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Copper in PDB 3m3a: The Roles of Glutamates and Metal Ions in A Rationally Designed Nitric Oxide Reductase Based on Myoglobin: Cu(II)-I107E Febmb (Cu(II) Binding to Feb Site)

Protein crystallography data

The structure of The Roles of Glutamates and Metal Ions in A Rationally Designed Nitric Oxide Reductase Based on Myoglobin: Cu(II)-I107E Febmb (Cu(II) Binding to Feb Site), PDB code: 3m3a was solved by Y.-W.Lin, N.Yeung, Y.-G.Gao, K.D.Miner, S.Tian, H.Robinson, Y.Lu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 1.37
Space group P 41
Cell size a, b, c (Å), α, β, γ (°) 60.580, 60.580, 38.220, 90.00, 90.00, 90.00
R / Rfree (%) n/a / 24.7

Other elements in 3m3a:

The structure of The Roles of Glutamates and Metal Ions in A Rationally Designed Nitric Oxide Reductase Based on Myoglobin: Cu(II)-I107E Febmb (Cu(II) Binding to Feb Site) also contains other interesting chemical elements:

Iron (Fe) 1 atom

Copper Binding Sites:

The binding sites of Copper atom in the The Roles of Glutamates and Metal Ions in A Rationally Designed Nitric Oxide Reductase Based on Myoglobin: Cu(II)-I107E Febmb (Cu(II) Binding to Feb Site) (pdb code 3m3a). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total only one binding site of Copper was determined in the The Roles of Glutamates and Metal Ions in A Rationally Designed Nitric Oxide Reductase Based on Myoglobin: Cu(II)-I107E Febmb (Cu(II) Binding to Feb Site), PDB code: 3m3a:

Copper binding site 1 out of 1 in 3m3a

Go back to Copper Binding Sites List in 3m3a
Copper binding site 1 out of 1 in the The Roles of Glutamates and Metal Ions in A Rationally Designed Nitric Oxide Reductase Based on Myoglobin: Cu(II)-I107E Febmb (Cu(II) Binding to Feb Site)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of The Roles of Glutamates and Metal Ions in A Rationally Designed Nitric Oxide Reductase Based on Myoglobin: Cu(II)-I107E Febmb (Cu(II) Binding to Feb Site) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu156

b:16.1
occ:1.00
O A:HOH1039 2.0 22.4 1.0
NE2 A:HIS64 2.0 17.1 1.0
NE2 A:HIS29 2.1 16.1 1.0
NE2 A:HIS43 2.1 18.8 1.0
OE2 A:GLU68 2.2 21.6 1.0
CD A:GLU68 2.9 18.6 1.0
OE1 A:GLU68 2.9 16.1 1.0
CD2 A:HIS64 3.0 16.2 1.0
CE1 A:HIS29 3.0 20.7 1.0
CD2 A:HIS43 3.1 16.2 1.0
CE1 A:HIS64 3.1 16.1 1.0
CE1 A:HIS43 3.1 16.8 1.0
CD2 A:HIS29 3.2 16.3 1.0
CG A:HIS64 4.1 16.4 1.0
ND1 A:HIS29 4.1 20.6 1.0
ND1 A:HIS64 4.2 17.4 1.0
CG A:GLU68 4.2 19.8 1.0
CG A:HIS43 4.2 14.4 1.0
ND1 A:HIS43 4.2 14.1 1.0
C4C A:HEM155 4.3 13.2 1.0
CG A:HIS29 4.3 13.9 1.0
CHD A:HEM155 4.3 15.8 1.0
C1D A:HEM155 4.5 15.3 1.0
NC A:HEM155 4.5 18.0 1.0
ND A:HEM155 4.5 15.3 1.0
C3C A:HEM155 4.8 18.0 1.0
FE A:HEM155 4.8 15.2 1.0
CB A:GLU68 5.0 17.4 1.0
C1C A:HEM155 5.0 16.1 1.0
OE2 A:GLU107 5.0 54.8 1.0

Reference:

Y.W.Lin, N.Yeung, Y.G.Gao, K.D.Miner, S.Tian, H.Robinson, Y.Lu. Roles of Glutamates and Metal Ions in A Rationally Designed Nitric Oxide Reductase Based on Myoglobin. Proc.Natl.Acad.Sci.Usa V. 107 8581 2010.
ISSN: ISSN 0027-8424
PubMed: 20421510
DOI: 10.1073/PNAS.1000526107
Page generated: Sun Dec 13 11:10:35 2020

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