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Copper in PDB 3l9y: Crystal Structures of Holo and Cu-Deficient Cu/Znsod From the Silkworm Bombyx Mori and the Implications in Amyotrophic Lateral Sclerosis

Enzymatic activity of Crystal Structures of Holo and Cu-Deficient Cu/Znsod From the Silkworm Bombyx Mori and the Implications in Amyotrophic Lateral Sclerosis

All present enzymatic activity of Crystal Structures of Holo and Cu-Deficient Cu/Znsod From the Silkworm Bombyx Mori and the Implications in Amyotrophic Lateral Sclerosis:
1.15.1.1;

Protein crystallography data

The structure of Crystal Structures of Holo and Cu-Deficient Cu/Znsod From the Silkworm Bombyx Mori and the Implications in Amyotrophic Lateral Sclerosis, PDB code: 3l9y was solved by N.-N.Zhang, Y.-X.He, W.-F.Li, F.Zhao, L.-F.Yan, G.-Z.Zhang, Y.-B.Teng, J.Yu, Y.Chen, C.-Z.Zhou, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.80
Space group P 64
Cell size a, b, c (Å), α, β, γ (°) 111.493, 111.493, 39.886, 90.00, 90.00, 120.00
R / Rfree (%) 22.3 / 25.8

Other elements in 3l9y:

The structure of Crystal Structures of Holo and Cu-Deficient Cu/Znsod From the Silkworm Bombyx Mori and the Implications in Amyotrophic Lateral Sclerosis also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Copper Binding Sites:

The binding sites of Copper atom in the Crystal Structures of Holo and Cu-Deficient Cu/Znsod From the Silkworm Bombyx Mori and the Implications in Amyotrophic Lateral Sclerosis (pdb code 3l9y). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the Crystal Structures of Holo and Cu-Deficient Cu/Znsod From the Silkworm Bombyx Mori and the Implications in Amyotrophic Lateral Sclerosis, PDB code: 3l9y:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in 3l9y

Go back to Copper Binding Sites List in 3l9y
Copper binding site 1 out of 2 in the Crystal Structures of Holo and Cu-Deficient Cu/Znsod From the Silkworm Bombyx Mori and the Implications in Amyotrophic Lateral Sclerosis


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structures of Holo and Cu-Deficient Cu/Znsod From the Silkworm Bombyx Mori and the Implications in Amyotrophic Lateral Sclerosis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu156

b:23.0
occ:1.00
NE2 A:HIS120 1.9 20.0 1.0
NE2 A:HIS47 2.0 17.0 1.0
ND1 A:HIS45 2.1 18.2 1.0
CE1 A:HIS47 2.9 17.7 1.0
CD2 A:HIS120 2.9 19.5 1.0
CE1 A:HIS120 2.9 20.5 1.0
CD2 A:HIS47 3.0 16.6 1.0
CE1 A:HIS45 3.1 21.8 1.0
CG A:HIS45 3.1 18.8 1.0
NE2 A:HIS62 3.4 20.6 1.0
CB A:HIS45 3.4 19.5 1.0
O A:HOH200 3.7 29.1 1.0
CD2 A:HIS62 3.7 19.5 1.0
CB A:VAL118 3.9 19.7 1.0
ND1 A:HIS120 4.0 20.6 1.0
CG A:HIS120 4.0 21.9 1.0
ND1 A:HIS47 4.0 17.4 1.0
CG1 A:VAL118 4.1 19.4 1.0
CG A:HIS47 4.1 18.2 1.0
CE1 A:HIS62 4.2 19.7 1.0
NE2 A:HIS45 4.2 19.4 1.0
CD2 A:HIS45 4.2 21.1 1.0
N A:HIS45 4.3 20.1 1.0
O A:HOH166 4.3 31.0 1.0
CA A:HIS45 4.3 19.4 1.0
O A:VAL118 4.5 20.6 1.0
O A:HIS45 4.6 18.9 1.0
CG2 A:VAL118 4.6 19.3 1.0
CG A:HIS62 4.7 21.2 1.0
C A:HIS45 4.7 19.8 1.0
ND1 A:HIS62 4.9 20.8 1.0
C A:VAL118 4.9 21.1 1.0

Copper binding site 2 out of 2 in 3l9y

Go back to Copper Binding Sites List in 3l9y
Copper binding site 2 out of 2 in the Crystal Structures of Holo and Cu-Deficient Cu/Znsod From the Silkworm Bombyx Mori and the Implications in Amyotrophic Lateral Sclerosis


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Crystal Structures of Holo and Cu-Deficient Cu/Znsod From the Silkworm Bombyx Mori and the Implications in Amyotrophic Lateral Sclerosis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu156

b:22.3
occ:1.00
NE2 B:HIS120 2.0 19.1 1.0
ND1 B:HIS45 2.1 18.6 1.0
NE2 B:HIS47 2.1 18.7 1.0
CD2 B:HIS120 2.9 18.5 1.0
CE1 B:HIS120 3.0 19.3 1.0
CG B:HIS45 3.0 19.2 1.0
CE1 B:HIS47 3.0 19.6 1.0
CE1 B:HIS45 3.1 21.8 1.0
CD2 B:HIS47 3.1 18.7 1.0
NE2 B:HIS62 3.3 22.4 1.0
CB B:HIS45 3.3 19.2 1.0
CD2 B:HIS62 3.6 20.8 1.0
CB B:VAL118 3.8 18.7 1.0
CG1 B:VAL118 4.0 19.8 1.0
O B:HOH173 4.0 29.0 1.0
CG B:HIS120 4.1 20.5 1.0
ND1 B:HIS120 4.1 18.8 1.0
ND1 B:HIS47 4.1 18.9 1.0
NE2 B:HIS45 4.2 19.3 1.0
N B:HIS45 4.2 19.3 1.0
CD2 B:HIS45 4.2 19.7 1.0
CG B:HIS47 4.2 19.2 1.0
CE1 B:HIS62 4.2 21.7 1.0
CA B:HIS45 4.3 18.9 1.0
O B:VAL118 4.4 19.5 1.0
O B:HIS45 4.5 19.2 1.0
CG2 B:VAL118 4.6 20.0 1.0
C B:HIS45 4.7 19.5 1.0
CG B:HIS62 4.7 22.3 1.0
C B:VAL118 4.8 19.8 1.0
CA B:VAL118 4.9 19.3 1.0
ND1 B:HIS62 5.0 19.1 1.0

Reference:

N.N.Zhang, Y.X.He, W.F.Li, Y.B.Teng, J.Yu, Y.Chen, C.Z.Zhou. Crystal Structures of Holo and Cu-Deficient Cu/Zn-Sod From the Silkworm Bombyx Mori and the Implications in Amyotrophic Lateral Sclerosis. Proteins V. 78 1999 2010.
ISSN: ESSN 1097-0134
PubMed: 20310068
DOI: 10.1002/PROT.22709
Page generated: Sun Dec 13 11:10:31 2020

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