Copper in PDB 3gdc: Crystal Structure of Multicopper Oxidase
Enzymatic activity of Crystal Structure of Multicopper Oxidase
All present enzymatic activity of Crystal Structure of Multicopper Oxidase:
1.10.3.2;
Protein crystallography data
The structure of Crystal Structure of Multicopper Oxidase, PDB code: 3gdc
was solved by
I.S.Macpherson,
W.C.Lee,
T.I.Liang,
M.E.P.Murphy,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
128.00 /
1.80
|
|
Space group
|
C 1 2 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
133.956,
50.705,
134.667,
90.00,
107.86,
90.00
|
|
R / Rfree (%)
|
19.1 /
22.5
|
Other elements in 3gdc:
The structure of Crystal Structure of Multicopper Oxidase also contains other interesting chemical elements:
Copper Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Copper atom in the Crystal Structure of Multicopper Oxidase
(pdb code 3gdc). This binding sites where shown within
5.0 Angstroms radius around Copper atom.
In total 12 binding sites of Copper where determined in the
Crystal Structure of Multicopper Oxidase, PDB code: 3gdc:
Jump to Copper binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Copper binding site 1 out
of 12 in 3gdc
Go back to
Copper Binding Sites List in 3gdc
Copper binding site 1 out
of 12 in the Crystal Structure of Multicopper Oxidase
 Mono view
 Stereo pair view
|
|
A full contact list of Copper with other atoms in the Cu binding
site number 1 of Crystal Structure of Multicopper Oxidase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cu301
b:24.5
occ:1.00
|
ND1
|
A:HIS99
|
2.1
|
15.4
|
1.0
|
|
ND1
|
A:HIS152
|
2.2
|
18.7
|
1.0
|
|
SG
|
A:CYS144
|
2.2
|
16.9
|
1.0
|
|
CE1
|
A:HIS99
|
3.0
|
17.1
|
1.0
|
|
CE1
|
A:HIS152
|
3.1
|
19.4
|
1.0
|
|
CG
|
A:HIS99
|
3.1
|
17.9
|
1.0
|
|
CG
|
A:HIS152
|
3.1
|
18.7
|
1.0
|
|
CD1
|
A:LEU157
|
3.2
|
15.0
|
1.0
|
|
CB
|
A:CYS144
|
3.3
|
15.5
|
1.0
|
|
CB
|
A:HIS99
|
3.5
|
17.1
|
1.0
|
|
CB
|
A:HIS152
|
3.5
|
19.9
|
1.0
|
|
CA
|
A:HIS99
|
3.5
|
17.8
|
1.0
|
|
O
|
A:PRO98
|
3.7
|
19.0
|
1.0
|
|
CB
|
A:GLN146
|
3.7
|
20.5
|
1.0
|
|
NE2
|
A:HIS99
|
4.1
|
17.1
|
1.0
|
|
NE2
|
A:HIS152
|
4.2
|
18.6
|
1.0
|
|
CD2
|
A:HIS99
|
4.2
|
16.8
|
1.0
|
|
CD2
|
A:HIS152
|
4.2
|
17.5
|
1.0
|
|
CA
|
A:HIS152
|
4.3
|
20.2
|
1.0
|
|
O
|
A:HIS152
|
4.4
|
21.6
|
1.0
|
|
N
|
A:THR100
|
4.4
|
16.3
|
1.0
|
|
C
|
A:PRO98
|
4.5
|
19.6
|
1.0
|
|
N
|
A:HIS99
|
4.5
|
18.4
|
1.0
|
|
CG
|
A:GLN146
|
4.6
|
21.6
|
1.0
|
|
C
|
A:HIS99
|
4.6
|
17.2
|
1.0
|
|
CE3
|
A:TRP68
|
4.6
|
17.6
|
1.0
|
|
N
|
A:GLN146
|
4.7
|
19.7
|
1.0
|
|
CA
|
A:CYS144
|
4.7
|
15.9
|
1.0
|
|
CG
|
A:LEU157
|
4.7
|
12.8
|
1.0
|
|
CZ3
|
A:TRP68
|
4.7
|
19.1
|
1.0
|
|
C
|
A:HIS152
|
4.7
|
20.3
|
1.0
|
|
CA
|
A:GLN146
|
4.8
|
20.9
|
1.0
|
|
Copper binding site 2 out
of 12 in 3gdc
Go back to
Copper Binding Sites List in 3gdc
Copper binding site 2 out
of 12 in the Crystal Structure of Multicopper Oxidase
 Mono view
 Stereo pair view
|
|
A full contact list of Copper with other atoms in the Cu binding
site number 2 of Crystal Structure of Multicopper Oxidase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cu303
b:22.0
occ:0.60
|
NE2
|
A:HIS104
|
2.0
|
19.5
|
1.0
|
|
NE2
|
A:HIS143
|
2.1
|
15.5
|
1.0
|
|
NE2
|
C:HIS282
|
2.1
|
21.7
|
1.0
|
|
CE1
|
A:HIS104
|
2.9
|
20.3
|
1.0
|
|
O
|
A:HOH439
|
2.9
|
27.6
|
1.0
|
|
CD2
|
A:HIS143
|
3.0
|
14.9
|
1.0
|
|
CE1
|
C:HIS282
|
3.1
|
22.4
|
1.0
|
|
CE1
|
A:HIS143
|
3.1
|
15.5
|
1.0
|
|
CD2
|
C:HIS282
|
3.1
|
21.3
|
1.0
|
|
CD2
|
A:HIS104
|
3.1
|
19.3
|
1.0
|
|
CU
|
C:CU302
|
4.0
|
17.8
|
0.4
|
|
ND1
|
A:HIS104
|
4.1
|
19.7
|
1.0
|
|
CG
|
A:HIS143
|
4.2
|
14.1
|
1.0
|
|
ND1
|
C:HIS282
|
4.2
|
20.9
|
1.0
|
|
ND1
|
A:HIS143
|
4.2
|
13.8
|
1.0
|
|
CG
|
A:HIS104
|
4.2
|
19.1
|
1.0
|
|
CG
|
C:HIS282
|
4.2
|
20.8
|
1.0
|
|
NE2
|
C:HIS233
|
4.3
|
20.2
|
1.0
|
|
CD2
|
A:HIS102
|
4.3
|
17.9
|
1.0
|
|
CD2
|
C:HIS233
|
4.5
|
19.1
|
1.0
|
|
NE2
|
A:HIS102
|
4.7
|
19.8
|
1.0
|
|
CD1
|
A:LEU141
|
4.8
|
15.7
|
1.0
|
|
CE1
|
C:HIS233
|
4.8
|
20.0
|
1.0
|
|
Copper binding site 3 out
of 12 in 3gdc
Go back to
Copper Binding Sites List in 3gdc
Copper binding site 3 out
of 12 in the Crystal Structure of Multicopper Oxidase
 Mono view
 Stereo pair view
|
|
A full contact list of Copper with other atoms in the Cu binding
site number 3 of Crystal Structure of Multicopper Oxidase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cu302
b:19.6
occ:0.40
|
NE2
|
B:HIS102
|
1.9
|
21.1
|
1.0
|
|
NE2
|
A:HIS233
|
1.9
|
20.6
|
1.0
|
|
CD2
|
B:HIS102
|
2.8
|
21.4
|
1.0
|
|
CD2
|
A:HIS233
|
2.8
|
19.5
|
1.0
|
|
CE1
|
B:HIS102
|
2.9
|
20.3
|
1.0
|
|
CE1
|
A:HIS233
|
2.9
|
21.0
|
1.0
|
|
O
|
A:HOH440
|
3.0
|
38.0
|
1.0
|
|
O
|
A:HOH352
|
3.3
|
26.1
|
1.0
|
|
CD2
|
A:HIS235
|
3.3
|
18.0
|
1.0
|
|
NE2
|
B:HIS104
|
3.6
|
21.4
|
1.0
|
|
NE2
|
A:HIS235
|
3.7
|
19.1
|
1.0
|
|
CD2
|
B:HIS104
|
3.9
|
20.7
|
1.0
|
|
CG
|
A:HIS235
|
3.9
|
18.1
|
1.0
|
|
CE1
|
B:HIS104
|
3.9
|
22.1
|
1.0
|
|
CG
|
B:HIS102
|
3.9
|
19.6
|
1.0
|
|
CG
|
A:HIS233
|
4.0
|
17.6
|
1.0
|
|
CU
|
B:CU303
|
4.0
|
23.5
|
0.6
|
|
ND1
|
B:HIS102
|
4.0
|
20.4
|
1.0
|
|
ND1
|
A:HIS233
|
4.0
|
20.2
|
1.0
|
|
CA
|
A:HIS235
|
4.1
|
17.3
|
1.0
|
|
ND1
|
B:HIS104
|
4.3
|
21.9
|
1.0
|
|
CG
|
B:HIS104
|
4.3
|
22.1
|
1.0
|
|
CE1
|
A:HIS235
|
4.3
|
19.4
|
1.0
|
|
CU
|
A:CU304
|
4.3
|
28.5
|
0.5
|
|
ND1
|
A:HIS235
|
4.4
|
18.8
|
1.0
|
|
CB
|
A:HIS235
|
4.5
|
18.0
|
1.0
|
|
O
|
B:PHE103
|
4.6
|
20.4
|
1.0
|
|
N
|
A:HIS235
|
4.6
|
17.4
|
1.0
|
|
O
|
A:ILE234
|
4.6
|
17.4
|
1.0
|
|
C
|
A:ILE234
|
4.8
|
17.1
|
1.0
|
|
NE2
|
B:HIS143
|
5.0
|
17.6
|
1.0
|
|
Copper binding site 4 out
of 12 in 3gdc
Go back to
Copper Binding Sites List in 3gdc
Copper binding site 4 out
of 12 in the Crystal Structure of Multicopper Oxidase
 Mono view
 Stereo pair view
|
|
A full contact list of Copper with other atoms in the Cu binding
site number 4 of Crystal Structure of Multicopper Oxidase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cu304
b:28.5
occ:0.50
|
NE2
|
A:HIS280
|
1.9
|
23.0
|
1.0
|
|
NE2
|
A:HIS235
|
1.9
|
19.1
|
1.0
|
|
NE2
|
B:HIS145
|
2.1
|
24.6
|
1.0
|
|
O
|
A:HOH440
|
2.7
|
38.0
|
1.0
|
|
CE1
|
A:HIS280
|
2.8
|
24.2
|
1.0
|
|
CE1
|
A:HIS235
|
2.8
|
19.4
|
1.0
|
|
CD2
|
B:HIS145
|
2.9
|
26.1
|
1.0
|
|
CD2
|
A:HIS280
|
2.9
|
23.2
|
1.0
|
|
CD2
|
A:HIS235
|
3.1
|
18.0
|
1.0
|
|
CE1
|
B:HIS145
|
3.1
|
25.5
|
1.0
|
|
ND1
|
A:HIS280
|
3.9
|
23.1
|
1.0
|
|
SD
|
A:MET278
|
3.9
|
25.1
|
1.0
|
|
ND1
|
A:HIS235
|
4.0
|
18.8
|
1.0
|
|
CG
|
A:HIS280
|
4.0
|
20.5
|
1.0
|
|
CG
|
B:HIS145
|
4.1
|
23.8
|
1.0
|
|
CG
|
A:HIS235
|
4.1
|
18.1
|
1.0
|
|
ND1
|
B:HIS145
|
4.2
|
26.7
|
1.0
|
|
CU
|
A:CU302
|
4.3
|
19.6
|
0.4
|
|
CD2
|
A:HIS233
|
4.4
|
19.5
|
1.0
|
|
NE2
|
B:HIS102
|
4.6
|
21.1
|
1.0
|
|
CG
|
A:MET278
|
4.6
|
22.1
|
1.0
|
|
CD2
|
B:HIS102
|
4.7
|
21.4
|
1.0
|
|
CB
|
A:MET278
|
4.8
|
20.2
|
1.0
|
|
NE2
|
A:HIS233
|
4.9
|
20.6
|
1.0
|
|
Copper binding site 5 out
of 12 in 3gdc
Go back to
Copper Binding Sites List in 3gdc
Copper binding site 5 out
of 12 in the Crystal Structure of Multicopper Oxidase
 Mono view
 Stereo pair view
|
|
A full contact list of Copper with other atoms in the Cu binding
site number 5 of Crystal Structure of Multicopper Oxidase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cu301
b:30.3
occ:1.00
|
ND1
|
B:HIS152
|
2.1
|
22.3
|
1.0
|
|
ND1
|
B:HIS99
|
2.1
|
19.8
|
1.0
|
|
SG
|
B:CYS144
|
2.2
|
19.3
|
1.0
|
|
CE1
|
B:HIS152
|
3.0
|
22.4
|
1.0
|
|
CE1
|
B:HIS99
|
3.0
|
23.6
|
1.0
|
|
CG
|
B:HIS152
|
3.1
|
24.3
|
1.0
|
|
CG
|
B:HIS99
|
3.1
|
22.1
|
1.0
|
|
CB
|
B:CYS144
|
3.2
|
19.7
|
1.0
|
|
CD1
|
B:LEU157
|
3.3
|
19.2
|
1.0
|
|
CB
|
B:HIS152
|
3.4
|
24.3
|
1.0
|
|
CB
|
B:HIS99
|
3.5
|
21.6
|
1.0
|
|
CA
|
B:HIS99
|
3.6
|
21.9
|
1.0
|
|
O
|
B:PRO98
|
3.6
|
23.1
|
1.0
|
|
CB
|
B:GLN146
|
3.7
|
25.7
|
1.0
|
|
NE2
|
B:HIS152
|
4.1
|
24.4
|
1.0
|
|
CD2
|
B:HIS152
|
4.2
|
23.1
|
1.0
|
|
NE2
|
B:HIS99
|
4.2
|
23.0
|
1.0
|
|
CA
|
B:HIS152
|
4.2
|
24.9
|
1.0
|
|
CD2
|
B:HIS99
|
4.2
|
22.6
|
1.0
|
|
O
|
B:HIS152
|
4.4
|
26.1
|
1.0
|
|
C
|
B:PRO98
|
4.5
|
23.7
|
1.0
|
|
N
|
B:THR100
|
4.5
|
20.5
|
1.0
|
|
N
|
B:HIS99
|
4.5
|
23.0
|
1.0
|
|
CG
|
B:GLN146
|
4.5
|
26.2
|
1.0
|
|
C
|
B:HIS99
|
4.6
|
21.6
|
1.0
|
|
CE3
|
B:TRP68
|
4.6
|
23.7
|
1.0
|
|
CA
|
B:CYS144
|
4.6
|
20.0
|
1.0
|
|
N
|
B:GLN146
|
4.6
|
24.6
|
1.0
|
|
CG
|
B:LEU157
|
4.7
|
18.3
|
1.0
|
|
C
|
B:HIS152
|
4.7
|
25.0
|
1.0
|
|
CZ3
|
B:TRP68
|
4.7
|
24.3
|
1.0
|
|
CA
|
B:GLN146
|
4.8
|
25.9
|
1.0
|
|
Copper binding site 6 out
of 12 in 3gdc
Go back to
Copper Binding Sites List in 3gdc
Copper binding site 6 out
of 12 in the Crystal Structure of Multicopper Oxidase
 Mono view
 Stereo pair view
|
|
A full contact list of Copper with other atoms in the Cu binding
site number 6 of Crystal Structure of Multicopper Oxidase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cu303
b:23.5
occ:0.60
|
NE2
|
B:HIS104
|
2.0
|
21.4
|
1.0
|
|
NE2
|
B:HIS143
|
2.1
|
17.6
|
1.0
|
|
NE2
|
A:HIS282
|
2.1
|
24.3
|
1.0
|
|
CE1
|
B:HIS104
|
2.8
|
22.1
|
1.0
|
|
O
|
A:HOH440
|
2.9
|
38.0
|
1.0
|
|
CD2
|
B:HIS143
|
3.0
|
18.8
|
1.0
|
|
CE1
|
A:HIS282
|
3.1
|
24.3
|
1.0
|
|
CD2
|
A:HIS282
|
3.1
|
23.9
|
1.0
|
|
CD2
|
B:HIS104
|
3.1
|
20.7
|
1.0
|
|
CE1
|
B:HIS143
|
3.1
|
20.2
|
1.0
|
|
ND1
|
B:HIS104
|
4.0
|
21.9
|
1.0
|
|
CU
|
A:CU302
|
4.0
|
19.6
|
0.4
|
|
CG
|
B:HIS104
|
4.2
|
22.1
|
1.0
|
|
CG
|
B:HIS143
|
4.2
|
18.3
|
1.0
|
|
ND1
|
A:HIS282
|
4.2
|
23.9
|
1.0
|
|
ND1
|
B:HIS143
|
4.2
|
16.7
|
1.0
|
|
CG
|
A:HIS282
|
4.2
|
22.2
|
1.0
|
|
NE2
|
A:HIS233
|
4.3
|
20.6
|
1.0
|
|
CD2
|
B:HIS102
|
4.3
|
21.4
|
1.0
|
|
CD2
|
A:HIS233
|
4.5
|
19.5
|
1.0
|
|
NE2
|
B:HIS102
|
4.7
|
21.1
|
1.0
|
|
CE1
|
A:HIS233
|
4.9
|
21.0
|
1.0
|
|
CD1
|
B:LEU141
|
4.9
|
18.0
|
1.0
|
|
Copper binding site 7 out
of 12 in 3gdc
Go back to
Copper Binding Sites List in 3gdc
Copper binding site 7 out
of 12 in the Crystal Structure of Multicopper Oxidase
 Mono view
 Stereo pair view
|
|
A full contact list of Copper with other atoms in the Cu binding
site number 7 of Crystal Structure of Multicopper Oxidase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cu302
b:31.5
occ:0.40
|
NE2
|
C:HIS102
|
1.8
|
30.1
|
1.0
|
|
NE2
|
B:HIS233
|
1.9
|
26.7
|
1.0
|
|
CE1
|
C:HIS102
|
2.8
|
30.4
|
1.0
|
|
CD2
|
C:HIS102
|
2.8
|
28.4
|
1.0
|
|
CE1
|
B:HIS233
|
2.8
|
26.7
|
1.0
|
|
CD2
|
B:HIS233
|
2.9
|
25.8
|
1.0
|
|
O
|
B:HOH417
|
3.2
|
35.7
|
1.0
|
|
O
|
C:HOH397
|
3.3
|
36.7
|
1.0
|
|
CD2
|
B:HIS235
|
3.5
|
25.6
|
1.0
|
|
NE2
|
C:HIS104
|
3.6
|
29.5
|
1.0
|
|
NE2
|
B:HIS235
|
3.8
|
26.5
|
1.0
|
|
CD2
|
C:HIS104
|
3.9
|
29.1
|
1.0
|
|
ND1
|
C:HIS102
|
3.9
|
29.2
|
1.0
|
|
ND1
|
B:HIS233
|
4.0
|
26.8
|
1.0
|
|
CG
|
C:HIS102
|
4.0
|
28.1
|
1.0
|
|
CG
|
B:HIS235
|
4.0
|
25.6
|
1.0
|
|
CE1
|
C:HIS104
|
4.0
|
28.6
|
1.0
|
|
CG
|
B:HIS233
|
4.0
|
25.1
|
1.0
|
|
CU
|
C:CU303
|
4.1
|
31.3
|
0.6
|
|
CA
|
B:HIS235
|
4.1
|
25.6
|
1.0
|
|
CG
|
C:HIS104
|
4.3
|
28.3
|
1.0
|
|
CE1
|
B:HIS235
|
4.4
|
26.6
|
1.0
|
|
ND1
|
C:HIS104
|
4.4
|
28.1
|
1.0
|
|
CU
|
B:CU304
|
4.4
|
34.2
|
0.5
|
|
ND1
|
B:HIS235
|
4.5
|
26.3
|
1.0
|
|
CB
|
B:HIS235
|
4.6
|
25.6
|
1.0
|
|
O
|
C:PHE103
|
4.6
|
28.7
|
1.0
|
|
N
|
B:HIS235
|
4.6
|
25.6
|
1.0
|
|
O
|
B:ILE234
|
4.7
|
25.7
|
1.0
|
|
C
|
B:ILE234
|
4.9
|
25.8
|
1.0
|
