Atomistry » Copper » PDB 3f00-3ie9 » 3f00
Atomistry »
  Copper »
    PDB 3f00-3ie9 »
      3f00 »

Copper in PDB 3f00: Crystal Structure of Synaptotagmin I C2A Domain with Cu(II)

Protein crystallography data

The structure of Crystal Structure of Synaptotagmin I C2A Domain with Cu(II), PDB code: 3f00 was solved by F.Guo, R.Dakshinamurthy, S.K.K.Thallapuranam, J.Sakon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.60 / 1.36
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 41.647, 38.363, 44.016, 90.00, 98.37, 90.00
R / Rfree (%) 20.1 / 24.4

Copper Binding Sites:

The binding sites of Copper atom in the Crystal Structure of Synaptotagmin I C2A Domain with Cu(II) (pdb code 3f00). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the Crystal Structure of Synaptotagmin I C2A Domain with Cu(II), PDB code: 3f00:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in 3f00

Go back to Copper Binding Sites List in 3f00
Copper binding site 1 out of 2 in the Crystal Structure of Synaptotagmin I C2A Domain with Cu(II)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of Synaptotagmin I C2A Domain with Cu(II) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu266

b:23.7
occ:1.00
NE2 A:HIS254 1.9 18.5 0.8
O A:HOH319 2.5 31.2 1.0
CD2 A:HIS254 2.9 18.8 0.8
CE1 A:HIS254 2.9 18.8 0.8
ND1 A:HIS254 4.0 18.5 0.8
CG A:HIS254 4.0 18.3 0.8
O A:HOH32 4.5 22.5 1.0
CU A:CU267 5.0 0.3 1.0

Copper binding site 2 out of 2 in 3f00

Go back to Copper Binding Sites List in 3f00
Copper binding site 2 out of 2 in the Crystal Structure of Synaptotagmin I C2A Domain with Cu(II)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Crystal Structure of Synaptotagmin I C2A Domain with Cu(II) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu267

b:0.3
occ:1.00
NE2 A:HIS254 3.0 16.6 0.2
CD2 A:HIS254 3.1 16.8 0.2
CD2 A:HIS254 4.2 18.8 0.8
CE1 A:HIS254 4.3 16.7 0.2
O A:HOH319 4.4 31.2 1.0
CG A:HIS254 4.5 16.8 0.2
O A:HOH135 4.7 29.7 1.0
CU A:CU266 5.0 23.7 1.0
ND1 A:HIS254 5.0 16.8 0.2

Reference:

F.Guo, R.Dakshinamurthy, S.K.K.Thallapuranam, J.Sakon. Crystal Structure of Synaptotagmin I C2A To Be Published.
Page generated: Wed Jul 31 00:54:28 2024

Last articles

Cl in 4YLI
Cl in 4YM8
Cl in 4YLC
Cl in 4YKH
Cl in 4YLB
Cl in 4YL3
Cl in 4YKW
Cl in 4YL0
Cl in 4YKX
Cl in 4YKU
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy