Copper in PDB 3cg8: Laccase From Streptomyces Coelicolor
Enzymatic activity of Laccase From Streptomyces Coelicolor
All present enzymatic activity of Laccase From Streptomyces Coelicolor:
1.10.3.2;
Protein crystallography data
The structure of Laccase From Streptomyces Coelicolor, PDB code: 3cg8
was solved by
T.Skalova,
J.Dohnalek,
L.H.Ostergaard,
P.R.Ostergaard,
P.Kolenko,
J.Duskova,
J.Hasek,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
28.54 /
2.68
|
|
Space group
|
P 43 21 2
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
180.868,
180.868,
177.111,
90.00,
90.00,
90.00
|
|
R / Rfree (%)
|
17.2 /
19.4
|
Copper Binding Sites:
The binding sites of Copper atom in the Laccase From Streptomyces Coelicolor
(pdb code 3cg8). This binding sites where shown within
5.0 Angstroms radius around Copper atom.
In total 12 binding sites of Copper where determined in the
Laccase From Streptomyces Coelicolor, PDB code: 3cg8:
Jump to Copper binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
11;
12;
Copper binding site 1 out
of 12 in 3cg8
Go back to
Copper Binding Sites List in 3cg8
Copper binding site 1 out
of 12 in the Laccase From Streptomyces Coelicolor
 Mono view
 Stereo pair view
|
|
A full contact list of Copper with other atoms in the Cu binding
site number 1 of Laccase From Streptomyces Coelicolor within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cu411
b:30.2
occ:1.00
|
ND1
|
A:HIS293
|
1.9
|
28.4
|
1.0
|
|
ND1
|
A:HIS231
|
2.0
|
27.3
|
1.0
|
|
SG
|
A:CYS288
|
2.2
|
26.6
|
1.0
|
|
CE1
|
A:HIS293
|
2.9
|
26.7
|
1.0
|
|
CG
|
A:HIS293
|
2.9
|
29.3
|
1.0
|
|
CE1
|
A:HIS231
|
3.0
|
26.0
|
1.0
|
|
CG
|
A:HIS231
|
3.0
|
25.5
|
1.0
|
|
CB
|
A:CYS288
|
3.3
|
26.6
|
1.0
|
|
CB
|
A:HIS293
|
3.3
|
29.4
|
1.0
|
|
CB
|
A:HIS231
|
3.3
|
25.2
|
1.0
|
|
SD
|
A:MET298
|
3.5
|
32.9
|
1.0
|
|
CA
|
A:HIS231
|
3.7
|
25.1
|
1.0
|
|
CE
|
A:MET298
|
3.9
|
35.4
|
1.0
|
|
NE2
|
A:HIS293
|
4.0
|
25.7
|
1.0
|
|
O
|
A:TYR230
|
4.0
|
23.5
|
1.0
|
|
CD2
|
A:HIS293
|
4.0
|
28.0
|
1.0
|
|
CG2
|
A:VAL290
|
4.1
|
22.0
|
1.0
|
|
NE2
|
A:HIS231
|
4.1
|
24.0
|
1.0
|
|
CB
|
A:VAL290
|
4.1
|
25.0
|
1.0
|
|
CD2
|
A:HIS231
|
4.1
|
23.9
|
1.0
|
|
N
|
A:THR232
|
4.6
|
24.9
|
1.0
|
|
N
|
A:HIS231
|
4.6
|
24.6
|
1.0
|
|
CA
|
A:CYS288
|
4.7
|
26.5
|
1.0
|
|
C
|
A:HIS231
|
4.7
|
24.6
|
1.0
|
|
C
|
A:TYR230
|
4.8
|
24.8
|
1.0
|
|
CA
|
A:HIS293
|
4.8
|
30.2
|
1.0
|
