Atomistry » Copper » PDB 3iea-3mn0 » 3k7r
Atomistry »
  Copper »
    PDB 3iea-3mn0 »
      3k7r »

Copper in PDB 3k7r: Crystal Structure of [Tm][CUATX1]3

Protein crystallography data

The structure of Crystal Structure of [Tm][CUATX1]3, PDB code: 3k7r was solved by Y.Xue, H.M.Alvarez, C.D.Robinson, A.Mondragon, T.V.O'halloran, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.42 / 2.28
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 109.887, 182.242, 52.722, 90.00, 90.00, 90.00
R / Rfree (%) 20.2 / 25.6

Other elements in 3k7r:

The structure of Crystal Structure of [Tm][CUATX1]3 also contains other interesting chemical elements:

Molybdenum (Mo) 4 atoms

Copper Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 16;

Binding sites:

The binding sites of Copper atom in the Crystal Structure of [Tm][CUATX1]3 (pdb code 3k7r). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 16 binding sites of Copper where determined in the Crystal Structure of [Tm][CUATX1]3, PDB code: 3k7r:
Jump to Copper binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Copper binding site 1 out of 16 in 3k7r

Go back to Copper Binding Sites List in 3k7r
Copper binding site 1 out of 16 in the Crystal Structure of [Tm][CUATX1]3


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of [Tm][CUATX1]3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu74

b:29.8
occ:1.00
 SG A:CYS15 2.2 22.2 1.0
S2 C:4SM75 2.3 27.4 1.0
S1 C:4SM75 2.3 28.3 1.0
SG A:CYS18 2.3 24.8 1.0
MO1 C:4SM75 2.8 30.1 1.0
CU A:CU75 3.1 31.2 1.0
CB A:CYS15 3.4 21.8 1.0
N A:CYS15 3.5 23.0 1.0
N A:CYS18 3.8 19.9 1.0
CB A:CYS18 3.8 20.1 1.0
CU C:CU74 3.8 29.7 1.0
CU B:CU74 3.9 26.7 1.0
CA A:CYS15 3.9 21.8 1.0
NZ A:LYS65 4.2 24.9 1.0
O A:CYS15 4.2 21.6 1.0
CA A:CYS18 4.3 20.0 1.0
C A:CYS15 4.3 21.9 1.0
S3 C:4SM75 4.3 30.7 1.0
SG B:CYS15 4.5 22.1 1.0
SG C:CYS15 4.5 23.7 1.0
S4 C:4SM75 4.5 32.1 1.0
C A:THR14 4.6 23.3 1.0
CB A:THR14 4.6 23.6 1.0
C A:GLY17 4.6 20.8 1.0
N A:THR14 4.7 22.5 1.0
CA A:GLY17 4.8 21.1 1.0
N A:GLY17 4.8 20.6 1.0
CB B:CYS15 4.8 20.9 1.0
CA A:THR14 4.8 23.3 1.0
CG2 B:THR14 4.8 23.0 1.0

Copper binding site 2 out of 16 in 3k7r

Go back to Copper Binding Sites List in 3k7r
Copper binding site 2 out of 16 in the Crystal Structure of [Tm][CUATX1]3


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Crystal Structure of [Tm][CUATX1]3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu75

b:31.2
occ:1.00
 SG C:CYS15 2.2 23.7 1.0
SG B:CYS15 2.3 22.1 1.0
SG A:CYS15 2.3 22.2 1.0
CU A:CU74 3.1 29.8 1.0
CB A:CYS15 3.2 21.8 1.0
CU C:CU74 3.2 29.7 1.0
CU B:CU74 3.2 26.7 1.0
CB C:CYS15 3.2 21.9 1.0
CB B:CYS15 3.2 20.9 1.0
S2 C:4SM75 3.6 27.4 1.0
S1 C:4SM75 3.7 28.3 1.0
S3 C:4SM75 3.7 30.7 1.0
MO1 C:4SM75 3.9 30.1 1.0
C2 D:MLT77 4.2 46.5 1.0
O2 D:MLT77 4.4 48.6 1.0
O4 D:MLT77 4.5 41.1 1.0
C1 D:MLT77 4.5 47.0 1.0
C4 D:MLT77 4.6 46.1 1.0
CA A:CYS15 4.6 21.8 1.0
CA C:CYS15 4.6 23.2 1.0
CA B:CYS15 4.7 21.8 1.0
C3 D:MLT77 4.8 43.8 1.0
N A:CYS15 5.0 23.0 1.0

Copper binding site 3 out of 16 in 3k7r

Go back to Copper Binding Sites List in 3k7r
Copper binding site 3 out of 16 in the Crystal Structure of [Tm][CUATX1]3


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Crystal Structure of [Tm][CUATX1]3 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu74

b:26.7
occ:1.00
 S2 C:4SM75 2.2 27.4 1.0
S3 C:4SM75 2.3 30.7 1.0
SG B:CYS15 2.3 22.1 1.0
SG B:CYS18 2.4 25.0 1.0
MO1 C:4SM75 2.8 30.1 1.0
CU A:CU75 3.2 31.2 1.0
CB B:CYS15 3.5 20.9 1.0
N B:CYS15 3.6 21.5 1.0
N B:CYS18 3.7 22.2 1.0
CB B:CYS18 3.8 21.5 1.0
CU C:CU74 3.9 29.7 1.0
CU A:CU74 3.9 29.8 1.0
CA B:CYS15 4.0 21.8 1.0
CA B:CYS18 4.2 21.9 1.0
O B:CYS15 4.3 20.6 1.0
C B:CYS15 4.3 21.1 1.0
S1 C:4SM75 4.4 28.3 1.0
NZ B:LYS65 4.4 24.4 1.0
SG C:CYS15 4.4 23.7 1.0
S4 C:4SM75 4.4 32.1 1.0
C B:THR14 4.5 23.0 1.0
SG A:CYS15 4.5 22.2 1.0
CB B:THR14 4.5 24.5 1.0
C B:GLY17 4.5 21.5 1.0
CA B:GLY17 4.6 21.8 1.0
N B:GLY17 4.7 21.7 1.0
CB C:CYS15 4.7 21.9 1.0
N B:THR14 4.8 24.0 1.0
CA B:THR14 4.8 23.6 1.0

Copper binding site 4 out of 16 in 3k7r

Go back to Copper Binding Sites List in 3k7r
Copper binding site 4 out of 16 in the Crystal Structure of [Tm][CUATX1]3


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Crystal Structure of [Tm][CUATX1]3 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cu74

b:29.7
occ:1.00
 S1 C:4SM75 2.2 28.3 1.0
SG C:CYS15 2.3 23.7 1.0
S3 C:4SM75 2.3 30.7 1.0
SG C:CYS18 2.3 25.2 1.0
MO1 C:4SM75 2.8 30.1 1.0
CU A:CU75 3.2 31.2 1.0
CB C:CYS15 3.4 21.9 1.0
N C:CYS15 3.4 23.5 1.0
N C:CYS18 3.6 21.7 1.0
CB C:CYS18 3.7 20.4 1.0
CU A:CU74 3.8 29.8 1.0
CA C:CYS15 3.9 23.2 1.0
CU B:CU74 3.9 26.7 1.0
NZ C:LYS65 4.1 29.9 1.0
CA C:CYS18 4.1 22.1 1.0
S2 C:4SM75 4.3 27.4 1.0
C C:CYS15 4.3 22.4 1.0
O C:CYS15 4.3 24.0 1.0
C C:THR14 4.5 24.2 1.0
S4 C:4SM75 4.5 32.1 1.0
SG B:CYS15 4.5 22.1 1.0
SG A:CYS15 4.5 22.2 1.0
C C:GLY17 4.6 21.9 1.0
N C:THR14 4.6 23.6 1.0
CB C:THR14 4.6 24.1 1.0
N C:GLY17 4.7 21.5 1.0
CA C:GLY17 4.7 21.5 1.0
CA C:THR14 4.8 23.8 1.0
CB A:CYS15 4.9 21.8 1.0

Copper binding site 5 out of 16 in 3k7r

Go back to Copper Binding Sites List in 3k7r
Copper binding site 5 out of 16 in the Crystal Structure of [Tm][CUATX1]3


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 5 of Crystal Structure of [Tm][CUATX1]3 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cu74

b:27.9
occ:1.00
 S2 D:4SM76 2.3 30.7 1.0
SG D:CYS15 2.3 18.3 1.0
S1 D:4SM76 2.3 28.6 1.0
SG D:CYS18 2.4 22.1 1.0
MO1 D:4SM76 2.8 27.6 1.0
CU D:CU75 3.2 27.6 1.0
N D:CYS15 3.4 23.3 1.0
CB D:CYS15 3.5 21.7 1.0
N D:CYS18 3.5 19.7 1.0
CB D:CYS18 3.7 19.3 1.0
CU F:CU74 3.9 28.0 1.0
CU E:CU74 3.9 27.9 1.0
CA D:CYS15 3.9 21.7 1.0
CA D:CYS18 4.1 19.9 1.0
NZ D:LYS65 4.3 24.5 1.0
S3 D:4SM76 4.4 25.2 1.0
C D:CYS15 4.4 21.9 1.0
O D:CYS15 4.4 19.9 1.0
C D:THR14 4.4 24.4 1.0
S4 D:4SM76 4.4 31.2 1.0
CB D:THR14 4.5 24.8 1.0
C D:GLY17 4.5 20.4 1.0
SG F:CYS15 4.5 22.9 1.0
SG E:CYS15 4.6 20.6 1.0
CA D:GLY17 4.7 20.2 1.0
N D:GLY17 4.7 22.3 1.0
N D:THR14 4.7 24.1 1.0
CA D:THR14 4.8 24.3 1.0
CB E:CYS15 4.9 21.0 1.0

Copper binding site 6 out of 16 in 3k7r

Go back to Copper Binding Sites List in 3k7r
Copper binding site 6 out of 16 in the Crystal Structure of [Tm][CUATX1]3


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 6 of Crystal Structure of [Tm][CUATX1]3 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cu75

b:27.6
occ:1.00
 SG E:CYS15 2.2 20.6 1.0
SG D:CYS15 2.3 18.3 1.0
SG F:CYS15 2.3 22.9 1.0
CU E:CU74 3.1 27.9 1.0
CU F:CU74 3.1 28.0 1.0
CB E:CYS15 3.2 21.0 1.0
CB D:CYS15 3.2 21.7 1.0
CU D:CU74 3.2 27.9 1.0
CB F:CYS15 3.3 23.6 1.0
S3 D:4SM76 3.6 25.2 1.0
S1 D:4SM76 3.6 28.6 1.0
S2 D:4SM76 3.6 30.7 1.0
MO1 D:4SM76 3.8 27.6 1.0
C3 D:MLT77 4.1 43.8 1.0
C1 D:MLT77 4.4 47.0 1.0
O2 D:MLT77 4.5 48.6 1.0
C4 D:MLT77 4.5 46.1 1.0
CA D:CYS15 4.6 21.7 1.0
CA E:CYS15 4.6 21.0 1.0
O4 D:MLT77 4.7 41.1 1.0
O1 D:MLT77 4.7 50.5 1.0
C2 D:MLT77 4.7 46.5 1.0
CA F:CYS15 4.7 23.6 1.0
N D:GLY17 4.9 22.3 1.0
N D:CYS15 5.0 23.3 1.0
O3 D:MLT77 5.0 39.5 1.0

