Copper in PDB 3qvz: Crystal Structure of the Zn-RIDC1 Complex Stabilized By Bmoe Crosslinks Cocrystallized in the Presence of Cu(II)

The structure of Crystal Structure of the Zn-RIDC1 Complex Stabilized By Bmoe Crosslinks Cocrystallized in the Presence of Cu(II), PDB code: 3qvz was solved by E.N.Salgado, F.A.Tezcan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.86 / 2.64
Space group	P 61
Cell size a, b, c (Å), α, β, γ (°)	52.525, 52.525, 255.717, 90.00, 90.00, 120.00
R / Rfree (%)	26.1 / 30.6

The structure of Crystal Structure of the Zn-RIDC1 Complex Stabilized By Bmoe Crosslinks Cocrystallized in the Presence of Cu(II) also contains other interesting chemical elements:

Iron	(Fe)	4 atoms
Zinc	(Zn)	5 atoms

The binding sites of Copper atom in the Crystal Structure of the Zn-RIDC1 Complex Stabilized By Bmoe Crosslinks Cocrystallized in the Presence of Cu(II) (pdb code 3qvz). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 8 binding sites of Copper where determined in the Crystal Structure of the Zn-RIDC1 Complex Stabilized By Bmoe Crosslinks Cocrystallized in the Presence of Cu(II), PDB code: 3qvz:
Jump to Copper binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Copper binding site 1 out of 8 in the Crystal Structure of the Zn-RIDC1 Complex Stabilized By Bmoe Crosslinks Cocrystallized in the Presence of Cu(II)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of the Zn-RIDC1 Complex Stabilized By Bmoe Crosslinks Cocrystallized in the Presence of Cu(II) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu107 b:0.7 occ:1.00 N A:ALA1 1.9 25.8 1.0 OD2 A:ASP39 2.1 26.3 1.0 O A:ALA1 2.1 26.3 1.0 OD1 A:ASP39 2.5 26.7 1.0 CG A:ASP39 2.6 23.7 1.0 C A:ALA1 2.7 25.8 1.0 CA A:ALA1 2.7 25.9 1.0 N A:ASP2 3.9 25.1 1.0 CB A:ALA1 4.0 25.7 1.0 CB A:ASP39 4.1 20.3 1.0 ND2 A:ASN6 4.4 24.9 1.0 O A:ASP39 4.5 19.9 1.0 CA A:ASP2 4.8 24.9 1.0 C A:ASP39 5.0 20.0 1.0

Copper binding site 2 out of 8 in the Crystal Structure of the Zn-RIDC1 Complex Stabilized By Bmoe Crosslinks Cocrystallized in the Presence of Cu(II)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Crystal Structure of the Zn-RIDC1 Complex Stabilized By Bmoe Crosslinks Cocrystallized in the Presence of Cu(II) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu108 b:94.5 occ:1.00 CU A:CU110 2.6 0.0 1.0 OD2 A:ASP5 2.8 28.6 1.0 CG A:ASP5 3.2 25.2 1.0 CU A:CU109 3.2 94.6 1.0 OD1 A:ASP5 3.3 27.8 1.0 OD2 A:ASP2 3.5 28.0 1.0 CG A:ASP2 4.1 26.2 1.0 CB A:ASP2 4.3 25.1 1.0 CB A:ASP5 4.4 22.6 1.0 N A:ASP2 4.5 25.1 1.0

Copper binding site 3 out of 8 in the Crystal Structure of the Zn-RIDC1 Complex Stabilized By Bmoe Crosslinks Cocrystallized in the Presence of Cu(II)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Crystal Structure of the Zn-RIDC1 Complex Stabilized By Bmoe Crosslinks Cocrystallized in the Presence of Cu(II) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu109 b:94.6 occ:1.00 OD1 A:ASP5 2.2 27.8 1.0 CU A:CU110 2.6 0.0 1.0 CG A:ASP5 3.2 25.2 1.0 CU A:CU108 3.2 94.5 1.0 OD2 A:ASP5 3.6 28.6 1.0 CB A:ASP5 4.5 22.6 1.0 OD2 A:ASP2 4.5 28.0 1.0 CA A:ASP5 4.7 22.5 1.0

Copper binding site 4 out of 8 in the Crystal Structure of the Zn-RIDC1 Complex Stabilized By Bmoe Crosslinks Cocrystallized in the Presence of Cu(II)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Crystal Structure of the Zn-RIDC1 Complex Stabilized By Bmoe Crosslinks Cocrystallized in the Presence of Cu(II) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu110 b:0.0 occ:1.00 OD2 A:ASP2 2.2 28.0 1.0 CU A:CU108 2.6 94.5 1.0 CU A:CU109 2.6 94.6 1.0 OD1 A:ASP5 3.2 27.8 1.0 CG A:ASP2 3.3 26.2 1.0 CG A:ASP5 3.8 25.2 1.0 OD1 A:ASP2 4.0 28.4 1.0 OD2 A:ASP5 4.2 28.6 1.0 CB A:ASP2 4.3 25.1 1.0 CB A:ASP5 4.7 22.6 1.0 N A:ASP5 4.9 22.8 1.0

Copper binding site 5 out of 8 in the Crystal Structure of the Zn-RIDC1 Complex Stabilized By Bmoe Crosslinks Cocrystallized in the Presence of Cu(II)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 5 of Crystal Structure of the Zn-RIDC1 Complex Stabilized By Bmoe Crosslinks Cocrystallized in the Presence of Cu(II) within 5.0Å range: probe atom residue distance (Å) B Occ C:Cu107 b:90.4 occ:1.00 OD1 C:ASP5 2.2 27.8 1.0 CU C:CU109 2.6 0.4 1.0 O C:HOH112 2.7 2.0 1.0 CU C:CU108 3.2 98.5 1.0 O C:HOH113 3.2 25.8 1.0 CG C:ASP5 3.2 25.1 1.0 OD2 C:ASP5 3.6 28.7 1.0 OD2 C:ASP2 4.5 27.8 1.0 CB C:ASP5 4.5 22.6 1.0 CA C:ASP5 4.9 22.4 1.0

Copper binding site 6 out of 8 in the Crystal Structure of the Zn-RIDC1 Complex Stabilized By Bmoe Crosslinks Cocrystallized in the Presence of Cu(II)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 6 of Crystal Structure of the Zn-RIDC1 Complex Stabilized By Bmoe Crosslinks Cocrystallized in the Presence of Cu(II) within 5.0Å range: probe atom residue distance (Å) B Occ C:Cu108 b:98.5 occ:1.00 OD1 C:ASP5 2.9 27.8 1.0 O C:HOH112 2.9 2.0 1.0 CU C:CU109 3.1 0.4 1.0 OD2 C:ASP5 3.1 28.7 1.0 CG C:ASP5 3.2 25.1 1.0 CU C:CU107 3.2 90.4 1.0 OD2 C:ASP2 3.9 27.8 1.0 CB C:ASP5 4.3 22.6 1.0 CG C:ASP2 4.4 26.2 1.0 N C:ASP2 4.4 25.1 1.0 CB C:ASP2 4.5 25.1 1.0 CB C:ALA1 4.9 25.6 1.0

Copper binding site 7 out of 8 in the Crystal Structure of the Zn-RIDC1 Complex Stabilized By Bmoe Crosslinks Cocrystallized in the Presence of Cu(II)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 7 of Crystal Structure of the Zn-RIDC1 Complex Stabilized By Bmoe Crosslinks Cocrystallized in the Presence of Cu(II) within 5.0Å range: probe atom residue distance (Å) B Occ C:Cu109 b:0.4 occ:1.00 OD2 C:ASP2 2.3 27.8 1.0 O C:HOH113 2.4 25.8 1.0 CU C:CU107 2.6 90.4 1.0 OD1 C:ASP5 2.9 27.8 1.0 CU C:CU108 3.1 98.5 1.0 CG C:ASP2 3.4 26.2 1.0 OD1 C:ASP2 4.0 28.6 1.0 CG C:ASP5 4.0 25.1 1.0 CB C:ASP2 4.4 25.1 1.0 O C:HOH112 4.7 2.0 1.0 OD2 C:ASP5 4.8 28.7 1.0 CB C:ASP5 4.9 22.6 1.0

Copper binding site 8 out of 8 in the Crystal Structure of the Zn-RIDC1 Complex Stabilized By Bmoe Crosslinks Cocrystallized in the Presence of Cu(II)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 8 of Crystal Structure of the Zn-RIDC1 Complex Stabilized By Bmoe Crosslinks Cocrystallized in the Presence of Cu(II) within 5.0Å range: probe atom residue distance (Å) B Occ C:Cu110 b:86.3 occ:0.50 N C:ALA1 1.9 26.7 1.0 OD2 C:ASP39 2.0 26.3 1.0 O C:ALA1 2.1 27.0 1.0 OD1 C:ASP39 2.5 27.0 1.0 CG C:ASP39 2.6 23.8 1.0 C C:ALA1 2.6 25.8 1.0 CA C:ALA1 2.6 26.1 1.0 N C:ASP2 3.8 25.1 1.0 CB C:ALA1 3.9 25.6 1.0 CB C:ASP39 4.1 20.4 1.0 ND2 C:ASN6 4.3 25.0 1.0 O C:ASP39 4.6 19.8 1.0 CA C:ASP2 4.7 24.9 1.0 C C:ASP39 5.0 19.9 1.0

E.N.Salgado, J.D.Brodin, M.M.To, F.A.Tezcan. Templated Construction of A Zn-Selective Protein Dimerization Motif. Inorg.Chem. V. 50 6323 2011.
ISSN: ISSN 0020-1669
PubMed: 21648390
DOI: 10.1021/IC200746M