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Copper in PDB 3f01: Crystal Structure of Synaptotagmin I C2A Domain with Cu(II)

Protein crystallography data

The structure of Crystal Structure of Synaptotagmin I C2A Domain with Cu(II), PDB code: 3f01 was solved by F.Guo, R.Dakshinamurthy, S.K.K.Thallapuranam, J.Sakon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.98 / 1.70
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 42.088, 38.561, 44.267, 90.00, 97.35, 90.00
R / Rfree (%) 19.3 / 22.9

Copper Binding Sites:

The binding sites of Copper atom in the Crystal Structure of Synaptotagmin I C2A Domain with Cu(II) (pdb code 3f01). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the Crystal Structure of Synaptotagmin I C2A Domain with Cu(II), PDB code: 3f01:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in 3f01

Go back to Copper Binding Sites List in 3f01
Copper binding site 1 out of 2 in the Crystal Structure of Synaptotagmin I C2A Domain with Cu(II)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of Synaptotagmin I C2A Domain with Cu(II) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu266

b:38.5
occ:0.80
NE2 A:HIS254 1.8 21.1 0.5
CD2 A:HIS254 2.8 21.0 0.5
CE1 A:HIS254 2.9 21.3 0.5
ND1 A:HIS254 3.9 20.9 0.5
CG A:HIS254 3.9 20.7 0.5
CD2 A:HIS254 4.4 21.4 0.5
O A:HOH333 4.8 49.6 1.0

Copper binding site 2 out of 2 in 3f01

Go back to Copper Binding Sites List in 3f01
Copper binding site 2 out of 2 in the Crystal Structure of Synaptotagmin I C2A Domain with Cu(II)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Crystal Structure of Synaptotagmin I C2A Domain with Cu(II) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu267

b:23.5
occ:0.20
NE2 A:HIS254 1.7 21.5 0.5
CE1 A:HIS254 2.6 21.4 0.5
CD2 A:HIS254 2.7 21.4 0.5
ND1 A:HIS254 3.7 21.4 0.5
CG A:HIS254 3.8 21.2 0.5
O A:HOH337 4.3 39.8 1.0
CD2 A:HIS254 4.4 21.0 0.5

Reference:

F.Guo, R.Dakshinamurthy, S.K.K.Thallapuranam, J.Sakon. Crystal Structure of Synaptotagmin I C2A To Be Published.
Page generated: Thu Sep 3 17:12:31 2020
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