|
NE2
|
C:HIS143
|
4.9
|
24.8
|
1.0
|
|
O
|
B:HOH403
|
5.0
|
34.8
|
1.0
|
|
Copper binding site 8 out
of 12 in 3gdc
Go back to
Copper Binding Sites List in 3gdc
Copper binding site 8 out
of 12 in the Crystal Structure of Multicopper Oxidase
 Mono view
 Stereo pair view
|
|
A full contact list of Copper with other atoms in the Cu binding
site number 8 of Crystal Structure of Multicopper Oxidase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cu304
b:34.2
occ:0.50
|
NE2
|
B:HIS235
|
2.0
|
26.5
|
1.0
|
|
NE2
|
B:HIS280
|
2.0
|
30.4
|
1.0
|
|
NE2
|
C:HIS145
|
2.0
|
31.2
|
1.0
|
|
O
|
C:HOH397
|
2.6
|
36.7
|
1.0
|
|
CE1
|
B:HIS280
|
2.8
|
29.3
|
1.0
|
|
CE1
|
B:HIS235
|
2.9
|
26.6
|
1.0
|
|
CD2
|
C:HIS145
|
2.9
|
30.7
|
1.0
|
|
CE1
|
C:HIS145
|
3.1
|
31.5
|
1.0
|
|
CD2
|
B:HIS235
|
3.1
|
25.6
|
1.0
|
|
CD2
|
B:HIS280
|
3.1
|
28.0
|
1.0
|
|
ND1
|
B:HIS280
|
4.0
|
28.6
|
1.0
|
|
SD
|
B:MET278
|
4.1
|
32.7
|
1.0
|
|
CG
|
C:HIS145
|
4.1
|
29.5
|
1.0
|
|
ND1
|
B:HIS235
|
4.1
|
26.3
|
1.0
|
|
ND1
|
C:HIS145
|
4.1
|
31.6
|
1.0
|
|
CG
|
B:HIS280
|
4.1
|
26.7
|
1.0
|
|
CG
|
B:HIS235
|
4.2
|
25.6
|
1.0
|
|
CD2
|
B:HIS233
|
4.4
|
25.8
|
1.0
|
|
CU
|
B:CU302
|
4.4
|
31.5
|
0.4
|
|
NE2
|
C:HIS102
|
4.6
|
30.1
|
1.0
|
|
CG
|
B:MET278
|
4.7
|
30.0
|
1.0
|
|
CD2
|
C:HIS102
|
4.7
|
28.4
|
1.0
|
|
CD2
|
C:LEU149
|
4.8
|
35.6
|
1.0
|
|
CB
|
B:MET278
|
4.9
|
28.6
|
1.0
|
|
NE2
|
B:HIS233
|
4.9
|
26.7
|
1.0
|
|
Copper binding site 9 out
of 12 in 3gdc
Go back to
Copper Binding Sites List in 3gdc
Copper binding site 9 out
of 12 in the Crystal Structure of Multicopper Oxidase
 Mono view
 Stereo pair view
|
|
A full contact list of Copper with other atoms in the Cu binding
site number 9 of Crystal Structure of Multicopper Oxidase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cu302
b:17.8
occ:0.40
|
NE2
|
C:HIS233
|
1.8
|
20.2
|
1.0
|
|
NE2
|
A:HIS102
|
1.9
|
19.8
|
1.0
|
|
CD2
|
C:HIS233
|
2.8
|
19.1
|
1.0
|
|
CE1
|
C:HIS233
|
2.8
|
20.0
|
1.0
|
|
CD2
|
A:HIS102
|
2.9
|
17.9
|
1.0
|
|
CE1
|
A:HIS102
|
2.9
|
19.1
|
1.0
|
|
O
|
A:HOH439
|
3.0
|
27.6
|
1.0
|
|
O
|
C:HOH330
|
3.1
|
23.0
|
1.0
|
|
CD2
|
C:HIS235
|
3.3
|
18.0
|
1.0
|
|
NE2
|
A:HIS104
|
3.6
|
19.5
|
1.0
|
|
NE2
|
C:HIS235
|
3.7
|
20.5
|
1.0
|
|
CG
|
C:HIS235
|
3.9
|
18.4
|
1.0
|
|
CD2
|
A:HIS104
|
3.9
|
19.3
|
1.0
|
|
ND1
|
C:HIS233
|
3.9
|
20.8
|
1.0
|
|
CG
|
C:HIS233
|
3.9
|
17.4
|
1.0
|
|
ND1
|
A:HIS102
|
4.0
|
16.3
|
1.0
|
|
CG
|
A:HIS102
|
4.0
|
17.2
|
1.0
|
|
CU
|
A:CU303
|
4.0
|
22.0
|
0.6
|
|
CE1
|
A:HIS104
|
4.0
|
20.3
|
1.0
|
|
CA
|
C:HIS235
|
4.1
|
18.1
|
1.0
|
|
CE1
|
C:HIS235
|
4.3
|
20.1
|
1.0
|
|
CU
|
C:CU304
|
4.4
|
24.2
|
0.5
|
|
ND1
|
C:HIS235
|
4.4
|
20.0
|
1.0
|
|
CG
|
A:HIS104
|
4.4
|
19.1
|
1.0
|
|
ND1
|
A:HIS104
|
4.5
|
19.7
|
1.0
|
|
CB
|
C:HIS235
|
4.5
|
17.9
|
1.0
|
|
O
|
A:PHE103
|
4.6
|
18.3
|
1.0
|
|
N
|
C:HIS235
|
4.6
|
17.8
|
1.0
|
|
O
|
C:ILE234
|
4.7
|
18.7
|
1.0
|
|
C
|
C:ILE234
|
4.9
|
17.9
|
1.0
|
|
Copper binding site 10 out
of 12 in 3gdc
Go back to
Copper Binding Sites List in 3gdc
Copper binding site 10 out
of 12 in the Crystal Structure of Multicopper Oxidase
 Mono view
 Stereo pair view
|
|
A full contact list of Copper with other atoms in the Cu binding
site number 10 of Crystal Structure of Multicopper Oxidase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cu304
b:24.2
occ:0.50
|
NE2
|
A:HIS145
|
1.9
|
22.6
|
1.0
|
|
NE2
|
C:HIS280
|
2.0
|
24.7
|
1.0
|
|
NE2
|
C:HIS235
|
2.0
|
20.5
|
1.0
|
|
O
|
A:HOH439
|
2.8
|
27.6
|
1.0
|
|
CE1
|
C:HIS235
|
2.9
|
20.1
|
1.0
|
|
CE1
|
C:HIS280
|
2.9
|
24.4
|
1.0
|
|
CD2
|
A:HIS145
|
2.9
|
23.1
|
1.0
|
|
CE1
|
A:HIS145
|
2.9
|
22.6
|
1.0
|
|
CD2
|
C:HIS280
|
3.0
|
23.1
|
1.0
|
|
CD2
|
C:HIS235
|
3.2
|
18.0
|
1.0
|
|
SD
|
C:MET278
|
3.9
|
26.0
|
1.0
|
|
ND1
|
C:HIS280
|
4.0
|
23.6
|
1.0
|
|
ND1
|
A:HIS145
|
4.0
|
22.3
|
1.0
|
|
CG
|
A:HIS145
|
4.0
|
19.6
|
1.0
|
|
ND1
|
C:HIS235
|
4.0
|
20.0
|
1.0
|
|
CG
|
C:HIS280
|
4.1
|
21.8
|
1.0
|
|
O
|
C:HOH400
|
4.1
|
47.7
|
1.0
|
|
CG
|
C:HIS235
|
4.2
|
18.4
|
1.0
|
|
CU
|
C:CU302
|
4.4
|
17.8
|
0.4
|
|
CD2
|
C:HIS233
|
4.4
|
19.1
|
1.0
|
|
NE2
|
A:HIS102
|
4.7
|
19.8
|
1.0
|
|
CG
|
C:MET278
|
4.8
|
23.3
|
1.0
|
|
CB
|
C:MET278
|
4.8
|
21.2
|
1.0
|
|
CD2
|
A:HIS102
|
4.9
|
17.9
|
1.0
|
|
NE2
|
C:HIS233
|
4.9
|
20.2
|
1.0
|
|
Reference:
I.S.Macpherson,
W.C.Lee,
T.I.Liang,
M.E.P.Murphy.
A Trimeric Multicopper Oxidase Provides An Evolutionary Link to Nitrite Reductase To Be Published.
Page generated: Wed Jul 31 00:57:44 2024
|
