0
O D:HOH385 3.6 30.2 1.0
OH D:TYR195 3.8 27.7 1.0
O D:HOH334 3.8 27.5 1.0
CE1 D:TYR196 4.0 21.9 1.0
OD1 D:ASN175 4.0 16.3 1.0
CE2 D:TYR196 4.2 15.9 1.0
OD1 D:ASN193 4.6 22.3 1.0
O D:HOH1193 4.7 22.8 1.0
O D:HOH919 4.7 18.1 1.0
CG D:ASN175 4.9 17.0 1.0
CZ D:TYR195 5.0 21.8 1.0

Copper binding site 9 out of 18 in 3tyh

Go back to Copper Binding Sites List in 3tyh
Copper binding site 9 out of 18 in the Crystal Structure of Oxo-Cupper Clusters Binding to Ferric Binding Protein From Neisseria Gonorrhoeae


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 9 of Crystal Structure of Oxo-Cupper Clusters Binding to Ferric Binding Protein From Neisseria Gonorrhoeae within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cu310

b:46.8
occ:1.00
OH E:TYR195 1.8 25.9 1.0
O E:HOH1588 2.2 28.4 1.0
O E:HOH949 2.6 24.4 1.0
CZ E:TYR195 2.8 20.2 1.0
CU E:CU311 3.1 45.3 1.0
CE2 E:TYR195 3.4 18.1 1.0
OH E:TYR196 3.5 28.2 1.0
CE1 E:TYR195 3.9 17.3 1.0
O E:HOH1376 4.2 31.3 1.0
CZ E:TYR196 4.2 21.7 1.0
O E:HOH332 4.3 28.7 1.0
CE1 E:TYR196 4.6 21.8 1.0
CD2 E:TYR195 4.7 17.6 1.0
NH2 E:ARG262 4.8 21.8 1.0
CE2 E:TYR196 4.9 17.7 1.0
NH1 E:ARG101 4.9 19.1 1.0
ND2 E:ASN193 4.9 20.4 1.0

Copper binding site 10 out of 18 in 3tyh

Go back to Copper Binding Sites List in 3tyh
Copper binding site 10 out of 18 in the Crystal Structure of Oxo-Cupper Clusters Binding to Ferric Binding Protein From Neisseria Gonorrhoeae


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 10 of Crystal Structure of Oxo-Cupper Clusters Binding to Ferric Binding Protein From Neisseria Gonorrhoeae within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cu311

b:45.3
occ:1.00
OH E:TYR196 1.8 28.2 1.0
O E:HOH1376 2.6 31.3 1.0
O E:HOH332 2.9 28.7 1.0
CU E:CU310 3.1 46.8 1.0
CZ E:TYR196 3.2 21.7 1.0
O E:HOH998 3.4 31.1 1.0
OH E:TYR195 3.7 25.9 1.0
O E:HOH949 3.8 24.4 1.0
CE2 E:TYR196 3.9 17.7 1.0
O E:HOH322 4.1 16.1 1.0
CE1 E:TYR196 4.2 21.8 1.0
OD1 E:ASN175 4.3 22.9 1.0
O E:HOH600 4.8 19.2 1.0
O E:HOH1588 4.8 28.4 1.0
CZ E:TYR195 4.9 20.2 1.0

Reference:

W.J.Chen, H.F.Wang, C.J.Zhou, D.R.Ye, J.Huang, X.S.Tan, W.Q.Zhong. Crystal Structure of Oxo-Cupper Clusters Binding to Ferric Binding Protein From Neisseria Gonorrhoeae To Be Published.
Page generated: Sun Dec 13 11:12:29 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy