Copper in the structure of Crystal Structure of Steccherinum Ochraceum Laccase Obtained By Multi- Crystals Composite Data Collection Technique (20% Dose) (pdb 3t6x)
The binding sites of Copper atom in the structure of Crystal Structure of Steccherinum Ochraceum Laccase Obtained By Multi- Crystals Composite Data Collection Technique (20% Dose) (pdb code 3t6x). This binding sites where shown with 5.0 Angstroms radius around Copper atom. The 3t6x structure was solved by M.FERRARONI, F.BRIGANTI, I.MATERA, M.KOLOMYTSEVA, L.GOLOVLEVA, A.SCOZZAFAVA, A.M.CHERNYKH, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A) | 19.9-2.1 | Space group | P212121 | a (A) | 73.510 | b (A) | 140.040 | c (A) | 172.980 | alpha (°) | 90.00 | beta (°) | 90.00 | gamma (°) | 90.00 | Rfactor (%) | 17.6 | Rfree (%) | 23.6 |
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Copper Binding Sites:Copper binding site 1 out of 12 in 3t6x
|  Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Copper in the PDB 3t6x. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Copper atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Phe341, A: Gly395, A: His397, A: Pro398, A: Cys453, A: Ile455, A: His458, A: Phe463, | conact list:
Atom | Atom | Distance (A) | Cu | CZ A:Phe341 | 4.92 | Cu | CE1 A:Phe341 | 4.85 | Cu | N A:Gly395 | 4.86 | Cu | NE2 A:His397 | 4.04 | Cu | CB A:His397 | 3.51 | Cu | ND1 A:His397 | 2.01 | Cu | CD2 A:His397 | 4.15 | Cu | CE1 A:His397 | 2.89 | Cu | CG A:His397 | 3.08 | Cu | CA A:His397 | 4.09 | Cu | CD A:Pro398 | 4.53 | Cu | CB A:Cys453 | 3.25 | Cu | SG A:Cys453 | 2.05 | Cu | CA A:Cys453 | 4.64 | Cu | O A:Ile455 | 5.00 | Cu | N A:Ile455 | 4.64 | Cu | CB A:Ile455 | 3.80 | Cu | CD1 A:Ile455 | 3.58 | Cu | CG2 A:Ile455 | 4.68 | Cu | CG1 A:Ile455 | 4.12 | Cu | CA A:Ile455 | 4.77 | Cu | NE2 A:His458 | 4.32 | Cu | CB A:His458 | 3.43 | Cu | ND1 A:His458 | 2.23 | Cu | CD2 A:His458 | 4.33 | Cu | CE1 A:His458 | 3.21 | Cu | CG A:His458 | 3.18 | Cu | CA A:His458 | 4.96 | Cu | CE2 A:Phe463 | 4.07 | Cu | CD2 A:Phe463 | 3.78 |
| interactive model:
| Copper binding site 2 out of 12 in 3t6x
|  Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Copper in the PDB 3t6x. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Copper atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: His65, A: His67, A: Trp108, A: His110, A: Ala244, A: His400, A: His452, A: His454, A: Cu503, A: Cu504, A: Per512, A: Hoh675, | conact list:
Atom | Atom | Distance (A) | Cu | NE2 A:His65 | 4.38 | Cu | CD2 A:His65 | 3.91 | Cu | NE2 A:His67 | 4.18 | Cu | CB A:His67 | 3.63 | Cu | ND1 A:His67 | 2.13 | Cu | CD2 A:His67 | 4.30 | Cu | CE1 A:His67 | 3.00 | Cu | CG A:His67 | 3.22 | Cu | CA A:His67 | 4.63 | Cu | CZ2 A:Trp108 | 4.14 | Cu | CE2 A:Trp108 | 4.54 | Cu | NE1 A:Trp108 | 4.65 | Cu | CH2 A:Trp108 | 4.83 | Cu | NE2 A:His110 | 2.28 | Cu | ND1 A:His110 | 4.16 | Cu | CD2 A:His110 | 3.45 | Cu | CE1 A:His110 | 2.94 | Cu | CG A:His110 | 4.43 | Cu | CB A:Ala244 | 4.51 | Cu | NE2 A:His400 | 4.13 | Cu | CD2 A:His400 | 3.96 | Cu | CE1 A:His400 | 4.94 | Cu | CG A:His400 | 4.75 | Cu | CE1 A:His452 | 4.95 | Cu | NE2 A:His454 | 2.02 | Cu | ND1 A:His454 | 4.14 | Cu | CD2 A:His454 | 2.93 | Cu | CE1 A:His454 | 3.07 | Cu | CG A:His454 | 4.11 | Cu | CU A:Cu503 | 3.95 | Cu | CU A:Cu504 | 3.74 | Cu | O1 A:Per512 | 2.05 | Cu | O2 A:Per512 | 1.87 | Cu | O A:Hoh675 | 4.19 |
| interactive model:
| Copper binding site 3 out of 12 in 3t6x
|  Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Copper in the PDB 3t6x. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Copper atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: His65, A: His110, A: His112, A: His400, A: His402, A: Phe450, A: His452, A: His454, A: Cu502, A: Cu504, A: Per512, A: Hoh675, | conact list:
Atom | Atom | Distance (A) | Cu | NE2 A:His65 | 4.41 | Cu | CD2 A:His65 | 4.26 | Cu | CE1 A:His65 | 4.99 | Cu | CG A:His65 | 4.80 | Cu | NE2 A:His110 | 4.98 | Cu | CE1 A:His110 | 4.53 | Cu | NE2 A:His112 | 2.15 | Cu | ND1 A:His112 | 4.27 | Cu | CD2 A:His112 | 3.02 | Cu | CE1 A:His112 | 3.21 | Cu | CG A:His112 | 4.22 | Cu | NE2 A:His400 | 4.27 | Cu | CD2 A:His400 | 3.71 | Cu | CG A:His400 | 4.91 | Cu | NE2 A:His402 | 2.02 | Cu | ND1 A:His402 | 4.02 | Cu | CD2 A:His402 | 3.13 | Cu | CE1 A:His402 | 2.85 | Cu | CG A:His402 | 4.17 | Cu | CB A:Phe450 | 4.88 | Cu | CD2 A:Phe450 | 4.46 | Cu | NE2 A:His452 | 2.09 | Cu | ND1 A:His452 | 4.11 | Cu | CD2 A:His452 | 3.21 | Cu | CE1 A:His452 | 2.93 | Cu | CG A:His452 | 4.28 | Cu | NE2 A:His454 | 4.67 | Cu | CD2 A:His454 | 4.81 | Cu | CU A:Cu502 | 3.95 | Cu | CU A:Cu504 | 3.87 | Cu | O1 A:Per512 | 2.14 | Cu | O2 A:Per512 | 2.37 | Cu | O A:Hoh675 | 3.79 |
| interactive model:
| Copper binding site 4 out of 12 in 3t6x
|  Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 4 of Copper in the PDB 3t6x. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Copper atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: His65, A: Trp66, A: His67, A: Gly68, A: His400, A: His402, A: Cu502, A: Cu503, A: Per512, A: Hoh769, A: Hoh939, A: Hoh1106, | conact list:
Atom | Atom | Distance (A) | Cu | NE2 A:His65 | 1.96 | Cu | ND1 A:His65 | 3.96 | Cu | CD2 A:His65 | 2.88 | Cu | CE1 A:His65 | 2.92 | Cu | CG A:His65 | 3.98 | Cu | O A:Trp66 | 4.91 | Cu | NE2 A:His67 | 4.50 | Cu | N A:His67 | 4.89 | Cu | CB A:His67 | 4.10 | Cu | ND1 A:His67 | 3.50 | Cu | CD2 A:His67 | 4.41 | Cu | C A:His67 | 4.33 | Cu | CE1 A:His67 | 3.98 | Cu | CG A:His67 | 3.80 | Cu | CA A:His67 | 3.79 | Cu | N A:Gly68 | 3.86 | Cu | CA A:Gly68 | 4.99 | Cu | NE2 A:His400 | 1.92 | Cu | ND1 A:His400 | 4.01 | Cu | CD2 A:His400 | 2.88 | Cu | CE1 A:His400 | 2.93 | Cu | CG A:His400 | 4.02 | Cu | NE2 A:His402 | 3.45 | Cu | N A:His402 | 4.85 | Cu | CB A:His402 | 4.52 | Cu | ND1 A:His402 | 3.95 | Cu | CD2 A:His402 | 3.39 | Cu | CE1 A:His402 | 3.80 | Cu | CG A:His402 | 3.70 | Cu | CA A:His402 | 4.39 | Cu | CU A:Cu502 | 3.74 | Cu | CU A:Cu503 | 3.87 | Cu | O1 A:Per512 | 3.94 | Cu | O2 A:Per512 | 2.51 | Cu | O A:Hoh769 | 4.68 | Cu | O A:Hoh939 | 4.59 | Cu | O A:Hoh1106 | 2.24 |
| interactive model:
| Copper binding site 5 out of 12 in 3t6x
|  Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 5 of Copper in the PDB 3t6x. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Copper atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: B: Phe341, B: Gly394, B: His397, B: Pro398, B: Cys453, B: Ile455, B: His458, B: Phe463, | conact list:
Atom | Atom | Distance (A) | Cu | CZ B:Phe341 | 4.86 | Cu | CE1 B:Phe341 | 4.83 | Cu | O B:Gly394 | 4.93 | Cu | NE2 B:His397 | 3.14 | Cu | CB B:His397 | 3.51 | Cu | ND1 B:His397 | 4.19 | Cu | CD2 B:His397 | 2.09 | Cu | CE1 B:His397 | 4.22 | Cu | CG B:His397 | 3.03 | Cu | CA B:His397 | 4.05 | Cu | CD B:Pro398 | 4.78 | Cu | CB B:Cys453 | 3.27 | Cu | SG B:Cys453 | 2.04 | Cu | CA B:Cys453 | 4.64 | Cu | N B:Ile455 | 4.81 | Cu | CB B:Ile455 | 3.84 | Cu | CD1 B:Ile455 | 3.69 | Cu | CG2 B:Ile455 | 4.67 | Cu | CG1 B:Ile455 | 3.92 | Cu | CA B:Ile455 | 4.91 | Cu | NE2 B:His458 | 4.14 | Cu | CB B:His458 | 3.33 | Cu | ND1 B:His458 | 2.04 | Cu | CD2 B:His458 | 4.16 | Cu | CE1 B:His458 | 3.04 | Cu | CG B:His458 | 3.02 | Cu | CA B:His458 | 4.86 | Cu | CE2 B:Phe463 | 3.97 | Cu | CD2 B:Phe463 | 3.66 | Cu | CG B:Phe463 | 4.90 |
| interactive model:
| Copper binding site 6 out of 12 in 3t6x
|  Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 6 of Copper in the PDB 3t6x. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Copper atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: B: His65, B: His67, B: Trp108, B: His110, B: Ala244, B: His400, B: His452, B: His454, B: Cu503, B: Cu504, B: Per514, B: Hoh996, | conact list:
Atom | Atom | Distance (A) | Cu | NE2 B:His65 | 4.39 | Cu | CD2 B:His65 | 3.88 | Cu | NE2 B:His67 | 4.03 | Cu | CB B:His67 | 3.54 | Cu | ND1 B:His67 | 2.00 | Cu | CD2 B:His67 | 4.16 | Cu | CE1 B:His67 | 2.86 | Cu | CG B:His67 | 3.10 | Cu | CA B:His67 | 4.58 | Cu | CZ2 B:Trp108 | 4.15 | Cu | CE2 B:Trp108 | 4.51 | Cu | NE1 B:Trp108 | 4.58 | Cu | CH2 B:Trp108 | 4.86 | Cu | NE2 B:His110 | 2.22 | Cu | ND1 B:His110 | 4.12 | Cu | CD2 B:His110 | 3.39 | Cu | CE1 B:His110 | 2.91 | Cu | CG B:His110 | 4.38 | Cu | CB B:Ala244 | 4.54 | Cu | NE2 B:His400 | 4.09 | Cu | CD2 B:His400 | 3.95 | Cu | CE1 B:His400 | 4.99 | Cu | CG B:His400 | 4.85 | Cu | CE1 B:His452 | 5.00 | Cu | NE2 B:His454 | 2.01 | Cu | ND1 B:His454 | 4.10 | Cu | CD2 B:His454 | 3.01 | Cu | CE1 B:His454 | 2.98 | Cu | CG B:His454 | 4.15 | Cu | CU B:Cu503 | 4.06 | Cu | CU B:Cu504 | 3.75 | Cu | O1 B:Per514 | 2.15 | Cu | O2 B:Per514 | 2.18 | Cu | O B:Hoh996 | 4.21 |
| interactive model:
| Copper binding site 7 out of 12 in 3t6x
|  Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 7 of Copper in the PDB 3t6x. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Copper atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: B: His65, B: His110, B: His112, B: His400, B: His402, B: Phe450, B: His452, B: His454, B: Cu502, B: Cu504, B: Per514, B: Hoh996, | conact list:
Atom | Atom | Distance (A) | Cu | NE2 B:His65 | 4.37 | Cu | CD2 B:His65 | 4.17 | Cu | CG B:His65 | 4.84 | Cu | CE1 B:His110 | 4.54 | Cu | NE2 B:His112 | 2.04 | Cu | ND1 B:His112 | 4.12 | Cu | CD2 B:His112 | 3.04 | Cu | CE1 B:His112 | 3.01 | Cu | CG B:His112 | 4.17 | Cu | NE2 B:His400 | 4.43 | Cu | CD2 B:His400 | 3.90 | Cu | NE2 B:His402 | 2.03 | Cu | ND1 B:His402 | 4.05 | Cu | CD2 B:His402 | 3.13 | Cu | CE1 B:His402 | 2.88 | Cu | CG B:His402 | 4.20 | Cu | CB B:Phe450 | 4.88 | Cu | CD2 B:Phe450 | 4.50 | Cu | NE2 B:His452 | 2.06 | Cu | ND1 B:His452 | 4.11 | Cu | CD2 B:His452 | 3.12 | Cu | CE1 B:His452 | 2.96 | Cu | CG B:His452 | 4.22 | Cu | NE2 B:His454 | 4.60 | Cu | CD2 B:His454 | 4.85 | Cu | CU B:Cu502 | 4.06 | Cu | CU B:Cu504 | 4.05 | Cu | O1 B:Per514 | 2.01 | Cu | O2 B:Per514 | 2.33 | Cu | O B:Hoh996 | 3.64 |
| interactive model:
| Copper binding site 8 out of 12 in 3t6x
|  Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 8 of Copper in the PDB 3t6x. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Copper atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: B: His65, B: Trp66, B: His67, B: Gly68, B: His400, B: Leu401, B: His402, B: Cu502, B: Cu503, B: Per514, B: Hoh665, B: Hoh723, B: Hoh1037, | conact list:
Atom | Atom | Distance (A) | Cu | NE2 B:His65 | 2.02 | Cu | ND1 B:His65 | 4.11 | Cu | CD2 B:His65 | 2.92 | Cu | CE1 B:His65 | 3.05 | Cu | CG B:His65 | 4.09 | Cu | O B:Trp66 | 4.92 | Cu | NE2 B:His67 | 4.42 | Cu | N B:His67 | 4.70 | Cu | CB B:His67 | 3.91 | Cu | ND1 B:His67 | 3.35 | Cu | CD2 B:His67 | 4.28 | Cu | C B:His67 | 4.19 | Cu | CE1 B:His67 | 3.89 | Cu | CG B:His67 | 3.62 | Cu | CA B:His67 | 3.61 | Cu | N B:Gly68 | 3.79 | Cu | CA B:Gly68 | 4.87 | Cu | NE2 B:His400 | 2.03 | Cu | ND1 B:His400 | 4.12 | Cu | CD2 B:His400 | 3.01 | Cu | CE1 B:His400 | 3.01 | Cu | CG B:His400 | 4.15 | Cu | O B:Leu401 | 4.89 | Cu | NE2 B:His402 | 3.53 | Cu | N B:His402 | 4.81 | Cu | CB B:His402 | 4.63 | Cu | ND1 B:His402 | 4.15 | Cu | CD2 B:His402 | 3.42 | Cu | CE1 B:His402 | 3.98 | Cu | CG B:His402 | 3.83 | Cu | CA B:His402 | 4.43 | Cu | CU B:Cu502 | 3.75 | Cu | CU B:Cu503 | 4.05 | Cu | O1 B:Per514 | 3.80 | Cu | O2 B:Per514 | 2.38 | Cu | O B:Hoh665 | 4.45 | Cu | O B:Hoh723 | 4.53 | Cu | O B:Hoh1037 | 2.06 |
