Copper in PDB 3azu: X-Ray Crystal Structure of the Two Site-Specific Mutants HIS35GLN and HIS35LEU of Azurin From Pseudomonas Aeruginosa
Protein crystallography data
The structure of X-Ray Crystal Structure of the Two Site-Specific Mutants HIS35GLN and HIS35LEU of Azurin From Pseudomonas Aeruginosa, PDB code: 3azu
was solved by
A.Messerschmidt,
H.Nar,
R.Huber,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
N/A /
2.10
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
109.740,
99.150,
47.820,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
16.3 /
n/a
|
Copper Binding Sites:
The binding sites of Copper atom in the X-Ray Crystal Structure of the Two Site-Specific Mutants HIS35GLN and HIS35LEU of Azurin From Pseudomonas Aeruginosa
(pdb code 3azu). This binding sites where shown within
5.0 Angstroms radius around Copper atom.
In total 4 binding sites of Copper where determined in the
X-Ray Crystal Structure of the Two Site-Specific Mutants HIS35GLN and HIS35LEU of Azurin From Pseudomonas Aeruginosa, PDB code: 3azu:
Jump to Copper binding site number:
1;
2;
3;
4;
Copper binding site 1 out
of 4 in 3azu
Go back to
Copper Binding Sites List in 3azu
Copper binding site 1 out
of 4 in the X-Ray Crystal Structure of the Two Site-Specific Mutants HIS35GLN and HIS35LEU of Azurin From Pseudomonas Aeruginosa
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 1 of X-Ray Crystal Structure of the Two Site-Specific Mutants HIS35GLN and HIS35LEU of Azurin From Pseudomonas Aeruginosa within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cu129
b:21.9
occ:1.00
|
ND1
|
A:HIS46
|
2.0
|
29.8
|
1.0
|
SG
|
A:CYS112
|
2.1
|
8.9
|
1.0
|
ND1
|
A:HIS117
|
2.1
|
17.5
|
1.0
|
CE1
|
A:HIS46
|
2.9
|
16.8
|
1.0
|
SD
|
A:MET121
|
3.0
|
18.0
|
1.0
|
CG
|
A:HIS46
|
3.0
|
27.7
|
1.0
|
CG
|
A:HIS117
|
3.0
|
35.6
|
1.0
|
O
|
A:GLY45
|
3.0
|
7.3
|
1.0
|
CE1
|
A:HIS117
|
3.1
|
9.9
|
1.0
|
CB
|
A:CYS112
|
3.3
|
2.0
|
1.0
|
CB
|
A:HIS117
|
3.3
|
5.5
|
1.0
|
CB
|
A:HIS46
|
3.4
|
11.4
|
1.0
|
CA
|
A:HIS46
|
3.4
|
10.6
|
1.0
|
C
|
A:GLY45
|
3.9
|
4.1
|
1.0
|
CE
|
A:MET121
|
4.0
|
2.0
|
1.0
|
NE2
|
A:HIS46
|
4.0
|
15.6
|
1.0
|
CB
|
A:PHE114
|
4.1
|
2.0
|
1.0
|
CD2
|
A:HIS46
|
4.1
|
10.2
|
1.0
|
N
|
A:HIS46
|
4.1
|
8.8
|
1.0
|
NE2
|
A:HIS117
|
4.2
|
30.4
|
1.0
|
CD2
|
A:HIS117
|
4.2
|
30.0
|
1.0
|
CG
|
A:MET121
|
4.5
|
5.5
|
1.0
|
CA
|
A:CYS112
|
4.6
|
33.8
|
1.0
|
C
|
A:HIS46
|
4.7
|
5.5
|
1.0
|
N
|
A:ASN47
|
4.8
|
16.3
|
1.0
|
CA
|
A:HIS117
|
4.8
|
2.0
|
1.0
|
O
|
A:MET44
|
4.9
|
9.6
|
1.0
|
CG
|
A:PHE114
|
4.9
|
18.8
|
1.0
|
CB
|
A:MET121
|
5.0
|
11.6
|
1.0
|
N
|
A:PHE114
|
5.0
|
12.7
|
1.0
|
|
Copper binding site 2 out
of 4 in 3azu
Go back to
Copper Binding Sites List in 3azu
Copper binding site 2 out
of 4 in the X-Ray Crystal Structure of the Two Site-Specific Mutants HIS35GLN and HIS35LEU of Azurin From Pseudomonas Aeruginosa
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 2 of X-Ray Crystal Structure of the Two Site-Specific Mutants HIS35GLN and HIS35LEU of Azurin From Pseudomonas Aeruginosa within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cu129
b:11.3
occ:1.00
|
SG
|
B:CYS112
|
2.0
|
4.7
|
1.0
|
ND1
|
B:HIS46
|
2.0
|
2.0
|
1.0
|
ND1
|
B:HIS117
|
2.0
|
21.0
|
1.0
|
CE1
|
B:HIS117
|
3.0
|
8.6
|
1.0
|
CE1
|
B:HIS46
|
3.0
|
34.4
|
1.0
|
CG
|
B:HIS117
|
3.0
|
2.0
|
1.0
|
CG
|
B:HIS46
|
3.0
|
2.0
|
1.0
|
O
|
B:GLY45
|
3.1
|
19.4
|
1.0
|
SD
|
B:MET121
|
3.2
|
14.8
|
1.0
|
CB
|
B:CYS112
|
3.2
|
2.0
|
1.0
|
CA
|
B:HIS46
|
3.2
|
34.5
|
1.0
|
CB
|
B:HIS117
|
3.4
|
12.8
|
1.0
|
CB
|
B:HIS46
|
3.4
|
3.5
|
1.0
|
C
|
B:GLY45
|
3.9
|
29.6
|
1.0
|
N
|
B:HIS46
|
4.0
|
8.0
|
1.0
|
CB
|
B:PHE114
|
4.0
|
2.0
|
1.0
|
CE
|
B:MET121
|
4.1
|
2.0
|
1.0
|
NE2
|
B:HIS117
|
4.1
|
28.1
|
1.0
|
NE2
|
B:HIS46
|
4.2
|
17.9
|
1.0
|
CD2
|
B:HIS117
|
4.2
|
16.1
|
1.0
|
CD2
|
B:HIS46
|
4.2
|
22.0
|
1.0
|
C
|
B:HIS46
|
4.4
|
2.0
|
1.0
|
N
|
B:ASN47
|
4.5
|
23.2
|
1.0
|
CA
|
B:CYS112
|
4.6
|
18.0
|
1.0
|
CG
|
B:MET121
|
4.7
|
2.0
|
1.0
|
CG
|
B:PHE114
|
4.7
|
11.3
|
1.0
|
O
|
B:MET44
|
4.9
|
15.7
|
1.0
|
CA
|
B:HIS117
|
4.9
|
7.6
|
1.0
|
C
|
B:CYS112
|
5.0
|
5.5
|
1.0
|
N
|
B:PHE114
|
5.0
|
14.0
|
1.0
|
|
Copper binding site 3 out
of 4 in 3azu
Go back to
Copper Binding Sites List in 3azu
Copper binding site 3 out
of 4 in the X-Ray Crystal Structure of the Two Site-Specific Mutants HIS35GLN and HIS35LEU of Azurin From Pseudomonas Aeruginosa
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 3 of X-Ray Crystal Structure of the Two Site-Specific Mutants HIS35GLN and HIS35LEU of Azurin From Pseudomonas Aeruginosa within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cu129
b:17.2
occ:1.00
|
ND1
|
C:HIS117
|
2.0
|
22.4
|
1.0
|
ND1
|
C:HIS46
|
2.0
|
6.5
|
1.0
|
SG
|
C:CYS112
|
2.1
|
7.2
|
1.0
|
CG
|
C:HIS117
|
3.0
|
2.9
|
1.0
|
CE1
|
C:HIS117
|
3.0
|
2.0
|
1.0
|
CE1
|
C:HIS46
|
3.0
|
5.8
|
1.0
|
CG
|
C:HIS46
|
3.0
|
7.1
|
1.0
|
O
|
C:GLY45
|
3.0
|
7.7
|
1.0
|
SD
|
C:MET121
|
3.1
|
12.5
|
1.0
|
CB
|
C:CYS112
|
3.2
|
3.4
|
1.0
|
CA
|
C:HIS46
|
3.4
|
2.0
|
1.0
|
CB
|
C:HIS117
|
3.4
|
13.6
|
1.0
|
CB
|
C:HIS46
|
3.4
|
2.1
|
1.0
|
CE
|
C:MET121
|
3.8
|
2.0
|
1.0
|
C
|
C:GLY45
|
3.9
|
6.9
|
1.0
|
CB
|
C:PHE114
|
4.0
|
12.5
|
1.0
|
N
|
C:HIS46
|
4.0
|
5.2
|
1.0
|
NE2
|
C:HIS117
|
4.1
|
9.0
|
1.0
|
NE2
|
C:HIS46
|
4.1
|
2.1
|
1.0
|
CD2
|
C:HIS117
|
4.2
|
12.5
|
1.0
|
CD2
|
C:HIS46
|
4.2
|
7.3
|
1.0
|
C
|
C:HIS46
|
4.5
|
23.1
|
1.0
|
CG
|
C:MET121
|
4.5
|
12.0
|
1.0
|
CA
|
C:CYS112
|
4.5
|
2.0
|
1.0
|
N
|
C:ASN47
|
4.6
|
14.2
|
1.0
|
CG
|
C:PHE114
|
4.7
|
8.6
|
1.0
|
CB
|
C:MET121
|
4.9
|
11.8
|
1.0
|
CA
|
C:HIS117
|
4.9
|
2.0
|
1.0
|
C
|
C:CYS112
|
4.9
|
10.1
|
1.0
|
N
|
C:PHE114
|
4.9
|
5.1
|
1.0
|
|
Copper binding site 4 out
of 4 in 3azu
Go back to
Copper Binding Sites List in 3azu
Copper binding site 4 out
of 4 in the X-Ray Crystal Structure of the Two Site-Specific Mutants HIS35GLN and HIS35LEU of Azurin From Pseudomonas Aeruginosa
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 4 of X-Ray Crystal Structure of the Two Site-Specific Mutants HIS35GLN and HIS35LEU of Azurin From Pseudomonas Aeruginosa within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cu129
b:17.6
occ:1.00
|
ND1
|
D:HIS46
|
2.0
|
5.0
|
1.0
|
SG
|
D:CYS112
|
2.0
|
9.3
|
1.0
|
ND1
|
D:HIS117
|
2.0
|
25.3
|
1.0
|
SD
|
D:MET121
|
2.9
|
16.8
|
1.0
|
CE1
|
D:HIS117
|
3.0
|
10.5
|
1.0
|
CE1
|
D:HIS46
|
3.0
|
69.5
|
1.0
|
CG
|
D:HIS46
|
3.0
|
41.2
|
1.0
|
CG
|
D:HIS117
|
3.0
|
10.5
|
1.0
|
O
|
D:GLY45
|
3.2
|
20.3
|
1.0
|
CB
|
D:CYS112
|
3.3
|
12.1
|
1.0
|
CA
|
D:HIS46
|
3.4
|
10.5
|
1.0
|
CB
|
D:HIS117
|
3.4
|
4.7
|
1.0
|
CB
|
D:HIS46
|
3.4
|
2.0
|
1.0
|
CE
|
D:MET121
|
3.9
|
2.4
|
1.0
|
CB
|
D:PHE114
|
3.9
|
2.7
|
1.0
|
C
|
D:GLY45
|
4.0
|
13.8
|
1.0
|
NE2
|
D:HIS117
|
4.1
|
14.7
|
1.0
|
NE2
|
D:HIS46
|
4.1
|
30.8
|
1.0
|
N
|
D:HIS46
|
4.1
|
5.1
|
1.0
|
CD2
|
D:HIS46
|
4.2
|
27.1
|
1.0
|
CD2
|
D:HIS117
|
4.2
|
18.2
|
1.0
|
CG
|
D:MET121
|
4.5
|
6.5
|
1.0
|
C
|
D:HIS46
|
4.5
|
6.8
|
1.0
|
N
|
D:ASN47
|
4.6
|
9.4
|
1.0
|
CA
|
D:CYS112
|
4.6
|
20.1
|
1.0
|
CG
|
D:PHE114
|
4.7
|
14.3
|
1.0
|
N
|
D:PHE114
|
4.8
|
13.6
|
1.0
|
O
|
D:MET44
|
4.9
|
20.2
|
1.0
|
CA
|
D:HIS117
|
4.9
|
29.0
|
1.0
|
CB
|
D:MET121
|
4.9
|
22.8
|
1.0
|
CA
|
D:PHE114
|
5.0
|
14.2
|
1.0
|
|
Reference:
H.Nar,
A.Messerschmidt,
R.Huber,
M.Van De Kamp,
G.W.Canters.
X-Ray Crystal Structure of the Two Site-Specific Mutants HIS35GLN and HIS35LEU of Azurin From Pseudomonas Aeruginosa. J.Mol.Biol. V. 218 427 1991.
ISSN: ISSN 0022-2836
PubMed: 1901363
DOI: 10.1016/0022-2836(91)90723-J
Page generated: Wed Jul 31 00:42:19 2024
|