Copper in PDB 3mnd: Crystallographic Analysis of the Cystosolic Cu/Zn Superoxide Dismutase From Taenia Solium

All present enzymatic activity of Crystallographic Analysis of the Cystosolic Cu/Zn Superoxide Dismutase From Taenia Solium:
1.15.1.1;

The structure of Crystallographic Analysis of the Cystosolic Cu/Zn Superoxide Dismutase From Taenia Solium, PDB code: 3mnd was solved by A.Hernandez-Santoyo, A.Rodriguez-Romero, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.64 / 2.20
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	42.171, 53.798, 117.264, 90.00, 90.00, 90.00
R / Rfree (%)	19.2 / 24.9

The structure of Crystallographic Analysis of the Cystosolic Cu/Zn Superoxide Dismutase From Taenia Solium also contains other interesting chemical elements:

Zinc

(Zn)

5 atoms

The binding sites of Copper atom in the Crystallographic Analysis of the Cystosolic Cu/Zn Superoxide Dismutase From Taenia Solium (pdb code 3mnd). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the Crystallographic Analysis of the Cystosolic Cu/Zn Superoxide Dismutase From Taenia Solium, PDB code: 3mnd:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in the Crystallographic Analysis of the Cystosolic Cu/Zn Superoxide Dismutase From Taenia Solium


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystallographic Analysis of the Cystosolic Cu/Zn Superoxide Dismutase From Taenia Solium within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu155 b:24.1 occ:1.00 ND1 A:HIS43 2.2 13.3 1.0 NE2 A:HIS60 2.2 17.2 1.0 NE2 A:HIS117 2.3 16.9 1.0 NE2 A:HIS45 2.3 15.5 1.0 O A:HOH164 2.5 17.8 1.0 CD2 A:HIS60 3.0 18.4 1.0 CE1 A:HIS43 3.1 13.0 1.0 CE1 A:HIS45 3.1 15.1 1.0 CG A:HIS43 3.1 15.1 1.0 CD2 A:HIS117 3.1 12.3 1.0 CE1 A:HIS60 3.2 14.7 1.0 CE1 A:HIS117 3.2 18.7 1.0 CD2 A:HIS45 3.4 16.3 1.0 CB A:HIS43 3.4 9.1 1.0 NE2 A:HIS43 4.1 18.4 1.0 CD2 A:HIS43 4.1 15.1 1.0 CG A:HIS60 4.1 18.4 1.0 ND1 A:HIS60 4.2 14.8 1.0 ND1 A:HIS45 4.3 17.7 1.0 CG A:HIS117 4.3 15.7 1.0 ND1 A:HIS117 4.3 19.2 1.0 CG A:HIS45 4.4 20.1 1.0 O A:HOH200 4.7 20.9 1.0 CA A:HIS43 4.7 13.9 1.0 O A:HOH195 4.7 18.5 1.0 N A:HIS43 4.8 11.4 1.0 CB A:VAL115 4.9 12.8 1.0 O A:THR134 5.0 20.4 1.0 CG1 A:VAL115 5.0 15.3 1.0

Copper binding site 2 out of 2 in the Crystallographic Analysis of the Cystosolic Cu/Zn Superoxide Dismutase From Taenia Solium


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Crystallographic Analysis of the Cystosolic Cu/Zn Superoxide Dismutase From Taenia Solium within 5.0Å range: probe atom residue distance (Å) B Occ B:Cu156 b:31.8 occ:1.00 ND1 B:HIS43 2.2 20.5 1.0 NE2 B:HIS117 2.2 15.8 1.0 NE2 B:HIS45 2.2 21.2 1.0 NE2 B:HIS60 2.5 17.1 1.0 CE1 B:HIS45 2.7 19.4 1.0 O B:HOH168 2.9 24.5 1.0 CD2 B:HIS117 2.9 16.0 1.0 CG B:HIS43 3.0 17.4 1.0 CE1 B:HIS43 3.1 17.2 1.0 CD2 B:HIS60 3.1 16.7 1.0 CB B:HIS43 3.3 17.1 1.0 CE1 B:HIS117 3.3 17.8 1.0 CD2 B:HIS45 3.4 18.4 1.0 CE1 B:HIS60 3.5 17.5 1.0 O B:HOH191 3.5 20.6 1.0 ND1 B:HIS45 3.9 21.4 1.0 CD2 B:HIS43 4.0 18.4 1.0 NE2 B:HIS43 4.1 15.4 1.0 CG B:HIS117 4.2 20.3 1.0 CG B:HIS45 4.3 17.1 1.0 CG B:HIS60 4.3 15.8 1.0 ND1 B:HIS117 4.3 18.4 1.0 ND1 B:HIS60 4.4 13.6 1.0 CA B:HIS43 4.5 17.0 1.0 O B:VAL115 4.6 14.4 1.0 N B:HIS43 4.7 14.7 1.0 O B:HOH189 4.7 21.0 1.0 CB B:VAL115 4.7 21.9 1.0 CG1 B:VAL115 4.7 15.1 1.0 O B:HOH190 4.8 17.7 1.0

A.Hernandez-Santoyo, A.Landa, E.Gonzalez-Mondragon, M.Pedraza-Escalona, R.Parra-Unda, A.Rodriguez-Romero. Crystal Structure of Cu / Zn Superoxide Dismutase From Taenia Solium Reveals Metal-Mediated Self-Assembly Febs J. V. 278 3308 2011.
ISSN: ISSN 1742-464X
PubMed: 21767346
DOI: 10.1111/J.1742-4658.2011.08247.X