Chemical elements
  Copper
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    Chemical Properties
    Cuprous Compounds
    Complex Copper Compounds
    Cupric Compounds
    PDB 1a2v-1bxu
    PDB 1bxv-1fwx
    PDB 1g3d-1j9t
    PDB 1jcv-1mfm
    PDB 1mg2-1paz
    PDB 1pcs-1sii
    PDB 1sjm-1w6w
    PDB 1w77-2afn
    PDB 2ahk-2dv6
    PDB 2dws-2ggp
    PDB 2ghz-2mta
    PDB 2nrd-2vm3
    PDB 2vm4-2yah
    PDB 2yam-3bkt
    PDB 3bqv-3fyi
      3bqv
      3bvd
      3c75
      3cdz
      3ce1
      3cg8
      3chx
      3ciq
      3cqp
      3cvb
      3cvc
      3cvd
      3cwy
      3de8
      3div
      3dkh
      3dso
      3dtu
      3e0i
      3e12
      3e6z
      3ef4
      3eh3
      3eh4
      3eh5
      3ehb
      3eim
      3epv
      3erx
      3f00
      3f01
      3f7k
      3f7l
      3fbo
      3fpx
      3fpy
      3fq1
      3fq2
      3fqy
      3fs9
      3fsa
      3fsv
      3fsw
      3fsz
      3ft0
      3fu7
      3fu8
      3fu9
      3fye
      3fyi
    PDB 3g5w-3mie
    PDB 3mif-3t6v
    PDB 3t6w-9pcy

Copper in the structure of Azurin C112D/M121F (pdb 3fq2)






The binding sites of Copper atom in the structure of Azurin C112D/M121F (pdb code 3fq2). This binding sites where shown with 5.0 Angstroms radius around Copper atom.
The 3fq2 structure was solved by K.M.LANCASTER, H.B.GRAY, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)18.1-1.9
Space groupC2221
a (A)48.360
b (A)54.760
c (A)95.540
alpha (°)90.00
beta (°)90.00
gamma (°)90.00
Rfactor (%)20
Rfree (%)24.5


Copper Binding Sites:

Copper binding site 1 out of 2 in 3fq2


Copper binding site 1 out of 2 in 3fq2
Click to enlarge
stereopicture of Copper binding site 1 out of 2 in 3fq2
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Copper in the PDB 3fq2. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Copper atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Met13, A: Phe15, A: Met44, A: Gly45, A: His46, A: Asn47, A: Asp112, A: Phe114, A: His117,

conact list:


AtomAtomDistance (A)
CuCE A:Met134.17
CuSD A:Met134.03
CuCZ A:Phe154.69
CuO A:Met444.57
CuCE A:Met444.27
CuC A:Met444.78
CuO A:Gly452.44
CuN A:Gly454.81
CuC A:Gly453.38
CuCA A:Gly454.70
CuNE2 A:His464.08
CuN A:His463.71
CuCB A:His463.34
CuND1 A:His461.97
CuCD2 A:His464.10
CuC A:His464.59
CuCE1 A:His462.97
CuCG A:His462.97
CuCA A:His463.21
CuN A:Asn474.87
CuCB A:Asp1124.24
CuOD2 A:Asp1122.00
CuOD1 A:Asp1123.27
CuCG A:Asp1122.95
CuCB A:Phe1143.97
CuCD2 A:Phe1144.80
CuCG A:Phe1144.58
CuNE2 A:His1174.02
CuCB A:His1173.49
CuND1 A:His1171.99
CuCD2 A:His1174.14
CuCE1 A:His1172.87
CuCG A:His1173.06

interactive model:


Copper binding site 2 out of 2 in 3fq2


Copper binding site 2 out of 2 in 3fq2
Click to enlarge
stereopicture of Copper binding site 2 out of 2 in 3fq2
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Copper in the PDB 3fq2. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Copper atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Ala1, A: Glu2, A: Cys3, A: Ser25, A: Cys26, A: Trs131, A: Hoh139, A: Hoh172,

conact list:


AtomAtomDistance (A)
CuO A:Ala12.32
CuN A:Ala12.11
CuC A:Ala13.07
CuCB A:Ala13.77
CuCA A:Ala13.13
CuN A:Glu24.37
CuSG A:Cys34.29
CuOG A:Ser254.17
CuSG A:Cys264.87
CuN A:Trs1312.13
CuC1 A:Trs1313.91
CuO1 A:Trs1314.43
CuC3 A:Trs1313.22
CuC A:Trs1313.14
CuO3 A:Trs1312.78
CuC2 A:Trs1314.27
CuO A:Hoh1394.14
CuO A:Hoh1722.16

interactive model:




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