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Copper in PDB 3cvc: Regulation of Protein Function: Crystal Packing Interfaces and Conformational Dimerization

Protein crystallography data

The structure of Regulation of Protein Function: Crystal Packing Interfaces and Conformational Dimerization, PDB code: 3cvc was solved by P.B.Crowley, P.M.Matias, H.Mi, S.J.Firbank, M.J.Banfield, C.Dennison, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 17.08 / 1.72
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 23.985, 55.520, 64.992, 90.00, 90.00, 90.00
R / Rfree (%) 13.1 / 19.2

Other elements in 3cvc:

The structure of Regulation of Protein Function: Crystal Packing Interfaces and Conformational Dimerization also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Copper Binding Sites:

The binding sites of Copper atom in the Regulation of Protein Function: Crystal Packing Interfaces and Conformational Dimerization (pdb code 3cvc). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total only one binding site of Copper was determined in the Regulation of Protein Function: Crystal Packing Interfaces and Conformational Dimerization, PDB code: 3cvc:

Copper binding site 1 out of 1 in 3cvc

Go back to Copper Binding Sites List in 3cvc
Copper binding site 1 out of 1 in the Regulation of Protein Function: Crystal Packing Interfaces and Conformational Dimerization


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Regulation of Protein Function: Crystal Packing Interfaces and Conformational Dimerization within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu106

b:14.1
occ:1.00
ND1 A:HIS39 2.1 9.4 1.0
ND1 A:HIS92 2.1 9.9 1.0
SG A:CYS89 2.2 10.6 1.0
SD A:MET97 2.8 8.6 1.0
CE1 A:HIS92 3.0 11.9 1.0
CE1 A:HIS39 3.0 10.2 1.0
CG A:HIS39 3.1 9.4 1.0
CG A:HIS92 3.1 10.6 1.0
CB A:CYS89 3.2 9.3 1.0
CB A:HIS39 3.4 10.3 1.0
CB A:HIS92 3.5 10.9 1.0
CE A:MET97 3.5 9.8 1.0
CA A:HIS39 3.7 11.2 1.0
O A:PRO38 3.8 11.9 1.0
CG A:MET97 4.2 9.4 1.0
NE2 A:HIS39 4.2 9.2 1.0
NE2 A:HIS92 4.2 13.4 1.0
CD2 A:HIS39 4.2 10.5 1.0
CD2 A:HIS92 4.2 11.5 1.0
CG A:PRO91 4.4 12.8 1.0
N A:HIS92 4.4 10.8 1.0
N A:HIS39 4.5 11.8 1.0
C A:PRO38 4.5 12.5 1.0
CA A:CYS89 4.6 10.3 1.0
CA A:HIS92 4.6 11.0 1.0
CB A:MET97 4.7 8.8 1.0
N A:ASN40 4.8 10.2 1.0
C A:HIS39 4.8 11.0 1.0
C A:CYS89 5.0 10.6 1.0

Reference:

P.B.Crowley, P.M.Matias, H.Mi, S.J.Firbank, M.J.Banfield, C.Dennison. Regulation of Protein Function: Crystal Packing Interfaces and Conformational Dimerization. Biochemistry V. 47 6583 2008.
ISSN: ISSN 0006-2960
PubMed: 18479147
DOI: 10.1021/BI800125H
Page generated: Sun Dec 13 11:09:21 2020

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