| interactive model:
| Copper binding site 9 out of 12 in 3t6x
|  Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 9 of Copper in the PDB 3t6x. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Copper atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: C: Gly394, C: His397, C: Pro398, C: Cys453, C: Ile455, C: His458, C: Phe463, | conact list:
Atom | Atom | Distance (A) | Cu | O C:Gly394 | 4.53 | Cu | NE2 C:His397 | 4.13 | Cu | N C:His397 | 4.82 | Cu | CB C:His397 | 3.35 | Cu | ND1 C:His397 | 2.10 | Cu | CD2 C:His397 | 4.14 | Cu | C C:His397 | 4.88 | Cu | CE1 C:His397 | 3.05 | Cu | CG C:His397 | 3.03 | Cu | CA C:His397 | 3.87 | Cu | CD C:Pro398 | 4.55 | Cu | CB C:Cys453 | 3.34 | Cu | SG C:Cys453 | 2.10 | Cu | CA C:Cys453 | 4.71 | Cu | O C:Ile455 | 4.87 | Cu | N C:Ile455 | 4.73 | Cu | CB C:Ile455 | 3.87 | Cu | CD1 C:Ile455 | 3.81 | Cu | CG2 C:Ile455 | 4.77 | Cu | CG1 C:Ile455 | 4.12 | Cu | CA C:Ile455 | 4.85 | Cu | NE2 C:His458 | 4.24 | Cu | CB C:His458 | 3.39 | Cu | ND1 C:His458 | 2.14 | Cu | CD2 C:His458 | 4.26 | Cu | CE1 C:His458 | 3.13 | Cu | CG C:His458 | 3.11 | Cu | CA C:His458 | 4.90 | Cu | CE2 C:Phe463 | 4.17 | Cu | CD2 C:Phe463 | 3.82 |
| interactive model:
| Copper binding site 10 out of 12 in 3t6x
|  Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 10 of Copper in the PDB 3t6x. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Copper atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: C: His65, C: His67, C: Trp108, C: His110, C: Ala244, C: His400, C: His452, C: His454, C: Cu503, C: Cu504, C: Per510, C: Hoh804, | conact list:
Atom | Atom | Distance (A) | Cu | NE2 C:His65 | 4.12 | Cu | CD2 C:His65 | 3.73 | Cu | CG C:His65 | 4.98 | Cu | NE2 C:His67 | 4.22 | Cu | CB C:His67 | 3.56 | Cu | ND1 C:His67 | 2.16 | Cu | CD2 C:His67 | 4.31 | Cu | CE1 C:His67 | 3.07 | Cu | CG C:His67 | 3.21 | Cu | CA C:His67 | 4.63 | Cu | CZ2 C:Trp108 | 4.12 | Cu | CE2 C:Trp108 | 4.47 | Cu | NE1 C:Trp108 | 4.54 | Cu | CH2 C:Trp108 | 4.83 | Cu | NE2 C:His110 | 2.27 | Cu | ND1 C:His110 | 4.27 | Cu | CD2 C:His110 | 3.38 | Cu | CE1 C:His110 | 3.08 | Cu | CG C:His110 | 4.45 | Cu | CB C:Ala244 | 4.56 | Cu | NE2 C:His400 | 4.10 | Cu | CD2 C:His400 | 3.98 | Cu | CE1 C:His400 | 4.94 | Cu | CG C:His400 | 4.80 | Cu | CE1 C:His452 | 4.98 | Cu | NE2 C:His454 | 2.13 | Cu | ND1 C:His454 | 4.22 | Cu | CD2 C:His454 | 3.13 | Cu | CE1 C:His454 | 3.09 | Cu | CG C:His454 | 4.27 | Cu | CU C:Cu503 | 4.09 | Cu | CU C:Cu504 | 3.78 | Cu | O1 C:Per510 | 2.02 | Cu | O2 C:Per510 | 2.16 | Cu | O C:Hoh804 | 4.46 |
| interactive model:
| Copper binding site 11 out of 12 in 3t6x
|  Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 11 of Copper in the PDB 3t6x. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Copper atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: C: His65, C: His110, C: His112, C: His400, C: His402, C: Phe450, C: His452, C: His454, C: Cu502, C: Cu504, C: Per510, C: Hoh804, | conact list:
Atom | Atom | Distance (A) | Cu | NE2 C:His65 | 4.32 | Cu | CD2 C:His65 | 4.23 | Cu | CE1 C:His65 | 4.96 | Cu | CG C:His65 | 4.86 | Cu | CE1 C:His110 | 4.70 | Cu | NE2 C:His112 | 2.10 | Cu | ND1 C:His112 | 4.21 | Cu | CD2 C:His112 | 3.00 | Cu | CE1 C:His112 | 3.14 | Cu | CG C:His112 | 4.19 | Cu | NE2 C:His400 | 4.37 | Cu | CD2 C:His400 | 3.86 | Cu | NE2 C:His402 | 2.00 | Cu | ND1 C:His402 | 3.96 | Cu | CD2 C:His402 | 3.18 | Cu | CE1 C:His402 | 2.75 | Cu | CG C:His402 | 4.19 | Cu | CB C:Phe450 | 4.80 | Cu | CD2 C:Phe450 | 4.40 | Cu | NE2 C:His452 | 2.02 | Cu | ND1 C:His452 | 4.12 | Cu | CD2 C:His452 | 2.98 | Cu | CE1 C:His452 | 3.02 | Cu | CG C:His452 | 4.14 | Cu | NE2 C:His454 | 4.75 | Cu | CD2 C:His454 | 4.92 | Cu | CU C:Cu502 | 4.09 | Cu | CU C:Cu504 | 4.12 | Cu | O1 C:Per510 | 2.54 | Cu | O2 C:Per510 | 2.02 | Cu | O C:Hoh804 | 3.95 |
| interactive model:
| Copper binding site 12 out of 12 in 3t6x
|  Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 12 of Copper in the PDB 3t6x. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Copper atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: C: His65, C: Trp66, C: His67, C: Gly68, C: His400, C: Leu401, C: His402, C: Cu502, C: Cu503, C: Per510, C: Hoh756, C: Hoh935, C: Hoh1078, | conact list:
Atom | Atom | Distance (A) | Cu | NE2 C:His65 | 1.96 | Cu | ND1 C:His65 | 3.97 | Cu | CD2 C:His65 | 3.02 | Cu | CE1 C:His65 | 2.84 | Cu | CG C:His65 | 4.09 | Cu | O C:Trp66 | 4.84 | Cu | NE2 C:His67 | 4.51 | Cu | N C:His67 | 4.79 | Cu | CB C:His67 | 3.98 | Cu | ND1 C:His67 | 3.46 | Cu | CD2 C:His67 | 4.37 | Cu | C C:His67 | 4.33 | Cu | CE1 C:His67 | 4.00 | Cu | CG C:His67 | 3.70 | Cu | CA C:His67 | 3.74 | Cu | N C:Gly68 | 3.93 | Cu | NE2 C:His400 | 1.95 | Cu | ND1 C:His400 | 3.99 | Cu | CD2 C:His400 | 2.99 | Cu | CE1 C:His400 | 2.87 | Cu | CG C:His400 | 4.08 | Cu | O C:Leu401 | 4.88 | Cu | NE2 C:His402 | 3.46 | Cu | N C:His402 | 4.73 | Cu | CB C:His402 | 4.53 | Cu | ND1 C:His402 | 4.02 | Cu | CD2 C:His402 | 3.38 | Cu | CE1 C:His402 | 3.87 | Cu | CG C:His402 | 3.75 | Cu | CA C:His402 | 4.33 | Cu | CU C:Cu502 | 3.78 | Cu | CU C:Cu503 | 4.12 | Cu | O1 C:Per510 | 2.39 | Cu | O2 C:Per510 | 3.82 | Cu | O C:Hoh756 | 4.44 | Cu | O C:Hoh935 | 4.38 | Cu | O C:Hoh1078 | 2.11 |
| interactive model:
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