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Copper in PDB 3re7: Copper (II) Loaded Bullfrog Ferritin M Chain

Enzymatic activity of Copper (II) Loaded Bullfrog Ferritin M Chain

All present enzymatic activity of Copper (II) Loaded Bullfrog Ferritin M Chain:
1.16.3.1;

Protein crystallography data

The structure of Copper (II) Loaded Bullfrog Ferritin M Chain, PDB code: 3re7 was solved by I.Bertini, D.Lalli, S.Mangani, C.Pozzi, C.Rosa, P.Turano, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.50 / 2.82
Space group P 31 2 1 1
Cell size a, b, c (Å), α, β, γ (°) 210.205, 210.205, 322.803, 90.00, 90.00, 120.00
R / Rfree (%) 17 / 22.4

Copper Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80; Page 9, Binding sites: 81 - 90; Page 10, Binding sites: 91 - 100; Page 11, Binding sites: 101 - 110; Page 12, Binding sites: 111 - 120; Page 13, Binding sites: 121 - 130; Page 14, Binding sites: 131 - 140; Page 15, Binding sites: 141 - 150; Page 16, Binding sites: 151 - 160; Page 17, Binding sites: 161 - 162;

Binding sites:

The binding sites of Copper atom in the Copper (II) Loaded Bullfrog Ferritin M Chain (pdb code 3re7). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 162 binding sites of Copper where determined in the Copper (II) Loaded Bullfrog Ferritin M Chain, PDB code: 3re7:
Jump to Copper binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Copper binding site 1 out of 162 in 3re7

Go back to Copper Binding Sites List in 3re7
Copper binding site 1 out of 162 in the Copper (II) Loaded Bullfrog Ferritin M Chain


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Copper (II) Loaded Bullfrog Ferritin M Chain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu181

b:65.2
occ:0.50
NE2 A:HIS55 2.0 55.4 1.0
OE2 A:GLU59 2.5 42.8 1.0
OE1 A:GLU104 2.7 48.4 1.0
CE1 A:HIS55 2.7 56.9 1.0
OE2 A:GLU104 2.9 43.3 1.0
OD2 A:ASP141 3.1 41.3 1.0
CD A:GLU59 3.1 41.0 1.0
CD2 A:HIS55 3.1 54.6 1.0
CD A:GLU104 3.2 44.6 1.0
O A:HOH339 3.3 41.6 1.0
CG A:GLU59 3.7 36.9 1.0
OE1 A:GLN138 3.8 40.6 1.0
OE1 A:GLU59 3.8 39.6 1.0
ND1 A:HIS55 3.8 55.3 1.0
CU A:CU182 3.9 65.6 0.6
OE1 A:GLU137 4.0 61.5 1.0
CG A:HIS55 4.0 49.1 1.0
CG A:ASP141 4.2 38.9 1.0
CE1 A:HIS62 4.3 42.7 1.0
ND1 A:HIS62 4.6 43.1 1.0
CD A:GLN138 4.7 37.2 1.0
CG A:GLU104 4.7 37.5 1.0
CB A:ASP141 4.8 32.8 1.0
O A:HOH531 4.9 44.3 1.0

Copper binding site 2 out of 162 in 3re7

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Copper binding site 2 out of 162 in the Copper (II) Loaded Bullfrog Ferritin M Chain


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Copper (II) Loaded Bullfrog Ferritin M Chain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu182

b:65.6
occ:0.60
OE1 A:GLU59 2.0 39.6 1.0
ND1 A:HIS62 2.6 43.1 1.0
OE1 A:GLU24 2.7 42.0 1.0
CD A:GLU59 2.9 41.0 1.0
O A:HOH531 2.9 44.3 1.0
OE2 A:GLU59 3.1 42.8 1.0
CE1 A:HIS62 3.3 42.7 1.0
OE2 A:GLU24 3.4 42.9 1.0
OE1 A:GLN138 3.4 40.6 1.0
CD A:GLU24 3.4 39.2 1.0
CG A:HIS62 3.6 39.5 1.0
CU A:CU181 3.9 65.2 0.5
CB A:HIS62 4.0 36.2 1.0
CG1 A:VAL107 4.1 23.5 1.0
CG A:GLU59 4.3 36.9 1.0
NE2 A:HIS62 4.4 43.9 1.0
CD A:GLN138 4.5 37.2 1.0
CD2 A:HIS62 4.6 41.5 1.0
CD2 A:TYR134 4.7 37.7 1.0
CB A:GLU59 4.8 37.1 1.0
CG A:GLU24 4.8 31.6 1.0
CA A:GLU59 4.9 37.0 1.0
CG A:GLN138 5.0 34.6 1.0
CE2 A:TYR134 5.0 36.3 1.0