|
CG
|
A:MET298
|
5.0
|
32.9
|
1.0
|
|
CG1
|
A:VAL290
|
5.0
|
21.2
|
1.0
|
|
Copper binding site 2 out
of 12 in 3cg8
Go back to
Copper Binding Sites List in 3cg8
Copper binding site 2 out
of 12 in the Laccase From Streptomyces Coelicolor
 Mono view
 Stereo pair view
|
|
A full contact list of Copper with other atoms in the Cu binding
site number 2 of Laccase From Streptomyces Coelicolor within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cu412
b:30.3
occ:1.00
|
NE2
|
C:HIS104
|
1.9
|
23.1
|
1.0
|
|
NE2
|
A:HIS289
|
2.0
|
22.3
|
1.0
|
|
NE2
|
C:HIS156
|
2.1
|
31.5
|
1.0
|
|
O
|
A:O501
|
2.4
|
2.0
|
0.4
|
|
CE1
|
C:HIS104
|
2.8
|
25.9
|
1.0
|
|
CE1
|
A:HIS289
|
2.9
|
26.1
|
1.0
|
|
CD2
|
A:HIS289
|
2.9
|
22.5
|
1.0
|
|
CD2
|
C:HIS104
|
3.0
|
25.9
|
1.0
|
|
CE1
|
C:HIS156
|
3.0
|
28.8
|
1.0
|
|
CD2
|
C:HIS156
|
3.0
|
29.1
|
1.0
|
|
CD2
|
C:HIS102
|
3.9
|
35.0
|
1.0
|
|
CU
|
A:CU414
|
3.9
|
52.7
|
0.4
|
|
ND1
|
C:HIS104
|
4.0
|
24.2
|
1.0
|
|
ND1
|
A:HIS289
|
4.0
|
24.7
|
1.0
|
|
CB
|
C:ALA266
|
4.0
|
22.1
|
1.0
|
|
CG
|
A:HIS289
|
4.0
|
23.7
|
1.0
|
|
CG
|
C:HIS104
|
4.1
|
25.2
|
1.0
|
|
ND1
|
C:HIS156
|
4.1
|
28.0
|
1.0
|
|
CG
|
C:HIS156
|
4.2
|
28.6
|
1.0
|
|
NE2
|
C:HIS102
|
4.2
|
37.5
|
1.0
|
|
NE2
|
A:HIS234
|
4.2
|
28.0
|
1.0
|
|
CE1
|
C:HIS154
|
4.2
|
27.5
|
1.0
|
|
CD2
|
A:HIS234
|
4.4
|
26.7
|
1.0
|
|
O
|
C:HOH681
|
4.7
|
46.5
|
1.0
|
|
NE2
|
C:HIS154
|
4.9
|
27.0
|
1.0
|
|
CE1
|
A:HIS234
|
4.9
|
28.3
|
1.0
|
|
CU
|
A:CU413
|
5.0
|
54.3
|
1.0
|
|
CE1
|
C:HIS226
|
5.0
|
27.6
|
1.0
|
|
Copper binding site 3 out
of 12 in 3cg8
Go back to
Copper Binding Sites List in 3cg8
Copper binding site 3 out
of 12 in the Laccase From Streptomyces Coelicolor
 Mono view
 Stereo pair view
|
|
A full contact list of Copper with other atoms in the Cu binding
site number 3 of Laccase From Streptomyces Coelicolor within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cu413
b:54.3
occ:1.00
|
NE2
|
A:HIS236
|
2.1
|
25.7
|
1.0
|
|
NE2
|
A:HIS287
|
2.3
|
33.5
|
1.0
|
|
NE2
|
C:HIS158
|
2.3
|
33.9
|
1.0
|
|
O
|
A:O501
|
2.5
|
2.0
|
0.4
|
|
CE1
|
A:HIS236
|
2.9
|
27.7
|
1.0
|
|
CD2
|
A:HIS236
|
3.2
|
25.4
|
1.0
|
|
CE1
|
A:HIS287
|
3.3
|
32.7
|
1.0
|
|
CD2
|
A:HIS287
|
3.3
|
32.1
|
1.0
|
|
CE1
|
C:HIS158
|
3.3
|
33.8
|
1.0
|
|
CD2
|
C:HIS158
|
3.3
|
32.4
|
1.0
|
|
O
|
C:HOH681
|
3.6
|
46.5
|
1.0
|
|
CU
|
A:CU414
|
3.6
|
52.7
|
0.4
|
|
CD2
|
A:HIS234
|
4.0
|
26.7
|
1.0
|
|
NE2
|
C:HIS102
|
4.0
|
37.5
|
1.0
|
|
ND1
|
A:HIS236
|
4.1
|
27.6
|
1.0
|
|
CG
|
A:HIS236
|
4.2
|
25.5
|
1.0
|
|
NE2
|
A:HIS234
|
4.3
|
28.0
|
1.0
|
|
CD2
|
C:HIS102
|
4.4
|
35.0
|
1.0
|
|
ND1
|
A:HIS287
|
4.4
|
32.3
|
1.0
|
|
CG
|
A:HIS287
|
4.4
|
29.1
|
1.0
|
|
ND1
|
C:HIS158
|
4.4
|
34.4
|
1.0
|
|
CG
|
C:HIS158
|
4.5
|
33.5
|
1.0
|
|
CE1
|
C:HIS102
|
4.6
|
35.9
|
1.0
|
|
SD
|
A:MET285
|
4.7
|
44.3
|
1.0
|
|
NE2
|
A:HIS289
|
4.7
|
22.3
|
1.0
|
|
ND1
|
C:HIS164
|
4.7
|
33.3
|
1.0
|
|
CU
|
A:CU412
|
5.0
|
30.3
|
1.0
|
|
Copper binding site 4 out
of 12 in 3cg8
Go back to
Copper Binding Sites List in 3cg8
Copper binding site 4 out
of 12 in the Laccase From Streptomyces Coelicolor
 Mono view
 Stereo pair view
|
|
A full contact list of Copper with other atoms in the Cu binding
site number 4 of Laccase From Streptomyces Coelicolor within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cu414
b:52.7
occ:0.40
|
NE2
|
C:HIS102
|
1.8
|
37.5
|
1.0
|
|
NE2
|
A:HIS234
|
1.9
|
28.0
|
1.0
|
|
O
|
A:O501
|
2.6
|
2.0
|
0.4
|
|
CE1
|
C:HIS102
|
2.7
|
35.9
|
1.0
|
|
O
|
C:HOH613
|
2.8
|
36.3
|
1.0
|
|
CD2
|
C:HIS102
|
2.9
|
35.0
|
1.0
|
|
CD2
|
A:HIS234
|
2.9
|
26.7
|
1.0
|
|
CE1
|
A:HIS234
|
2.9
|
28.3
|
1.0
|
|
CD2
|
A:HIS236
|
3.1
|
25.4
|
1.0
|
|
NE2
|
A:HIS236
|
3.2
|
25.7
|
1.0
|
|
CU
|
A:CU413
|
3.6
|
54.3
|
1.0
|
|
NE2
|
C:HIS104
|
3.7
|
23.1
|
1.0
|
|
ND1
|
C:HIS102
|
3.8
|
35.0
|
1.0
|
|
CG
|
A:HIS236
|
3.9
|
25.5
|
1.0
|
|
CU
|
A:CU412
|
3.9
|
30.3
|
1.0
|
|
CG
|
C:HIS102
|
4.0
|
32.1
|
1.0
|
|
CE1
|
C:HIS104
|
4.0
|
25.9
|
1.0
|
|
ND1
|
A:HIS234
|
4.0
|
27.2
|
1.0
|
|
CG
|
A:HIS234
|
4.0
|
27.0
|
1.0
|
|
CE1
|
A:HIS236
|
4.0
|
27.7
|
1.0
|
|
CD2
|
C:HIS104
|
4.0
|
25.9
|
1.0
|
|
ND1
|
A:HIS236
|
4.4
|
27.6
|
1.0
|
|
ND1
|
C:HIS104
|
4.5
|
24.2
|
1.0
|
|
CG
|
C:HIS104
|
4.5
|
25.2
|
1.0
|
|
CA
|
A:HIS236
|
4.6
|
27.0
|
1.0
|
|
OH
|
C:TYR108
|
4.6
|
36.2
|
1.0
|
|
O
|
C:VAL103
|
4.7
|
28.5
|
1.0
|
|
CB
|
A:HIS236
|
4.7
|
27.2
|
1.0
|
|
NE2
|
A:HIS289
|
4.8
|
22.3
|
1.0
|
|
N
|
A:HIS236
|
4.8
|
27.7
|
1.0
|
|
NE2
|
A:HIS287
|
5.0
|
33.5
|
1.0
|
|
Copper binding site 5 out
of 12 in 3cg8
Go back to
Copper Binding Sites List in 3cg8
Copper binding site 5 out
of 12 in the Laccase From Streptomyces Coelicolor
 Mono view
 Stereo pair view
|
|
A full contact list of Copper with other atoms in the Cu binding
site number 5 of Laccase From Streptomyces Coelicolor within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cu411
b:28.9
occ:1.00
|
ND1
|
B:HIS293
|
2.0
|
27.8
|
1.0
|
|
ND1
|
B:HIS231
|
2.0
|
27.3
|
1.0
|
|
SG
|
B:CYS288
|
2.2
|
29.4
|
1.0
|
|
CE1
|
B:HIS231
|
2.9
|
26.4
|
1.0
|
|
CG
|
B:HIS293
|
3.0
|
28.2
|
1.0
|
|
CE1
|
B:HIS293
|
3.0
|
29.2
|
1.0
|
|
CG
|
B:HIS231
|
3.0
|
24.2
|
1.0
|
|
CB
|
B:CYS288
|
3.2
|
28.1
|
1.0
|
|
CB
|
B:HIS293
|
3.3
|
29.3
|
1.0
|
|
CB
|
B:HIS231
|
3.4
|
25.6
|
1.0
|
|
SD
|
B:MET298
|
3.4
|
32.4
|
1.0
|
|
CA
|
B:HIS231
|
3.7
|
25.7
|
1.0
|
|
NE2
|
B:HIS231
|
4.0
|
24.6
|
1.0
|
|
NE2
|
B:HIS293
|
4.1
|
25.9
|
1.0
|
|
CD2
|
B:HIS293
|
4.1
|
28.4
|
1.0
|
|
CD2
|
B:HIS231
|
4.1
|
23.4
|
1.0
|
|
CG2
|
B:VAL290
|
4.1
|
19.9
|
1.0
|
|
CE
|
B:MET298
|
4.1
|
29.4
|
1.0
|
|
O
|
B:TYR230
|
4.1
|
24.4
|
1.0
|
|
CB
|
B:VAL290
|
4.2
|
23.8
|
1.0
|
|
N
|
B:THR232
|
4.5
|
27.4
|
1.0
|
|
CA
|
B:CYS288
|
4.7
|
27.6
|
1.0
|
|
N
|
B:HIS231
|
4.7
|
25.2
|
1.0
|
|
C
|
B:HIS231
|
4.7
|
26.2
|
1.0
|
|
CA
|
B:HIS293
|
4.8
|
30.0
|
1.0
|
|
C
|
B:TYR230
|
4.8
|
25.4
|
1.0
|
|
CG
|
B:MET298
|
4.9
|
31.9
|
1.0
|
|
CG1
|
B:VAL290
|
5.0
|
17.1
|
1.0
|
|
CD2
|
B:PHE195
|
5.0
|
29.6
|
1.0
|
|
Copper binding site 6 out
of 12 in 3cg8
Go back to
Copper Binding Sites List in 3cg8
Copper binding site 6 out
of 12 in the Laccase From Streptomyces Coelicolor
 Mono view
 Stereo pair view
|
|
A full contact list of Copper with other atoms in the Cu binding
site number 6 of Laccase From Streptomyces Coelicolor within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cu412
b:28.1
occ:1.00
|
NE2
|
A:HIS104
|
1.9
|
21.4
|
1.0
|
|
NE2
|
A:HIS156
|
2.0
|
21.5
|
1.0
|
|
NE2
|
B:HIS289
|
2.0
|
24.5
|
1.0
|
|
O
|
B:O501
|
2.4
|
8.2
|
0.4
|
|
CE1
|
A:HIS104
|
2.9
|
25.0
|
1.0
|
|
CE1
|
A:HIS156
|
2.9
|
23.7
|
1.0
|
|
CD2
|
A:HIS104
|
3.0
|
23.4
|
1.0
|
|
CD2
|
B:HIS289
|
3.0
|
23.4
|
1.0
|
|
CE1
|
B:HIS289
|
3.0
|
25.1
|
1.0
|
|
CD2
|
A:HIS156
|
3.0
|
22.9
|
1.0
|
|
CD2
|
A:HIS102
|
3.9
|
25.1
|
1.0
|
|
CU
|
B:CU414
|
3.9
|
57.2
|
0.4
|
|
CB
|
A:ALA266
|
4.0
|
22.0
|
1.0
|
|
ND1
|
A:HIS104
|
4.0
|
23.8
|
1.0
|
|
ND1
|
B:HIS289
|
4.1
|
24.4
|
1.0
|
|
CG
|
B:HIS289
|
4.1
|
23.5
|
1.0
|
|
ND1
|
A:HIS156
|
4.1
|
22.4
|
1.0
|
|
CG
|
A:HIS104
|
4.1
|
24.1
|
1.0
|
|
CG
|
A:HIS156
|
4.1
|
23.6
|
1.0
|
|
CE1
|
A:HIS154
|
4.2
|
25.4
|
1.0
|
|
NE2
|
A:HIS102
|
4.2
|
27.8
|
1.0
|
|
NE2
|
B:HIS234
|
4.2
|
29.3
|
1.0
|
|
CD2
|
B:HIS234
|
4.3
|
28.6
|
1.0
|
|
O
|
A:HOH708
|
4.7
|
51.6
|
1.0
|
|
NE2
|
A:HIS154
|
4.8
|
26.8
|
1.0
|
|
CE1
|
A:HIS226
|
4.9
|
25.8
|
1.0
|
|
CE1
|
B:HIS234
|
4.9
|
28.3
|
1.0
|
|
CU
|
B:CU413
|
5.0
|
55.4
|
1.0
|
|
Copper binding site 7 out
of 12 in 3cg8
Go back to
Copper Binding Sites List in 3cg8
Copper binding site 7 out
of 12 in the Laccase From Streptomyces Coelicolor
 Mono view
 Stereo pair view
|
|
A full contact list of Copper with other atoms in the Cu binding
site number 7 of Laccase From Streptomyces Coelicolor within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cu413
b:55.4
occ:1.00
|
NE2
|
B:HIS236
|
2.1
|
24.8
|
1.0
|
|
NE2
|
A:HIS158
|
2.3
|
29.8
|
1.0
|
|
NE2
|
B:HIS287
|
2.4
|
35.0
|
1.0
|
|
O
|
B:O501
|
2.7
|
8.2
|
0.4
|
|
CE1
|
B:HIS236
|
2.9
|
25.6
|
1.0
|
|
CD2
|
A:HIS158
|
3.2
|
29.6
|
1.0
|
|
CD2
|
B:HIS236
|
3.3
|
25.1
|
1.0
|
|
CE1
|
A:HIS158
|
3.3
|
28.6
|
1.0
|
|
CE1
|
B:HIS287
|
3.4
|
33.1
|
1.0
|
|
CD2
|
B:HIS287
|
3.4
|
34.5
|
1.0
|
|
O
|
A:HOH708
|
3.8
|
51.6
|
1.0
|
|
CD2
|
B:HIS234
|
3.9
|
28.6
|
1.0
|
|
CU
|
B:CU414
|
4.0
|
57.2
|
0.4
|
|
NE2
|
A:HIS102
|
4.1
|
27.8
|
1.0
|
|
ND1
|
B:HIS236
|
4.1
|
25.6
|
1.0
|
|
NE2
|
B:HIS234
|
4.2
|
29.3
|
1.0
|
|
CG
|
B:HIS236
|
4.3
|
24.1
|
1.0
|
|
CG
|
A:HIS158
|
4.4
|
29.2
|
1.0
|
|
ND1
|
A:HIS158
|
4.4
|
29.8
|
1.0
|
|
CD2
|
A:HIS102
|
4.4
|
25.1
|
1.0
|
|
ND1
|
B:HIS287
|
4.5
|
33.1
|
1.0
|
|
CG
|
B:HIS287
|
4.5
|
32.8
|
1.0
|
|
CD2
|
A:HIS164
|
4.5
|
35.9
|
1.0
|
|
CE1
|
A:HIS102
|
4.6
|
27.2
|
1.0
|
|
SD
|
B:MET285
|
4.7
|
44.0
|
1.0
|
|
NE2
|
B:HIS289
|
4.7
|
24.5
|
1.0
|
|
CD2
|
B:HIS289
|
5.0
|
23.4
|
1.0
|
|
CU
|
B:CU412
|
5.0
|
28.1
|
1.0
|
|
Copper binding site 8 out
of 12 in 3cg8
Go back to
Copper Binding Sites List in 3cg8
Copper binding site 8 out
of 12 in the Laccase From Streptomyces Coelicolor
 Mono view
 Stereo pair view
|
|
A full contact list of Copper with other atoms in the Cu binding
site number 8 of Laccase From Streptomyces Coelicolor within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cu414
b:57.2
occ:0.40
|
NE2
|
A:HIS102
|
1.8
|
27.8
|
1.0
|
|
NE2
|
B:HIS234
|
1.9
|
29.3
|
1.0
|
|
O
|
B:O501
|
2.6
|
8.2
|
0.4
|
|
CE1
|
A:HIS102
|
2.6
|
27.2
|
1.0
|
|
CE1
|
B:HIS234
|
2.7
|
28.3
|
1.0
|
|
O
|
A:HOH612
|
2.8
|
38.4
|
1.0
|
|
CD2
|
A:HIS102
|
2.9
|
25.1
|
1.0
|
|
CD2
|
B:HIS234
|
3.0
|
28.6
|
1.0
|
|
CD2
|
B:HIS236
|
3.4
|
25.1
|
1.0
|
|
NE2
|
B:HIS236
|
3.5
|
24.8
|
1.0
|
|
NE2
|
A:HIS104
|
3.5
|
21.4
|
1.0
|
|
CD2
|
A:HIS104
|
3.8
|
23.4
|
1.0
|
|
ND1
|
A:HIS102
|
3.8
|
26.1
|
1.0
|
|
CE1
|
A:HIS104
|
3.9
|
25.0
|
1.0
|
|
ND1
|
B:HIS234
|
3.9
|
29.4
|
1.0
|
|
CU
|
B:CU412
|
3.9
|
28.1
|
1.0
|
|
CG
|
A:HIS102
|
4.0
|
25.3
|
1.0
|
|
CU
|
B:CU413
|
4.0
|
55.4
|
1.0
|
|
CG
|
B:HIS236
|
4.0
|
24.1
|
1.0
|
|
CG
|
B:HIS234
|
4.1
|
28.0
|
1.0
|
|
CE1
|
B:HIS236
|
4.1
|
25.6
|
1.0
|
|
CG
|
A:HIS104
|
4.2
|
24.1
|
1.0
|
|
ND1
|
A:HIS104
|
4.3
|
23.8
|
1.0
|
|
O
|
A:VAL103
|
4.3
|
24.5
|
1.0
|
|
ND1
|
B:HIS236
|
4.4
|
25.6
|
1.0
|
|
OH
|
A:TYR108
|
4.5
|
34.0
|
1.0
|
|
CA
|
B:HIS236
|
4.6
|
26.6
|
1.0
|
|
C
|
A:VAL103
|
4.9
|
24.3
|
1.0
|
|
O
|
A:HOH738
|
4.9
|
31.5
|
1.0
|
|
CB
|
B:HIS236
|
4.9
|
26.5
|
1.0
|
|
CA
|
A:HIS104
|
4.9
|
24.9
|
1.0
|
|
N
|
B:HIS236
|
4.9
|
27.1
|
1.0
|
|
Copper binding site 9 out
of 12 in 3cg8
Go back to
Copper Binding Sites List in 3cg8
Copper binding site 9 out
of 12 in the Laccase From Streptomyces Coelicolor
 Mono view
 Stereo pair view
|
|
A full contact list of Copper with other atoms in the Cu binding
site number 9 of Laccase From Streptomyces Coelicolor within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cu411
b:29.6
occ:1.00
|
ND1
|
C:HIS293
|
1.9
|
29.0
|
1.0
|
|
ND1
|
C:HIS231
|
2.0
|
25.4
|
1.0
|
|
SG
|
C:CYS288
|
2.2
|
27.9
|
1.0
|
|
CG
|
C:HIS293
|
2.9
|
30.0
|
1.0
|
|
CE1
|
C:HIS293
|
2.9
|
29.0
|
1.0
|
|
CE1
|
C:HIS231
|
3.0
|
23.8
|
1.0
|
|
CG
|
C:HIS231
|
3.0
|
25.0
|
1.0
|
|
CB
|
C:CYS288
|
3.2
|
27.6
|
1.0
|
|
CB
|
C:HIS293
|
3.2
|
30.2
|
1.0
|
|
CB
|
C:HIS231
|
3.3
|
25.6
|
1.0
|
|
SD
|
C:MET298
|
3.4
|
34.9
|
1.0
|
|
CA
|
C:HIS231
|
3.7
|
26.0
|
1.0
|
|
NE2
|
C:HIS293
|
4.0
|
26.4
|
1.0
|
|
CD2
|
C:HIS293
|
4.0
|
28.8
|
1.0
|
|
O
|
C:TYR230
|
4.1
|
25.8
|
1.0
|
|
NE2
|
C:HIS231
|
4.1
|
21.4
|
1.0
|
|
CG2
|
C:VAL290
|
4.1
|
23.5
|
1.0
|
|
CD2
|
C:HIS231
|
4.1
|
22.4
|
1.0
|
|
CB
|
C:VAL290
|
4.1
|
25.2
|
1.0
|
|
CE
|
C:MET298
|
4.1
|
34.6
|
1.0
|
|
CA
|
C:CYS288
|
4.6
|
27.6
|
1.0
|
|
N
|
C:THR232
|
4.6
|
25.7
|
1.0
|
|
N
|
C:HIS231
|
4.7
|
26.3
|
1.0
|
|
C
|
C:HIS231
|
4.7
|
25.6
|
1.0
|
|
CA
|
C:HIS293
|
4.8
|
30.6
|
1.0
|
|
C
|
C:TYR230
|
4.8
|
26.3
|
1.0
|
|
CG
|
C:MET298
|
4.9
|
34.9
|
1.0
|
|
CG1
|
C:VAL290
|
4.9
|
20.5
|
1.0
|
|
CD2
|
C:PHE195
|
4.9
|
29.6
|
1.0
|
|
Copper binding site 10 out
of 12 in 3cg8
Go back to
Copper Binding Sites List in 3cg8
Copper binding site 10 out
of 12 in the Laccase From Streptomyces Coelicolor
 Mono view
 Stereo pair view
|
|
A full contact list of Copper with other atoms in the Cu binding
site number 10 of Laccase From Streptomyces Coelicolor within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cu412
b:31.2
occ:1.00
|
NE2
|
B:HIS104
|
1.9
|
22.4
|
1.0
|
|
NE2
|
C:HIS289
|
2.1
|
24.8
|
1.0
|
|
NE2
|
B:HIS156
|
2.1
|
29.5
|
1.0
|
|
O
|
C:O501
|
2.7
|
2.8
|
0.4
|
|
CE1
|
B:HIS104
|
2.8
|
27.1
|
1.0
|
|
CD2
|
B:HIS104
|
3.0
|
26.2
|
1.0
|
|
CD2
|
C:HIS289
|
3.0
|
24.3
|
1.0
|
|
CE1
|
C:HIS289
|
3.1
|
26.3
|
1.0
|
|
CE1
|
B:HIS156
|
3.1
|
29.6
|
1.0
|
|
CD2
|
B:HIS156
|
3.1
|
28.2
|
1.0
|
|
CU
|
C:CU414
|
3.3
|
63.6
|
0.4
|
|
CD2
|
B:HIS102
|
3.9
|
33.3
|
1.0
|
|
ND1
|
B:HIS104
|
4.0
|
26.1
|
1.0
|
|
CB
|
B:ALA266
|
4.0
|
24.8
|
1.0
|
|
CG
|
B:HIS104
|
4.1
|
26.0
|
1.0
|
|
ND1
|
C:HIS289
|
4.1
|
23.6
|
1.0
|
|
CG
|
C:HIS289
|
4.2
|
24.5
|
1.0
|
|
ND1
|
B:HIS156
|
4.2
|
27.0
|
1.0
|
|
CE1
|
B:HIS154
|
4.2
|
26.1
|
1.0
|
|
CG
|
B:HIS156
|
4.2
|
27.8
|
1.0
|
|
NE2
|
C:HIS234
|
4.3
|
30.1
|
1.0
|
|
CD2
|
C:HIS234
|
4.4
|
28.0
|
1.0
|
|
NE2
|
B:HIS102
|
4.4
|
35.3
|
1.0
|
|
O
|
B:HOH702
|
4.5
|
49.0
|
1.0
|
|
NE2
|
B:HIS154
|
4.9
|
26.0
|
1.0
|
|
CE1
|
C:HIS234
|
4.9
|
29.6
|
1.0
|
|
CE1
|
B:HIS226
|
5.0
|
25.1
|
1.0
|
|
Copper binding site 11 out
of 12 in 3cg8
Go back to
Copper Binding Sites List in 3cg8
Copper binding site 11 out
of 12 in the Laccase From Streptomyces Coelicolor
 Mono view
 Stereo pair view
|
|
A full contact list of Copper with other atoms in the Cu binding
site number 11 of Laccase From Streptomyces Coelicolor within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cu413
b:56.3
occ:1.00
|
NE2
|
C:HIS236
|
2.1
|
26.6
|
1.0
|
|
NE2
|
B:HIS158
|
2.2
|
36.0
|
1.0
|
|
NE2
|
C:HIS287
|
2.4
|
35.4
|
1.0
|
|
O
|
C:O501
|
2.4
|
2.8
|
0.4
|
|
CE1
|
C:HIS236
|
2.9
|
29.2
|
1.0
|
|
CD2
|
B:HIS158
|
3.2
|
34.4
|
1.0
|
|
CE1
|
B:HIS158
|
3.2
|
35.1
|
1.0
|
|
CD2
|
C:HIS236
|
3.3
|
26.7
|
1.0
|
|
CE1
|
C:HIS287
|
3.3
|
34.4
|
1.0
|
|
CD2
|
C:HIS287
|
3.3
|
33.2
|
1.0
|
|
O
|
B:HOH702
|
3.5
|
49.0
|
1.0
|
|
CU
|
C:CU414
|
3.6
|
63.6
|
0.4
|
|
CD2
|
C:HIS234
|
4.0
|
28.0
|
1.0
|
|
ND1
|
C:HIS236
|
4.1
|
27.1
|
1.0
|
|
NE2
|
B:HIS102
|
4.2
|
35.3
|
1.0
|
|
CG
|
C:HIS236
|
4.3
|
25.5
|
1.0
|
|
NE2
|
C:HIS234
|
4.3
|
30.1
|
1.0
|
|
CG
|
B:HIS158
|
4.3
|
32.8
|
1.0
|
|
ND1
|
B:HIS158
|
4.3
|
33.7
|
1.0
|
|
ND1
|
C:HIS287
|
4.4
|
34.1
|
1.0
|
|
CG
|
C:HIS287
|
4.4
|
31.3
|
1.0
|
|
CD2
|
B:HIS102
|
4.5
|
33.3
|
1.0
|
|
SD
|
C:MET285
|
4.5
|
44.9
|
1.0
|
|
ND1
|
B:HIS164
|
4.6
|
35.4
|
1.0
|
|
CE1
|
B:HIS102
|
4.7
|
33.2
|
1.0
|
|
NE2
|
C:HIS289
|
4.8
|
24.8
|
1.0
|
|
Copper binding site 12 out
of 12 in 3cg8
Go back to
Copper Binding Sites List in 3cg8
Copper binding site 12 out
of 12 in the Laccase From Streptomyces Coelicolor
 Mono view
 Stereo pair view
|
|
A full contact list of Copper with other atoms in the Cu binding
site number 12 of Laccase From Streptomyces Coelicolor within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cu414
b:63.6
occ:0.40
|
NE2
|
B:HIS102
|
1.9
|
35.3
|
1.0
|
|
NE2
|
C:HIS234
|
2.0
|
30.1
|
1.0
|
|
CD2
|
B:HIS102
|
2.6
|
33.3
|
1.0
|
|
O
|
C:O501
|
2.7
|
2.8
|
0.4
|
|
O
|
B:HOH613
|
2.8
|
44.4
|
1.0
|
|
CD2
|
C:HIS234
|
2.9
|
28.0
|
1.0
|
|
CE1
|
C:HIS234
|
3.1
|
29.6
|
1.0
|
|
CE1
|
B:HIS102
|
3.1
|
33.2
|
1.0
|
|
NE2
|
B:HIS104
|
3.2
|
22.4
|
1.0
|
|
CU
|
C:CU412
|
3.3
|
31.2
|
1.0
|
|
NE2
|
C:HIS236
|
3.5
|
26.6
|
1.0
|
|
CE1
|
B:HIS104
|
3.6
|
27.1
|
1.0
|
|
CD2
|
B:HIS104
|
3.6
|
26.2
|
1.0
|
|
CU
|
C:CU413
|
3.6
|
56.3
|
1.0
|
|
CD2
|
C:HIS236
|
3.7
|
26.7
|
1.0
|
|
CG
|
B:HIS102
|
3.9
|
30.7
|
1.0
|
|
CG
|
C:HIS234
|
4.0
|
28.0
|
1.0
|
|
ND1
|
C:HIS234
|
4.1
|
29.6
|
1.0
|
|
ND1
|
B:HIS102
|
4.1
|
30.8
|
1.0
|
|
ND1
|
B:HIS104
|
4.2
|
26.1
|
1.0
|
|
CG
|
B:HIS104
|
4.2
|
26.0
|
1.0
|
|
CE1
|
C:HIS236
|
4.3
|
29.2
|
1.0
|
|
NE2
|
C:HIS289
|
4.4
|
24.8
|
1.0
|
|
CG
|
C:HIS236
|
4.5
|
25.5
|
1.0
|
|
NE2
|
B:HIS156
|
4.5
|
29.5
|
1.0
|
|
CD2
|
C:HIS289
|
4.6
|
24.3
|
1.0
|
|
ND1
|
C:HIS236
|
4.7
|
27.1
|
1.0
|
|
CD2
|
B:HIS158
|
4.8
|
34.4
|
1.0
|
|
O
|
B:VAL103
|
4.9
|
28.2
|
1.0
|
|
NE2
|
C:HIS287
|
4.9
|
35.4
|
1.0
|
|
NE2
|
B:HIS158
|
4.9
|
36.0
|
1.0
|
|
Reference:
T.Skalova,
J.Dohnalek,
L.H.Ostergaard,
P.R.Ostergaard,
P.Kolenko,
J.Duskova,
A.Stepankova,
J.Hasek.
The Structure of the Small Laccase From Streptomyces Coelicolor Reveals A Link Between Laccases and Nitrite Reductases. J.Mol.Biol. V. 385 1165 2009.
ISSN: ISSN 0022-2836
PubMed: 19063896
DOI: 10.1016/J.JMB.2008.11.024
Page generated: Wed Oct 28 14:23:34 2020
|
