Chemical elements
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    Cuprous Compounds
    Complex Copper Compounds
    Cupric Compounds
    PDB 1a2v-1bxu
    PDB 1bxv-1fwx
    PDB 1g3d-1j9t
    PDB 1jcv-1mfm
    PDB 1mg2-1paz
    PDB 1pcs-1sii
    PDB 1sjm-1w6w
    PDB 1w77-2afn
    PDB 2ahk-2dv6
    PDB 2dws-2ggp
    PDB 2ghz-2mta
    PDB 2nrd-2vm3
    PDB 2vm4-2yah
    PDB 2yam-3bkt
    PDB 3bqv-3fyi
    PDB 3g5w-3mie
    PDB 3mif-3t6v
      3mif
      3mig
      3mih
      3mk7
      3mlj
      3mlk
      3mll
      3mn0
      3mph
      3mzt
      3n9h
      3nbb
      3nbj
      3nm8
      3np3
      3np4
      3npy
      3nq0
      3nq1
      3nq5
      3ntm
      3nxz
      3om3
      3oma
      3omi
      3omn
      3oqr
      3ow7
      3paz
      3phm
      3ply
      3pxl
      3qqx
      3re7
      3s0p
      3s33
      3s38
      3s39
      3s3a
      3s3b
      3s3c
      3s3d
      3sod
      3sqr
      3t0u
      3t51
      3t53
      3t56
      3t5w
      3t6v
    PDB 3t6w-9pcy

Copper in the structure of Crystal Structure of Tyrosinase From Bacillus Megaterium in Complex With Inhibitor Kojic Acid (pdb 3nq1)






The binding sites of Copper atom in the structure of Crystal Structure of Tyrosinase From Bacillus Megaterium in Complex With Inhibitor Kojic Acid (pdb code 3nq1). This binding sites where shown with 5.0 Angstroms radius around Copper atom.
The 3nq1 structure was solved by M.SENDOVSKI, M.KANTEEV, N.ADIR, A.FISHMAN, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)42.1-2.3
Space groupP212121
a (A)51.380
b (A)83.530
c (A)146.160
alpha (°)90.00
beta (°)90.00
gamma (°)90.00
Rfactor (%)26
Rfree (%)29.4


Copper Binding Sites:

Copper binding site 1 out of 4 in 3nq1


Copper binding site 1 out of 4 in 3nq1
Click to enlarge
stereopicture of Copper binding site 1 out of 4 in 3nq1
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Copper in the PDB 3nq1. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Copper atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: His42, A: His60, A: His69, A: His204, A: His208, A: Val218, A: Ala221, A: Phe227, A: His231, A: Cu502, A: Hoh353, A: Hoh354,

conact list:


AtomAtomDistance (A)
CuNE2 A:His422.19
CuND1 A:His424.11
CuCD2 A:His423.39
CuCE1 A:His422.88
CuCG A:His424.38
CuNE2 A:His603.38
CuND1 A:His603.27
CuCD2 A:His604.47
CuCE1 A:His602.43
CuCG A:His604.43
CuNE2 A:His694.11
CuCE1 A:His694.71
CuNE2 A:His2045.00
CuNE2 A:His2084.50
CuCE1 A:His2084.52
CuO A:Val2184.72
CuCB A:Val2184.82
CuCG2 A:Val2184.48
CuCG1 A:Val2184.59
CuCA A:Val2184.62
CuCB A:Ala2214.83
CuCE2 A:Phe2274.06
CuCZ A:Phe2274.52
CuNE2 A:His2314.90
CuCU A:Cu5023.54
CuO A:Hoh3532.49
CuO A:Hoh3541.96

interactive model:


Copper binding site 2 out of 4 in 3nq1


Copper binding site 2 out of 4 in 3nq1
Click to enlarge
stereopicture of Copper binding site 2 out of 4 in 3nq1
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Copper in the PDB 3nq1. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Copper atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: His60, A: Phe65, A: His69, A: His204, A: His208, A: Phe227, A: His230, A: His231, A: Cu501, A: Hoh353, A: Hoh354,

conact list:


AtomAtomDistance (A)
CuCE1 A:His604.98
CuCZ A:Phe654.97
CuCE1 A:Phe654.60
CuNE2 A:His694.16
CuCD2 A:His694.65
CuCE1 A:His694.80
CuNE2 A:His2042.10
CuND1 A:His2044.14
CuCD2 A:His2043.13
CuCE1 A:His2043.01
CuCG A:His2044.23
CuNE2 A:His2082.00
CuND1 A:His2083.97
CuCD2 A:His2083.10
CuCE1 A:His2082.82
CuCG A:His2084.14
CuCE2 A:Phe2273.86
CuCD2 A:Phe2274.66
CuCZ A:Phe2274.27
CuND1 A:His2304.64
CuCE1 A:His2304.65
CuNE2 A:His2311.97
CuND1 A:His2313.96
CuCD2 A:His2313.13
CuCE1 A:His2312.77
CuCG A:His2314.16
CuCU A:Cu5013.54
CuO A:Hoh3533.42
CuO A:Hoh3541.68

interactive model:


Copper binding site 3 out of 4 in 3nq1


Copper binding site 3 out of 4 in 3nq1
Click to enlarge
stereopicture of Copper binding site 3 out of 4 in 3nq1
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Copper in the PDB 3nq1. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Copper atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: His42, B: His60, B: His69, B: His204, B: His208, B: Val218, B: Phe227, B: His231, B: Cu502, B: Hoh361, B: Hoh407,

conact list:


AtomAtomDistance (A)
CuNE2 B:His422.10
CuND1 B:His424.11
CuCD2 B:His423.22
CuCE1 B:His422.93
CuCG B:His424.28
CuNE2 B:His602.11
CuND1 B:His604.23
CuCD2 B:His603.01
CuCE1 B:His603.15
CuCG B:His604.19
CuNE2 B:His693.80
CuCD2 B:His694.94
CuCE1 B:His694.40
CuNE2 B:His2044.97
CuNE2 B:His2084.60
CuCE1 B:His2084.67
CuO B:Val2184.91
CuCG2 B:Val2184.71
CuCG1 B:Val2184.74
CuCA B:Val2184.89
CuCE2 B:Phe2274.03
CuCZ B:Phe2274.39
CuNE2 B:His2314.77
CuCU B:Cu5023.53
CuO B:Hoh3613.58
CuO B:Hoh4071.67

interactive model:


Copper binding site 4 out of 4 in 3nq1


Copper binding site 4 out of 4 in 3nq1
Click to enlarge
stereopicture of Copper binding site 4 out of 4 in 3nq1
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 4 of Copper in the PDB 3nq1. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Copper atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Phe65, B: His69, B: His204, B: His208, B: Phe227, B: His230, B: His231, B: Cu501, B: Hoh361, B: Hoh407,

conact list:


AtomAtomDistance (A)
CuCZ B:Phe654.94
CuCE1 B:Phe654.58
CuNE2 B:His694.09
CuCD2 B:His694.55
CuCE1 B:His694.75
CuNE2 B:His2042.13
CuND1 B:His2044.20
CuCD2 B:His2043.14
CuCE1 B:His2043.07
CuCG B:His2044.26
CuNE2 B:His2082.07
CuND1 B:His2084.04
CuCD2 B:His2083.19
CuCE1 B:His2082.87
CuCG B:His2084.22
CuCE2 B:Phe2273.82
CuCD2 B:Phe2274.62
CuCZ B:Phe2274.20
CuND1 B:His2304.62
CuCE1 B:His2304.65
CuNE2 B:His2311.86
CuND1 B:His2313.85
CuCD2 B:His2313.02
CuCE1 B:His2312.66
CuCG B:His2314.05
CuCU B:Cu5013.53
CuO B:Hoh3613.82
CuO B:Hoh4071.95

interactive model:




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