Copper binding site 3 out of 162 in 3re7

Go back to Copper Binding Sites List in 3re7
Copper binding site 3 out of 162 in the Copper (II) Loaded Bullfrog Ferritin M Chain


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Copper (II) Loaded Bullfrog Ferritin M Chain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu183

b:61.6
occ:0.70
OE2 A:GLU58 2.3 57.1 1.0
NE2 A:HIS62 2.7 43.9 1.0
CG A:GLU137 3.2 47.0 1.0
CD A:GLU137 3.5 58.5 1.0
CD A:GLU58 3.5 54.6 1.0
CD2 A:HIS62 3.6 41.5 1.0
CE1 A:HIS62 3.6 42.7 1.0
OE1 A:GLU137 3.8 61.5 1.0
OE1 A:GLU58 4.1 54.0 1.0
CB A:GLU137 4.1 39.7 1.0
OE2 A:GLU137 4.2 61.5 1.0
CG A:GLU58 4.7 46.6 1.0
ND1 A:HIS62 4.8 43.1 1.0
CG A:HIS62 4.8 39.5 1.0
O A:GLU133 4.9 42.0 1.0
NZ A:LYS65 4.9 53.1 1.0

Copper binding site 4 out of 162 in 3re7

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Copper binding site 4 out of 162 in the Copper (II) Loaded Bullfrog Ferritin M Chain


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Copper (II) Loaded Bullfrog Ferritin M Chain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu184

b:57.7
occ:0.70
NE2 A:HIS46 2.3 44.1 1.0
O A:HOH595 2.8 29.7 1.0
CD2 A:HIS46 2.9 39.2 1.0
OE2 A:GLU50 3.5 48.8 1.0
CG A:GLU50 3.5 35.2 1.0
CE1 A:HIS46 3.5 45.8 1.0
CD A:GLU50 3.7 45.3 1.0
CG A:HIS46 4.2 37.2 1.0
ND1 A:HIS46 4.5 42.1 1.0
OE1 A:GLU50 4.5 48.6 1.0

Copper binding site 5 out of 162 in 3re7

Go back to Copper Binding Sites List in 3re7
Copper binding site 5 out of 162 in the Copper (II) Loaded Bullfrog Ferritin M Chain


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 5 of Copper (II) Loaded Bullfrog Ferritin M Chain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu190

b:37.7
occ:0.80
NE2 A:HIS170 2.1 35.4 1.0
NE2 J:HIS170 2.2 39.1 1.0
NE2 O:HIS170 2.3 41.2 1.0
NE2 R:HIS170 2.5 37.3 1.0
CE1 J:HIS170 2.7 39.0 1.0
CE1 A:HIS170 2.8 34.3 1.0
CE1 O:HIS170 2.9 38.1 1.0
CE1 R:HIS170 2.9 34.0 1.0
CD2 A:HIS170 3.4 34.6 1.0
CD2 J:HIS170 3.5 38.5 1.0
CD2 O:HIS170 3.6 38.8 1.0
CD2 R:HIS170 3.7 35.6 1.0
ND1 J:HIS170 3.9 38.4 1.0
ND1 A:HIS170 4.0 32.7 1.0
ND1 O:HIS170 4.1 36.4 1.0
ND1 R:HIS170 4.2 34.2 1.0
CG A:HIS170 4.3 33.4 1.0
CG J:HIS170 4.4 38.5 1.0
CG O:HIS170 4.5 35.4 1.0
CG R:HIS170 4.6 33.4 1.0

Copper binding site 6 out of 162 in 3re7

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Copper binding site 6 out of 162 in the Copper (II) Loaded Bullfrog Ferritin M Chain


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 6 of Copper (II) Loaded Bullfrog Ferritin M Chain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu191

b:41.9
occ:0.50
NE2 A:HIS115 1.9 38.5 1.0
SG A:CYS127 2.3 46.5 1.0
CE1 A:HIS115 2.3 39.7 1.0
OE2 A:GLU131 2.4 59.7 1.0
CU H:CU192 3.1 69.4 0.5
CD2 A:HIS115 3.2 38.9 1.0
CB A:CYS127 3.3 39.8 1.0
CU A:CU192 3.4 58.1 0.6
ND1 A:HIS115 3.6 37.7 1.0
CD A:GLU131 3.6 57.0 1.0
CG A:HIS115 4.1 36.2 1.0
OE1 A:GLU131 4.4 59.5 1.0
CA A:CYS127 4.4 39.6 1.0
OG1 A:THR119 4.4 45.8 1.0
OE2 H:GLU131 4.6 50.4 1.0
CG A:GLU131 4.7 48.6 1.0
C A:CYS127 4.7 39.5 1.0
CB X:PRO124 4.8 32.0 1.0
O A:CYS127 4.9 40.5 1.0
SG X:CYS127 5.0 48.5 1.0

Copper binding site 7 out of 162 in 3re7

Go back to Copper Binding Sites List in 3re7
Copper binding site 7 out of 162 in the Copper (II) Loaded Bullfrog Ferritin M Chain


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 7 of Copper (II) Loaded Bullfrog Ferritin M Chain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu185

b:58.6
occ:0.60
OE2 A:GLU64 2.4 53.6 1.0
OE1 A:GLU61 2.7 62.6 1.0
NE2 G:HIS57 2.7 55.6 1.0
CD A:GLU64 3.3 53.4 1.0
CE1 G:HIS57 3.6 54.3 1.0
CD2 G:HIS57 3.6 53.0 1.0
OE1 A:GLU64 3.7 55.0 1.0
NH2 G:ARG60 3.8 75.5 1.0
CD A:GLU61 3.9 59.5 1.0
OE2 A:GLU61 4.5 61.8 1.0
CG A:GLU64 4.6 44.2 1.0
ND1 G:HIS57 4.7 53.8 1.0
CG G:HIS57 4.7 47.2 1.0
NZ G:LYS53 4.8 50.3 1.0
CB A:GLU64 4.9 37.4 1.0
CA A:GLU61 5.0 38.0 1.0

Copper binding site 8 out of 162 in 3re7

Go back to Copper Binding Sites List in 3re7
Copper binding site 8 out of 162 in the Copper (II) Loaded Bullfrog Ferritin M Chain


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 8 of Copper (II) Loaded Bullfrog Ferritin M Chain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu192

b:58.1
occ:0.60
SG X:CYS127 1.9 48.5 1.0
OE2 A:GLU131 2.6 59.7 1.0
CD A:GLU131 3.0 57.0 1.0
OE1 A:GLU131 3.0 59.5 1.0
CB X:CYS127 3.1 37.8 1.0
CU A:CU191 3.4 41.9 0.5
CU X:CU191 3.4 51.3 0.7
CU H:CU192 3.5 69.4 0.5
OE1 X:GLU131 3.5 54.0 1.0
CD X:GLU131 3.9 49.2 1.0
OE2 X:GLU131 4.0 47.1 1.0
CU H:CU177 4.0 44.1 0.5
C X:CYS127 4.1 36.8 1.0
N X:ASP128 4.1 36.8 1.0
CG A:GLU131 4.1 48.6 1.0
O X:PRO124 4.2 32.7 1.0
CA X:CYS127 4.2 37.4 1.0
SG A:CYS127 4.4 46.5 1.0
O X:CYS127 4.5 36.5 1.0
NE2 A:HIS115 4.6 38.5 1.0
CA X:PRO124 4.7 32.2 1.0
CA X:ASP128 4.7 36.6 1.0
CE1 A:HIS115 4.8 39.7 1.0
C X:PRO124 4.9 32.4 1.0
OE1 H:GLU131 4.9 52.8 1.0
CG X:GLU131 5.0 41.4 1.0
CB X:ASP128 5.0 37.1 1.0

Copper binding site 9 out of 162 in 3re7

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Copper binding site 9 out of 162 in the Copper (II) Loaded Bullfrog Ferritin M Chain


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 9 of Copper (II) Loaded Bullfrog Ferritin M Chain within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu181

b:67.5
occ:0.60
OE2 B:GLU59 2.1 51.5 1.0
NE2 B:HIS55 2.3 62.7 1.0
OE2 B:GLU104 2.5 45.9 1.0
OE1 B:GLU104 2.7 50.0 1.0
CD B:GLU59 2.8 50.0 1.0
CD2 B:HIS55 2.9 60.4 1.0
O B:HOH188 2.9 46.5 1.0
CD B:GLU104 3.0 45.5 1.0
CG B:GLU59 3.1 47.7 1.0
CE1 B:HIS55 3.5 63.5 1.0
OE1 B:GLU59 3.9 48.4 1.0
CE2 B:TYR31 4.0 43.9 1.0
CG B:HIS55 4.2 55.6 1.0
OE1 B:GLN138 4.3 44.0 1.0
OD2 B:ASP141 4.3 47.0 1.0
CG B:GLU104 4.4 41.3 1.0
ND1 B:HIS55 4.4 59.6 1.0
OH B:TYR31 4.5 48.1 1.0
CB B:GLU59 4.6 47.3 1.0
CZ B:TYR31 4.7 46.5 1.0
CU B:CU182 4.7 63.6 0.7
CD2 B:TYR31 4.9 40.2 1.0
CE1 B:HIS62 4.9 55.2 1.0
O B:HIS55 4.9 49.3 1.0
NE2 B:GLN138 5.0 42.4 1.0
CD B:GLN138 5.0 41.7 1.0

Copper binding site 10 out of 162 in 3re7

Go back to Copper Binding Sites List in 3re7
Copper binding site 10 out of 162 in the Copper (II) Loaded Bullfrog Ferritin M Chain


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 10 of Copper (II) Loaded Bullfrog Ferritin M Chain within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu182

b:63.6
occ:0.70
OE1 B:GLU59 2.4 48.4 1.0
ND1 B:HIS62 2.6 54.2 1.0
OE2 B:GLU24 2.6 49.5 1.0
OE1 B:GLU24 2.7 46.1 1.0
CD B:GLU24 3.0 45.4 1.0
CD B:GLU59 3.2 50.0 1.0
CE1 B:HIS62 3.3 55.2 1.0
CG B:HIS62 3.3 49.6 1.0
OE2 B:GLU59 3.4 51.5 1.0
OE1 B:GLN138 3.4 44.0 1.0
CB B:HIS62 3.7 46.4 1.0
CG1 B:VAL107 3.9 35.5 1.0
O B:HOH188 4.2 46.5 1.0
NE2 B:HIS62 4.3 55.4 1.0
CD2 B:HIS62 4.3 52.3 1.0
CG B:GLU24 4.4 38.8 1.0
CD2 B:TYR134 4.5 40.5 1.0
CG B:GLU59 4.5 47.7 1.0
CD B:GLN138 4.6 41.7 1.0
CU B:CU181 4.7 67.5 0.6
CE2 B:TYR134 4.8 41.7 1.0
CA B:GLU59 5.0 47.1 1.0

Reference:

I.Bertini, D.Lalli, S.Mangani, C.Pozzi, C.Rosa, E.C.Theil, P.Turano. Structural Insights Into the Ferroxidase Site of Ferritins From Higher Eukaryotes. J.Am.Chem.Soc. V. 134 6169 2012.
ISSN: ISSN 0002-7863
PubMed: 22424302
DOI: 10.1021/JA210084N
Page generated: Sun Dec 13 11:11:35 2020

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