Atomistry » Copper » PDB 3mnd-3qjo » 3nq1
Atomistry »
  Copper »
    PDB 3mnd-3qjo »
      3nq1 »

Copper in PDB 3nq1: Crystal Structure of Tyrosinase From Bacillus Megaterium in Complex with Inhibitor Kojic Acid

Enzymatic activity of Crystal Structure of Tyrosinase From Bacillus Megaterium in Complex with Inhibitor Kojic Acid

All present enzymatic activity of Crystal Structure of Tyrosinase From Bacillus Megaterium in Complex with Inhibitor Kojic Acid:
1.14.18.1;

Protein crystallography data

The structure of Crystal Structure of Tyrosinase From Bacillus Megaterium in Complex with Inhibitor Kojic Acid, PDB code: 3nq1 was solved by M.Sendovski, M.Kanteev, N.Adir, A.Fishman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.09 / 2.30
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 51.380, 83.530, 146.160, 90.00, 90.00, 90.00
R / Rfree (%) 26 / 29.4

Other elements in 3nq1:

The structure of Crystal Structure of Tyrosinase From Bacillus Megaterium in Complex with Inhibitor Kojic Acid also contains other interesting chemical elements:

Zinc (Zn) 13 atoms

Copper Binding Sites:

The binding sites of Copper atom in the Crystal Structure of Tyrosinase From Bacillus Megaterium in Complex with Inhibitor Kojic Acid (pdb code 3nq1). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 4 binding sites of Copper where determined in the Crystal Structure of Tyrosinase From Bacillus Megaterium in Complex with Inhibitor Kojic Acid, PDB code: 3nq1:
Jump to Copper binding site number: 1; 2; 3; 4;

Copper binding site 1 out of 4 in 3nq1

Go back to Copper Binding Sites List in 3nq1
Copper binding site 1 out of 4 in the Crystal Structure of Tyrosinase From Bacillus Megaterium in Complex with Inhibitor Kojic Acid


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of Tyrosinase From Bacillus Megaterium in Complex with Inhibitor Kojic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu501

b:22.1
occ:1.00
 O A:HOH354 2.0 20.9 1.0
NE2 A:HIS42 2.2 11.4 1.0
CE1 A:HIS60 2.4 20.4 1.0
O A:HOH353 2.5 10.7 1.0
CE1 A:HIS42 2.9 11.3 1.0
ND1 A:HIS60 3.3 27.4 1.0
NE2 A:HIS60 3.4 17.9 1.0
CD2 A:HIS42 3.4 10.9 1.0
CU A:CU502 3.5 14.0 1.0
CE2 A:PHE227 4.1 14.7 1.0
NE2 A:HIS69 4.1 14.1 1.0
ND1 A:HIS42 4.1 12.4 1.0
CG A:HIS42 4.4 13.6 1.0
CG A:HIS60 4.4 19.7 1.0
CD2 A:HIS60 4.5 21.4 1.0
CG2 A:VAL218 4.5 13.8 1.0
NE2 A:HIS208 4.5 14.1 1.0
CE1 A:HIS208 4.5 12.1 1.0
CZ A:PHE227 4.5 9.9 1.0
CG1 A:VAL218 4.6 17.4 1.0
CA A:VAL218 4.6 17.7 1.0
CE1 A:HIS69 4.7 13.6 1.0
O A:VAL218 4.7 14.7 1.0
CB A:VAL218 4.8 18.2 1.0
CB A:ALA221 4.8 17.4 1.0
NE2 A:HIS231 4.9 11.8 1.0
NE2 A:HIS204 5.0 13.0 1.0

Copper binding site 2 out of 4 in 3nq1

Go back to Copper Binding Sites List in 3nq1
Copper binding site 2 out of 4 in the Crystal Structure of Tyrosinase From Bacillus Megaterium in Complex with Inhibitor Kojic Acid


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Crystal Structure of Tyrosinase From Bacillus Megaterium in Complex with Inhibitor Kojic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu502

b:14.0
occ:1.00
 O A:HOH354 1.7 20.9 1.0
NE2 A:HIS231 2.0 11.8 1.0
NE2 A:HIS208 2.0 14.1 1.0
NE2 A:HIS204 2.1 13.0 1.0
CE1 A:HIS231 2.8 12.7 1.0
CE1 A:HIS208 2.8 12.1 1.0
CE1 A:HIS204 3.0 11.8 1.0
CD2 A:HIS208 3.1 14.9 1.0
CD2 A:HIS231 3.1 9.9 1.0
CD2 A:HIS204 3.1 14.6 1.0
O A:HOH353 3.4 10.7 1.0
CU A:CU501 3.5 22.1 1.0
CE2 A:PHE227 3.9 14.7 1.0
ND1 A:HIS231 4.0 14.0 1.0
ND1 A:HIS208 4.0 15.1 1.0
CG A:HIS208 4.1 14.4 1.0
ND1 A:HIS204 4.1 11.8 1.0
CG A:HIS231 4.2 12.3 1.0
NE2 A:HIS69 4.2 14.1 1.0
CG A:HIS204 4.2 15.2 1.0
CZ A:PHE227 4.3 9.9 1.0
CE1 A:PHE65 4.6 14.8 1.0
ND1 A:HIS230 4.6 18.0 1.0
CD2 A:HIS69 4.6 12.6 1.0
CE1 A:HIS230 4.6 17.5 1.0
CD2 A:PHE227 4.7 12.2 1.0
CE1 A:HIS69 4.8 13.6 1.0
CZ A:PHE65 5.0 12.2 1.0
CE1 A:HIS60 5.0 20.4 1.0

Copper binding site 3 out of 4 in 3nq1

Go back to Copper Binding Sites List in 3nq1
Copper binding site 3 out of 4 in the Crystal Structure of Tyrosinase From Bacillus Megaterium in Complex with Inhibitor Kojic Acid


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Crystal Structure of Tyrosinase From Bacillus Megaterium in Complex with Inhibitor Kojic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu501

b:14.3
occ:1.00
 O B:HOH407 1.7 30.0 1.0
NE2 B:HIS42 2.1 10.4 1.0
NE2 B:HIS60 2.1 8.6 1.0
CE1 B:HIS42 2.9 15.3 1.0
CD2 B:HIS60 3.0 12.9 1.0
CE1 B:HIS60 3.2 13.4 1.0
CD2 B:HIS42 3.2 8.9 1.0
CU B:CU502 3.5 17.0 1.0
O B:HOH361 3.6 17.2 1.0
NE2 B:HIS69 3.8 15.1 1.0
CE2 B:PHE227 4.0 10.0 1.0
ND1 B:HIS42 4.1 11.7 1.0
CG B:HIS60 4.2 14.6 1.0
ND1 B:HIS60 4.2 12.6 1.0
CG B:HIS42 4.3 10.0 1.0
CZ B:PHE227 4.4 12.4 1.0
CE1 B:HIS69 4.4 12.7 1.0
NE2 B:HIS208 4.6 13.2 1.0
CE1 B:HIS208 4.7 11.4 1.0
CG2 B:VAL218 4.7 18.6 1.0
CG1 B:VAL218 4.7 19.0 1.0
NE2 B:HIS231 4.8 12.6 1.0
CA B:VAL218 4.9 16.2 1.0
O B:VAL218 4.9 16.9 1.0
CD2 B:HIS69 4.9 10.9 1.0
NE2 B:HIS204 5.0 13.6 1.0

Copper binding site 4 out of 4 in 3nq1

Go back to Copper Binding Sites List in 3nq1
Copper binding site 4 out of 4 in the Crystal Structure of Tyrosinase From Bacillus Megaterium in Complex with Inhibitor Kojic Acid


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Crystal Structure of Tyrosinase From Bacillus Megaterium in Complex with Inhibitor Kojic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu502

b:17.0
occ:1.00
 NE2 B:HIS231 1.9 12.6 1.0
O B:HOH407 1.9 30.0 1.0
NE2 B:HIS208 2.1 13.2 1.0
NE2 B:HIS204 2.1 13.6 1.0
CE1 B:HIS231 2.7 11.3 1.0
CE1 B:HIS208 2.9 11.4 1.0
CD2 B:HIS231 3.0 9.1 1.0
CE1 B:HIS204 3.1 13.0 1.0
CD2 B:HIS204 3.1 15.3 1.0
CD2 B:HIS208 3.2 15.5 1.0
CU B:CU501 3.5 14.3 1.0
CE2 B:PHE227 3.8 10.0 1.0
O B:HOH361 3.8 17.2 1.0
ND1 B:HIS231 3.9 12.3 1.0
ND1 B:HIS208 4.0 7.5 1.0
CG B:HIS231 4.0 8.4 1.0
NE2 B:HIS69 4.1 15.1 1.0
ND1 B:HIS204 4.2 14.6 1.0
CZ B:PHE227 4.2 12.4 1.0
CG B:HIS208 4.2 14.2 1.0
CG B:HIS204 4.3 17.8 1.0
CD2 B:HIS69 4.6 10.9 1.0
CE1 B:PHE65 4.6 14.6 1.0
CD2 B:PHE227 4.6 12.8 1.0
ND1 B:HIS230 4.6 16.4 1.0
CE1 B:HIS230 4.7 16.2 1.0
CE1 B:HIS69 4.7 12.7 1.0
CZ B:PHE65 4.9 10.1 1.0

Reference:

M.Sendovski, M.Kanteev, V.Shuster Ben-Yosef, N.Adir, A.Fishman. First Structures of An Active Bacterial Tyrosinase Reveal Copper Plasticity. J.Mol.Biol. V. 405 227 2011.
ISSN: ISSN 0022-2836
PubMed: 21040728
DOI: 10.1016/J.JMB.2010.10.048
Page generated: Wed Jul 31 01:24:56 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy