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Copper in PDB 3lzl: Crystal Structure Analysis of the As-Solated P19 Protein From Campylobacter Jejuni at 1.45 A at pH 9.0

Protein crystallography data

The structure of Crystal Structure Analysis of the As-Solated P19 Protein From Campylobacter Jejuni at 1.45 A at pH 9.0, PDB code: 3lzl was solved by T.I.Doukov, A.C.K.Chan, M.Scofield, A.B.Ramin, S.A.L.Tom-Yew, M.E.P.Murphy, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 18.77 / 1.45
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 54.533, 73.545, 75.060, 90.00, 90.00, 90.00
R / Rfree (%) 14.1 / 18.7

Copper Binding Sites:

The binding sites of Copper atom in the Crystal Structure Analysis of the As-Solated P19 Protein From Campylobacter Jejuni at 1.45 A at pH 9.0 (pdb code 3lzl). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the Crystal Structure Analysis of the As-Solated P19 Protein From Campylobacter Jejuni at 1.45 A at pH 9.0, PDB code: 3lzl:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in 3lzl

Go back to Copper Binding Sites List in 3lzl
Copper binding site 1 out of 2 in the Crystal Structure Analysis of the As-Solated P19 Protein From Campylobacter Jejuni at 1.45 A at pH 9.0


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure Analysis of the As-Solated P19 Protein From Campylobacter Jejuni at 1.45 A at pH 9.0 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu200

b:21.6
occ:1.00
NE2 A:HIS42 2.0 17.2 1.0
NE2 A:HIS95 2.1 16.7 1.0
NE2 B:HIS132 2.1 18.8 1.0
SD A:MET88 2.3 19.2 1.0
CE1 A:HIS95 2.9 19.2 1.0
CE1 A:HIS42 2.9 20.1 1.0
CE1 B:HIS132 3.0 18.5 1.0
CD2 A:HIS42 3.1 16.5 1.0
CG A:MET88 3.2 19.1 1.0
CD2 A:HIS95 3.2 18.6 1.0
CD2 B:HIS132 3.2 21.0 1.0
CE A:MET88 3.4 20.9 1.0
OE2 A:GLU44 4.0 22.7 1.0
ND1 A:HIS42 4.1 18.2 1.0
ND1 A:HIS95 4.1 20.8 1.0
CG A:HIS42 4.1 16.8 1.0
ND1 B:HIS132 4.2 20.2 1.0
CD1 A:ILE25 4.3 13.7 0.5
CG A:HIS95 4.3 16.2 1.0
CG1 A:ILE25 4.3 13.2 0.5
CA A:GLY97 4.3 17.4 1.0
CG B:HIS132 4.3 20.2 1.0
CB A:MET88 4.5 18.6 1.0
CG A:GLU44 4.6 21.6 1.0
CD A:GLU44 4.7 20.8 1.0
N A:GLY97 4.8 16.6 1.0
C A:GLY97 4.8 15.9 1.0

Copper binding site 2 out of 2 in 3lzl

Go back to Copper Binding Sites List in 3lzl
Copper binding site 2 out of 2 in the Crystal Structure Analysis of the As-Solated P19 Protein From Campylobacter Jejuni at 1.45 A at pH 9.0


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Crystal Structure Analysis of the As-Solated P19 Protein From Campylobacter Jejuni at 1.45 A at pH 9.0 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu200

b:30.8
occ:1.00
NE2 B:HIS42 2.0 24.9 1.0
NE2 B:HIS95 2.1 25.4 1.0
NE2 A:HIS132 2.2 24.6 1.0
SD B:MET88 2.3 26.7 1.0
CE1 B:HIS42 2.9 25.8 1.0
CE1 B:HIS95 3.0 31.1 1.0
CD2 B:HIS42 3.1 27.0 1.0
CE1 A:HIS132 3.1 29.8 1.0
CD2 B:HIS95 3.1 23.2 1.0
CD2 A:HIS132 3.2 26.9 1.0
CG B:MET88 3.3 25.7 1.0
OE2 B:GLU44 3.6 39.0 1.0
CE B:MET88 3.6 29.2 1.0
ND1 B:HIS42 4.1 28.1 1.0
CG B:HIS42 4.2 27.8 1.0
ND1 B:HIS95 4.2 32.1 1.0
CD B:GLU44 4.2 35.0 1.0
CG B:HIS95 4.2 24.1 1.0
ND1 A:HIS132 4.3 24.5 1.0
CG A:HIS132 4.3 26.6 1.0
CA B:GLY97 4.4 23.1 1.0
CG B:GLU44 4.4 32.8 1.0
SD B:MET27 4.5 43.8 1.0
CB B:MET88 4.7 21.5 1.0
N B:GLY97 4.9 22.1 1.0
CE B:MET27 5.0 44.7 1.0

Reference:

A.C.Chan, T.I.Doukov, M.Scofield, S.A.Tom-Yew, A.B.Ramin, J.K.Mackichan, E.C.Gaynor, M.E.Murphy. Structure and Function of P19, A High-Affinity Iron Transporter of the Human Pathogen Campylobacter Jejuni. J.Mol.Biol. V. 401 590 2010.
ISSN: ISSN 0022-2836
PubMed: 20600116
DOI: 10.1016/J.JMB.2010.06.038
Page generated: Fri Sep 4 08:08:14 2020
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