Copper in PDB 3pau: Cueo in the Resting Oxidized State
Protein crystallography data
The structure of Cueo in the Resting Oxidized State, PDB code: 3pau
was solved by
S.A.Roberts,
S.Singh,
W.R.Montfort,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
28.60 /
2.00
|
Space group
|
C 2 2 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
69.216,
73.113,
183.784,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
21.5 /
26.6
|
Copper Binding Sites:
The binding sites of Copper atom in the Cueo in the Resting Oxidized State
(pdb code 3pau). This binding sites where shown within
5.0 Angstroms radius around Copper atom.
In total 4 binding sites of Copper where determined in the
Cueo in the Resting Oxidized State, PDB code: 3pau:
Jump to Copper binding site number:
1;
2;
3;
4;
Copper binding site 1 out
of 4 in 3pau
Go back to
Copper Binding Sites List in 3pau
Copper binding site 1 out
of 4 in the Cueo in the Resting Oxidized State
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 1 of Cueo in the Resting Oxidized State within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cu701
b:23.9
occ:1.00
|
CU2
|
A:C2O701
|
0.0
|
23.9
|
1.0
|
O1
|
A:C2O701
|
1.9
|
23.3
|
1.0
|
NE2
|
A:HIS448
|
2.1
|
16.4
|
1.0
|
NE2
|
A:HIS499
|
2.2
|
16.9
|
1.0
|
NE2
|
A:HIS143
|
2.4
|
18.2
|
1.0
|
CE1
|
A:HIS448
|
2.9
|
18.1
|
1.0
|
CE1
|
A:HIS499
|
3.0
|
17.0
|
1.0
|
CD2
|
A:HIS143
|
3.1
|
18.8
|
1.0
|
CD2
|
A:HIS448
|
3.1
|
16.3
|
1.0
|
CD2
|
A:HIS499
|
3.3
|
17.4
|
1.0
|
CU
|
A:CU801
|
3.5
|
49.8
|
1.0
|
CU3
|
A:C2O701
|
3.5
|
25.0
|
1.0
|
CE1
|
A:HIS143
|
3.5
|
19.4
|
1.0
|
CD2
|
A:HIS446
|
3.7
|
18.5
|
1.0
|
CD2
|
A:HIS101
|
3.8
|
21.3
|
1.0
|
NE2
|
A:HIS101
|
3.9
|
23.1
|
1.0
|
O
|
A:HOH692
|
3.9
|
7.6
|
0.5
|
ND1
|
A:HIS448
|
4.1
|
15.6
|
1.0
|
ND1
|
A:HIS499
|
4.2
|
16.3
|
1.0
|
CG
|
A:HIS448
|
4.2
|
16.8
|
1.0
|
NE2
|
A:HIS446
|
4.2
|
20.1
|
1.0
|
CE1
|
A:HIS141
|
4.3
|
17.2
|
1.0
|
CG
|
A:HIS143
|
4.3
|
19.8
|
1.0
|
CG
|
A:HIS499
|
4.3
|
17.1
|
1.0
|
NE2
|
A:HIS141
|
4.5
|
18.0
|
1.0
|
ND1
|
A:HIS143
|
4.5
|
20.3
|
1.0
|
CD2
|
A:HIS501
|
4.7
|
17.3
|
1.0
|
CG
|
A:HIS101
|
4.7
|
20.3
|
1.0
|
CE1
|
A:HIS101
|
4.8
|
22.5
|
1.0
|
ND1
|
A:HIS103
|
4.8
|
15.3
|
1.0
|
NE2
|
A:HIS501
|
4.9
|
18.2
|
1.0
|
CG
|
A:HIS446
|
4.9
|
17.5
|
1.0
|
OE1
|
A:GLU506
|
4.9
|
21.5
|
1.0
|
|
Copper binding site 2 out
of 4 in 3pau
Go back to
Copper Binding Sites List in 3pau
Copper binding site 2 out
of 4 in the Cueo in the Resting Oxidized State
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 2 of Cueo in the Resting Oxidized State within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cu701
b:25.0
occ:1.00
|
CU3
|
A:C2O701
|
0.0
|
25.0
|
1.0
|
O1
|
A:C2O701
|
1.9
|
23.3
|
1.0
|
ND1
|
A:HIS103
|
1.9
|
15.3
|
1.0
|
NE2
|
A:HIS141
|
2.2
|
18.0
|
1.0
|
NE2
|
A:HIS501
|
2.4
|
18.2
|
1.0
|
CE1
|
A:HIS103
|
2.8
|
13.5
|
1.0
|
CD2
|
A:HIS501
|
3.0
|
17.3
|
1.0
|
CE1
|
A:HIS141
|
3.0
|
17.2
|
1.0
|
CG
|
A:HIS103
|
3.0
|
14.7
|
1.0
|
CD2
|
A:HIS141
|
3.3
|
15.0
|
1.0
|
CU2
|
A:C2O701
|
3.5
|
23.9
|
1.0
|
CB
|
A:HIS103
|
3.5
|
15.8
|
1.0
|
CE1
|
A:HIS501
|
3.6
|
20.1
|
1.0
|
CU
|
A:CU801
|
3.7
|
49.8
|
1.0
|
CD2
|
A:HIS446
|
3.9
|
18.5
|
1.0
|
NE2
|
A:HIS103
|
4.0
|
13.7
|
1.0
|
CD2
|
A:HIS101
|
4.1
|
21.3
|
1.0
|
O
|
A:HOH692
|
4.1
|
7.6
|
0.5
|
NE2
|
A:HIS446
|
4.1
|
20.1
|
1.0
|
CD2
|
A:HIS103
|
4.1
|
14.8
|
1.0
|
ND1
|
A:HIS141
|
4.2
|
17.0
|
1.0
|
CG
|
A:HIS501
|
4.3
|
16.5
|
1.0
|
NE2
|
A:HIS101
|
4.3
|
23.1
|
1.0
|
CG
|
A:HIS141
|
4.4
|
16.1
|
1.0
|
CZ2
|
A:TRP139
|
4.4
|
16.2
|
1.0
|
ND1
|
A:HIS501
|
4.5
|
20.8
|
1.0
|
CE1
|
A:HIS499
|
4.7
|
17.0
|
1.0
|
CA
|
A:HIS103
|
4.7
|
15.0
|
1.0
|
NE2
|
A:HIS499
|
4.8
|
16.9
|
1.0
|
CE2
|
A:TRP139
|
4.8
|
16.4
|
1.0
|
CG
|
A:HIS446
|
4.9
|
17.5
|
1.0
|
CH2
|
A:TRP139
|
4.9
|
17.4
|
1.0
|
|
Copper binding site 3 out
of 4 in 3pau
Go back to
Copper Binding Sites List in 3pau
Copper binding site 3 out
of 4 in the Cueo in the Resting Oxidized State
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 3 of Cueo in the Resting Oxidized State within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cu801
b:49.8
occ:1.00
|
NE2
|
A:HIS101
|
2.1
|
23.1
|
1.0
|
NE2
|
A:HIS446
|
2.3
|
20.1
|
1.0
|
O
|
A:HOH691
|
2.7
|
2.0
|
0.5
|
CE1
|
A:HIS101
|
3.0
|
22.5
|
1.0
|
CD2
|
A:HIS446
|
3.0
|
18.5
|
1.0
|
CD2
|
A:HIS448
|
3.1
|
16.3
|
1.0
|
CD2
|
A:HIS101
|
3.2
|
21.3
|
1.0
|
NE2
|
A:HIS448
|
3.3
|
16.4
|
1.0
|
CE1
|
A:HIS446
|
3.3
|
20.1
|
1.0
|
CU2
|
A:C2O701
|
3.5
|
23.9
|
1.0
|
CG
|
A:HIS103
|
3.5
|
14.7
|
1.0
|
CA
|
A:HIS103
|
3.5
|
15.0
|
1.0
|
ND1
|
A:HIS103
|
3.6
|
15.3
|
1.0
|
CG
|
A:HIS448
|
3.7
|
16.8
|
1.0
|
CB
|
A:HIS103
|
3.7
|
15.8
|
1.0
|
CU3
|
A:C2O701
|
3.7
|
25.0
|
1.0
|
CE1
|
A:HIS448
|
3.9
|
18.1
|
1.0
|
O1
|
A:C2O701
|
3.9
|
23.3
|
1.0
|
CD2
|
A:HIS103
|
4.0
|
14.8
|
1.0
|
ND1
|
A:HIS448
|
4.1
|
15.6
|
1.0
|
CE1
|
A:HIS103
|
4.1
|
13.5
|
1.0
|
ND1
|
A:HIS101
|
4.1
|
22.3
|
1.0
|
N
|
A:GLY104
|
4.2
|
15.1
|
1.0
|
CG
|
A:HIS101
|
4.2
|
20.3
|
1.0
|
CG
|
A:HIS446
|
4.3
|
17.5
|
1.0
|
ND1
|
A:HIS446
|
4.4
|
20.6
|
1.0
|
C
|
A:HIS103
|
4.4
|
15.0
|
1.0
|
NE2
|
A:HIS103
|
4.4
|
13.7
|
1.0
|
CA
|
A:HIS448
|
4.4
|
17.0
|
1.0
|
O
|
A:HOH641
|
4.4
|
10.3
|
0.5
|
N
|
A:HIS103
|
4.5
|
15.5
|
1.0
|
CB
|
A:HIS448
|
4.5
|
17.2
|
1.0
|
O
|
A:HOH537
|
4.7
|
21.4
|
1.0
|
O
|
A:TRP102
|
4.8
|
14.8
|
1.0
|
N
|
A:HIS448
|
4.9
|
16.7
|
1.0
|
C
|
A:TRP102
|
5.0
|
16.0
|
1.0
|
NE2
|
A:HIS499
|
5.0
|
16.9
|
1.0
|
|
Copper binding site 4 out
of 4 in 3pau
Go back to
Copper Binding Sites List in 3pau
Copper binding site 4 out
of 4 in the Cueo in the Resting Oxidized State
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 4 of Cueo in the Resting Oxidized State within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cu802
b:19.0
occ:1.00
|
ND1
|
A:HIS443
|
1.9
|
17.2
|
1.0
|
ND1
|
A:HIS505
|
2.0
|
14.8
|
1.0
|
SG
|
A:CYS500
|
2.2
|
18.2
|
1.0
|
CE1
|
A:HIS443
|
2.8
|
17.2
|
1.0
|
CE1
|
A:HIS505
|
3.0
|
17.4
|
1.0
|
CG
|
A:HIS443
|
3.0
|
17.8
|
1.0
|
CG
|
A:HIS505
|
3.0
|
18.0
|
1.0
|
CB
|
A:CYS500
|
3.1
|
17.5
|
1.0
|
SD
|
A:MET510
|
3.3
|
19.6
|
1.0
|
CB
|
A:HIS505
|
3.4
|
20.0
|
1.0
|
CB
|
A:HIS443
|
3.5
|
18.9
|
1.0
|
O
|
A:LEU442
|
3.5
|
21.1
|
1.0
|
CA
|
A:HIS443
|
3.7
|
19.0
|
1.0
|
CB
|
A:LEU502
|
4.0
|
14.7
|
1.0
|
NE2
|
A:HIS443
|
4.0
|
17.7
|
1.0
|
CD2
|
A:HIS443
|
4.1
|
17.2
|
1.0
|
NE2
|
A:HIS505
|
4.1
|
17.4
|
1.0
|
CE
|
A:MET510
|
4.1
|
22.6
|
1.0
|
CD2
|
A:HIS505
|
4.2
|
18.2
|
1.0
|
C
|
A:LEU442
|
4.4
|
21.6
|
1.0
|
N
|
A:HIS443
|
4.5
|
20.3
|
1.0
|
CA
|
A:CYS500
|
4.6
|
17.3
|
1.0
|
CG
|
A:MET510
|
4.7
|
19.5
|
1.0
|
CD1
|
A:LEU502
|
4.7
|
11.8
|
1.0
|
O
|
A:LEU502
|
4.8
|
15.0
|
1.0
|
CG
|
A:LEU502
|
4.8
|
13.3
|
1.0
|
C
|
A:HIS443
|
4.8
|
18.4
|
1.0
|
CA
|
A:HIS505
|
4.9
|
20.0
|
1.0
|
N
|
A:LEU502
|
5.0
|
15.1
|
1.0
|
CA
|
A:LEU502
|
5.0
|
14.8
|
1.0
|
|
Reference:
S.A.Roberts,
S.Singh,
W.R.Montfort.
Cueo in the Resting Oxidized State To Be Published.
Page generated: Wed Jul 31 01:31:36 2024
|