Copper binding site 7 out of 16 in 3k7r

Go back to Copper Binding Sites List in 3k7r
Copper binding site 7 out of 16 in the Crystal Structure of [Tm][CUATX1]3


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 7 of Crystal Structure of [Tm][CUATX1]3 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cu74

b:27.9
occ:1.00
 SG E:CYS15 2.2 20.6 1.0
S3 D:4SM76 2.3 25.2 1.0
S1 D:4SM76 2.3 28.6 1.0
SG E:CYS18 2.3 23.4 1.0
MO1 D:4SM76 2.8 27.6 1.0
CU D:CU75 3.1 27.6 1.0
CB E:CYS15 3.4 21.0 1.0
N E:CYS15 3.5 21.9 1.0
N E:CYS18 3.6 19.9 1.0
CB E:CYS18 3.7 20.8 1.0
CU F:CU74 3.8 28.0 1.0
CU D:CU74 3.9 27.9 1.0
CA E:CYS15 3.9 21.0 1.0
CA E:CYS18 4.1 20.4 1.0
S2 D:4SM76 4.3 30.7 1.0
C E:CYS15 4.4 21.1 1.0
NZ E:LYS65 4.4 23.9 1.0
O E:CYS15 4.4 20.9 1.0
S4 D:4SM76 4.4 31.2 1.0
C E:GLY17 4.4 20.8 1.0
SG F:CYS15 4.5 22.9 1.0
C E:THR14 4.5 23.0 1.0
SG D:CYS15 4.5 18.3 1.0
CB E:THR14 4.6 23.2 1.0
CA E:GLY17 4.6 20.8 1.0
N E:GLY17 4.7 20.6 1.0
N E:THR14 4.8 22.6 1.0
CB F:CYS15 4.8 23.6 1.0
CA E:THR14 4.9 23.3 1.0

Copper binding site 8 out of 16 in 3k7r

Go back to Copper Binding Sites List in 3k7r
Copper binding site 8 out of 16 in the Crystal Structure of [Tm][CUATX1]3


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 8 of Crystal Structure of [Tm][CUATX1]3 within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Cu74

b:28.0
occ:1.00
 S3 D:4SM76 2.2 25.2 1.0
S2 D:4SM76 2.3 30.7 1.0
SG F:CYS15 2.3 22.9 1.0
SG F:CYS18 2.4 23.9 1.0
MO1 D:4SM76 2.8 27.6 1.0
CU D:CU75 3.1 27.6 1.0
CB F:CYS15 3.4 23.6 1.0
N F:CYS15 3.5 24.2 1.0
CB F:CYS18 3.8 20.1 1.0
CU E:CU74 3.8 27.9 1.0
N F:CYS18 3.8 21.0 1.0
CU D:CU74 3.9 27.9 1.0
CA F:CYS15 3.9 23.6 1.0
CA F:CYS18 4.2 21.8 1.0
O F:CYS15 4.3 22.7 1.0
C F:CYS15 4.3 23.1 1.0
S1 D:4SM76 4.3 28.6 1.0
SG D:CYS15 4.4 18.3 1.0
NZ F:LYS65 4.4 29.5 1.0
C F:THR14 4.4 24.3 1.0
SG E:CYS15 4.5 20.6 1.0
S4 D:4SM76 4.5 31.2 1.0
CB F:THR14 4.6 25.8 1.0
CB D:CYS15 4.6 21.7 1.0
N F:THR14 4.7 25.0 1.0
C F:GLY17 4.7 21.9 1.0
CA F:THR14 4.8 25.5 1.0
N F:GLY17 4.9 22.4 1.0
CA F:GLY17 4.9 21.8 1.0
CG2 D:THR14 5.0 24.7 1.0

Copper binding site 9 out of 16 in 3k7r

Go back to Copper Binding Sites List in 3k7r
Copper binding site 9 out of 16 in the Crystal Structure of [Tm][CUATX1]3


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 9 of Crystal Structure of [Tm][CUATX1]3 within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Cu74

b:29.1
occ:1.00
 SG G:CYS15 2.2 22.8 1.0
S2 I:4SM75 2.3 31.4 1.0
SG G:CYS18 2.3 24.1 1.0
S1 I:4SM75 2.4 29.4 1.0
MO1 I:4SM75 2.8 31.8 1.0
CU G:CU75 3.2 27.8 1.0
CB G:CYS15 3.5 21.4 1.0
N G:CYS15 3.6 22.5 1.0
N G:CYS18 3.6 23.1 1.0
CB G:CYS18 3.7 22.2 1.0
CU H:CU74 3.8 30.5 1.0
CU I:CU74 3.9 28.6 1.0
CA G:CYS15 3.9 21.8 1.0
CA G:CYS18 4.1 22.9 1.0
S3 I:4SM75 4.3 31.6 1.0
C G:CYS15 4.4 21.0 1.0
O G:CYS15 4.4 19.5 1.0
C G:THR14 4.5 24.1 1.0
S4 I:4SM75 4.5 35.4 1.0
SG H:CYS15 4.5 19.3 1.0
SG I:CYS15 4.5 18.6 1.0
CB G:THR14 4.5 23.7 1.0
C G:GLY17 4.6 22.9 1.0
NZ G:LYS65 4.7 28.6 1.0
CA G:GLY17 4.7 21.7 1.0
CB H:CYS15 4.8 20.5 1.0
N G:GLY17 4.8 22.4 1.0
N G:THR14 4.9 24.8 1.0
CA G:THR14 4.9 23.6 1.0

Copper binding site 10 out of 16 in 3k7r

Go back to Copper Binding Sites List in 3k7r
Copper binding site 10 out of 16 in the Crystal Structure of [Tm][CUATX1]3


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 10 of Crystal Structure of [Tm][CUATX1]3 within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Cu75

b:27.8
occ:1.00
 SG H:CYS15 2.2 19.3 1.0
SG G:CYS15 2.3 22.8 1.0
SG I:CYS15 2.3 18.6 1.0
CB H:CYS15 3.1 20.5 1.0
CU H:CU74 3.2 30.5 1.0
CU G:CU74 3.2 29.1 1.0
CU I:CU74 3.2 28.6 1.0
CB I:CYS15 3.3 19.6 1.0
CB G:CYS15 3.3 21.4 1.0
S3 I:4SM75 3.7 31.6 1.0
S1 I:4SM75 3.8 29.4 1.0
S2 I:4SM75 3.8 31.4 1.0
MO1 I:4SM75 3.9 31.8 1.0
O1 L:MLT75 4.2 47.5 1.0
C3 L:MLT75 4.3 41.9 1.0
C1 L:MLT75 4.3 47.5 1.0
O4 L:MLT75 4.3 43.5 1.0
C4 L:MLT75 4.4 47.8 1.0
CA H:CYS15 4.6 20.3 1.0
CA I:CYS15 4.7 20.7 1.0
CA G:CYS15 4.7 21.8 1.0
C2 L:MLT75 4.8 45.7 1.0
O2 L:MLT75 4.8 47.5 1.0
N H:CYS15 5.0 21.3 1.0

Reference:

H.M.Alvarez, Y.Xue, C.D.Robinson, M.A.Canalizo-Hernandez, R.G.Marvin, R.A.Kelly, A.Mondragon, J.E.Penner-Hahn, T.V.O'halloran. Tetrathiomolybdate Inhibits Copper Trafficking Proteins Through Metal Cluster Formation. Science V. 327 331 2010.
ISSN: ISSN 0036-8075
PubMed: 19965379
DOI: 10.1126/SCIENCE.1179907
Page generated: Wed Jul 31 01:13:45 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy