Chemical elements
  Copper
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    Cuprous Compounds
    Complex Copper Compounds
    Cupric Compounds
    PDB 1a2v-1bxu
    PDB 1bxv-1fwx
    PDB 1g3d-1j9t
    PDB 1jcv-1mfm
    PDB 1mg2-1paz
    PDB 1pcs-1sii
    PDB 1sjm-1w6w
    PDB 1w77-2afn
    PDB 2ahk-2dv6
    PDB 2dws-2ggp
    PDB 2ghz-2mta
    PDB 2nrd-2vm3
    PDB 2vm4-2yah
    PDB 2yam-3bkt
    PDB 3bqv-3fyi
    PDB 3g5w-3mie
      3g5w
      3gdc
      3gyr
      3gzo
      3h4f
      3h4h
      3h56
      3hb3
      3hhs
      3hi7
      3hig
      3hii
      3hnl
      3hw7
      3i01
      3i04
      3i9z
      3ibo
      3ie9
      3iea
      3in0
      3in2
      3ir0
      3iud
      3jt2
      3jtb
      3k0i
      3k5t
      3k7r
      3kbf
      3kh3
      3kh4
      3kii
      3kn4
      3kss
      3kw7
      3kw8
      3l45
      3l9y
      3loy
      3lzl
      3lzo
      3lzp
      3lzq
      3lzr
      3m3a
      3mib
      3mic
      3mid
      3mie
    PDB 3mif-3t6v
    PDB 3t6w-9pcy

Copper in the structure of C. Elegans Cu,Zn Superoxide Dismutase (pdb 3kbf)






The binding sites of Copper atom in the structure of C. Elegans Cu,Zn Superoxide Dismutase (pdb code 3kbf). This binding sites where shown with 5.0 Angstroms radius around Copper atom.
The 3kbf structure was solved by O.N.PAKHOMOVA, A.B.TAYLOR, J.P.SCHUERMANN, V.L.CULOTTA, P.J.HART, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)32.9-1.3
Space groupC2221
a (A)39.204
b (A)68.986
c (A)110.488
alpha (°)90.00
beta (°)90.00
gamma (°)90.00
Rfactor (%)14.7
Rfree (%)15.9


Copper Binding Sites:

Copper binding site 1 out of 2 in 3kbf


Copper binding site 1 out of 2 in 3kbf
Click to enlarge
stereopicture of Copper binding site 1 out of 2 in 3kbf
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Copper in the PDB 3kbf. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Copper atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Phe44, A: His45, A: His47, A: His62, A: Val117, A: His119, A: Cu158, A: So4160, A: Hoh304,

conact list:


AtomAtomDistance (A)
CuC A:Phe444.96
CuO A:His454.61
CuNE2 A:His454.17
CuN A:His454.13
CuCB A:His453.30
CuND1 A:His452.07
CuCD2 A:His454.17
CuC A:His454.70
CuCE1 A:His453.07
CuCG A:His453.02
CuCA A:His454.22
CuNE2 A:His472.04
CuND1 A:His474.14
CuCD2 A:His473.02
CuCE1 A:His473.04
CuCG A:His474.17
CuNE2 A:His623.56
CuCD2 A:His623.84
CuCE1 A:His624.50
CuCG A:His624.87
CuO A:Val1174.12
CuCB A:Val1173.94
CuCG2 A:Val1174.82
CuC A:Val1174.67
CuCG1 A:Val1174.08
CuCA A:Val1174.89
CuNE2 A:His1192.11
CuND1 A:His1194.23
CuCD2 A:His1192.96
CuCE1 A:His1193.18
CuCG A:His1194.16
CuCU A:Cu1580.00
CuCU A:Cu1581.04
CuS A:So41604.40
CuO2 A:So41604.98
CuO4 A:So41604.48
CuO3 A:So41603.23
CuO A:Hoh3043.81

interactive model:


Copper binding site 2 out of 2 in 3kbf


Copper binding site 2 out of 2 in 3kbf
Click to enlarge
stereopicture of Copper binding site 2 out of 2 in 3kbf
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Copper in the PDB 3kbf. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Copper atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: His45, A: His47, A: His62, A: Val117, A: His119, A: Cu158, A: So4160, A: Hoh304, A: Hoh324,

conact list:


AtomAtomDistance (A)
CuNE2 A:His454.32
CuCB A:His453.97
CuND1 A:His452.44
CuCD2 A:His454.51
CuCE1 A:His453.15
CuCG A:His453.52
CuNE2 A:His472.17
CuND1 A:His473.99
CuCD2 A:His473.42
CuCE1 A:His472.74
CuCG A:His474.34
CuNE2 A:His622.94
CuND1 A:His624.84
CuCD2 A:His623.35
CuCE1 A:His624.03
CuCG A:His624.53
CuCB A:Val1174.63
CuCG1 A:Val1174.55
CuNE2 A:His1192.02
CuND1 A:His1193.90
CuCD2 A:His1193.17
CuCE1 A:His1192.73
CuCG A:His1194.13
CuCU A:Cu1581.04
CuCU A:Cu1580.00
CuS A:So41603.39
CuO1 A:So41604.51
CuO2 A:So41604.04
CuO4 A:So41603.60
CuO3 A:So41602.19
CuO A:Hoh3043.03
CuO A:Hoh3244.80

interactive model:




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