Atomistry » Copper » PDB 3mnd-3qjo » 3phm
Atomistry »
  Copper »
    PDB 3mnd-3qjo »
      3phm »

Copper in PDB 3phm: Reduced (Cu+) Peptidylglycine Alpha-Hydroxylating Monooxygenase (Phm)

Enzymatic activity of Reduced (Cu+) Peptidylglycine Alpha-Hydroxylating Monooxygenase (Phm)

All present enzymatic activity of Reduced (Cu+) Peptidylglycine Alpha-Hydroxylating Monooxygenase (Phm):
1.14.17.3;

Protein crystallography data

The structure of Reduced (Cu+) Peptidylglycine Alpha-Hydroxylating Monooxygenase (Phm), PDB code: 3phm was solved by S.T.Prigge, L.M.Amzel, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 2.10
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 69.519, 68.770, 82.417, 90.00, 90.00, 90.00
R / Rfree (%) 20 / 25.7

Other elements in 3phm:

The structure of Reduced (Cu+) Peptidylglycine Alpha-Hydroxylating Monooxygenase (Phm) also contains other interesting chemical elements:

Nickel (Ni) 1 atom

Copper Binding Sites:

The binding sites of Copper atom in the Reduced (Cu+) Peptidylglycine Alpha-Hydroxylating Monooxygenase (Phm) (pdb code 3phm). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the Reduced (Cu+) Peptidylglycine Alpha-Hydroxylating Monooxygenase (Phm), PDB code: 3phm:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in 3phm

Go back to Copper Binding Sites List in 3phm
Copper binding site 1 out of 2 in the Reduced (Cu+) Peptidylglycine Alpha-Hydroxylating Monooxygenase (Phm)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Reduced (Cu+) Peptidylglycine Alpha-Hydroxylating Monooxygenase (Phm) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu357

b:55.5
occ:1.00
ND1 A:HIS108 2.0 47.6 1.0
ND1 A:HIS172 2.1 48.9 1.0
ND1 A:HIS107 2.2 58.7 1.0
CG A:HIS108 2.9 38.3 1.0
CE1 A:HIS107 3.0 57.8 1.0
CG A:HIS172 3.1 48.5 1.0
CG A:HIS107 3.1 54.9 1.0
CE1 A:HIS108 3.1 42.8 1.0
CE1 A:HIS172 3.1 45.6 1.0
CB A:HIS108 3.2 41.6 1.0
CB A:HIS172 3.4 45.3 1.0
CB A:HIS107 3.5 49.3 1.0
N A:HIS108 3.5 44.2 1.0
C A:HIS107 3.9 46.6 1.0
CA A:HIS108 3.9 41.7 1.0
NE2 A:HIS107 4.1 58.1 1.0
CD2 A:HIS108 4.1 42.7 1.0
CD2 A:HIS107 4.2 56.9 1.0
NE2 A:HIS108 4.2 45.9 1.0
CD2 A:HIS172 4.3 49.2 1.0
NE2 A:HIS172 4.3 45.2 1.0
CA A:HIS107 4.3 47.4 1.0
OH A:TYR79 4.4 61.9 1.0
O A:HOH618 4.4 42.4 1.0
O A:HIS107 4.4 46.0 1.0
O A:HOH438 4.7 56.1 1.0
C A:HIS108 4.7 40.0 1.0
CA A:HIS172 4.8 43.6 1.0
O A:HIS108 4.8 41.4 1.0
O A:HIS172 4.9 42.9 1.0
CZ A:TYR79 4.9 57.6 1.0

Copper binding site 2 out of 2 in 3phm

Go back to Copper Binding Sites List in 3phm
Copper binding site 2 out of 2 in the Reduced (Cu+) Peptidylglycine Alpha-Hydroxylating Monooxygenase (Phm)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Reduced (Cu+) Peptidylglycine Alpha-Hydroxylating Monooxygenase (Phm) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu358

b:41.9
occ:1.00
O A:HOH705 1.9 47.1 1.0
NE2 A:HIS242 2.1 26.8 1.0
NE2 A:HIS244 2.2 30.5 1.0
SD A:MET314 2.5 36.4 1.0
CE1 A:HIS242 3.0 20.9 1.0
CD2 A:HIS242 3.1 24.2 1.0
CD2 A:HIS244 3.1 25.5 1.0
CE1 A:HIS244 3.3 22.8 1.0
CE A:MET314 3.5 32.0 1.0
CG A:MET314 3.6 31.3 1.0
CB A:MET314 3.9 30.4 1.0
ND1 A:HIS242 4.2 25.3 1.0
CG A:HIS242 4.2 25.8 1.0
CG A:HIS244 4.3 28.3 1.0
ND1 A:HIS244 4.4 27.8 1.0
O A:GLY307 4.9 32.9 1.0
O A:GLY308 4.9 45.5 1.0

Reference:

S.T.Prigge, A.S.Kolhekar, B.A.Eipper, R.E.Mains, L.M.Amzel. Substrate-Mediated Electron Transfer in Peptidylglycine Alpha-Hydroxylating Monooxygenase. Nat.Struct.Biol. V. 6 976 1999.
ISSN: ISSN 1072-8368
PubMed: 10504734
DOI: 10.1038/13351
Page generated: Wed Jul 31 01:32:46 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy