Atomistry » Copper » PDB 2vr7-2xv0 » 3k5t
Atomistry »
  Copper »
    PDB 2vr7-2xv0 »
      3k5t »

Copper in PDB 3k5t: Crystal Structure of Human Diamine Oxidase in Space Group C2221

Enzymatic activity of Crystal Structure of Human Diamine Oxidase in Space Group C2221

All present enzymatic activity of Crystal Structure of Human Diamine Oxidase in Space Group C2221:
1.4.3.22;

Protein crystallography data

The structure of Crystal Structure of Human Diamine Oxidase in Space Group C2221, PDB code: 3k5t was solved by A.P.Mcgrath, J.M.Guss, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 89.09 / 2.11
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 94.771, 96.954, 178.060, 90.00, 90.00, 90.00
R / Rfree (%) 23.6 / 29

Copper Binding Sites:

The binding sites of Copper atom in the Crystal Structure of Human Diamine Oxidase in Space Group C2221 (pdb code 3k5t). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total only one binding site of Copper was determined in the Crystal Structure of Human Diamine Oxidase in Space Group C2221, PDB code: 3k5t:

Copper binding site 1 out of 1 in 3k5t

Go back to Copper Binding Sites List in 3k5t
Copper binding site 1 out of 1 in the Crystal Structure of Human Diamine Oxidase in Space Group C2221


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of Human Diamine Oxidase in Space Group C2221 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu801

b:12.6
occ:1.00
ND1 A:HIS675 1.8 3.9 1.0
NE2 A:HIS512 2.0 17.3 1.0
NE2 A:HIS510 2.1 12.6 1.0
O4 A:TPQ461 2.1 23.4 1.0
CE1 A:HIS675 2.8 9.4 1.0
CG A:HIS675 2.8 8.7 1.0
CD2 A:HIS512 2.9 15.2 1.0
CE1 A:HIS510 2.9 13.8 1.0
C4 A:TPQ461 3.0 23.8 1.0
CE1 A:HIS512 3.1 15.9 1.0
CD2 A:HIS510 3.1 15.8 1.0
CB A:HIS675 3.2 11.5 1.0
C3 A:TPQ461 3.8 23.9 1.0
NE2 A:HIS675 3.9 10.8 1.0
C5 A:TPQ461 3.9 22.9 1.0
O A:HOH930 3.9 12.9 1.0
CD2 A:HIS675 3.9 10.4 1.0
O5 A:TPQ461 4.0 22.2 0.5
CG A:HIS512 4.0 15.6 1.0
ND1 A:HIS510 4.1 14.6 1.0
ND1 A:HIS512 4.1 14.9 1.0
CG A:HIS510 4.2 16.9 1.0
CA A:HIS675 4.7 11.4 1.0
CE1 A:PHE673 4.8 19.9 1.0

Reference:

A.P.Mcgrath, K.M.Hilmer, C.A.Collyer, D.M.Dooley, J.M.Guss. A New Crystal Form of Human Diamine Oxidase. Acta Crystallogr.,Sect.F V. 66 137 2010.
ISSN: ESSN 1744-3091
PubMed: 20124708
DOI: 10.1107/S1744309109052130
Page generated: Fri Sep 4 08:06:53 2020
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy