Atomistry » Copper » PDB 2z7y-3aws » 3aw5
Atomistry »
  Copper »
    PDB 2z7y-3aws »
      3aw5 »

Copper in PDB 3aw5: Structure of A Multicopper Oxidase From the Hyperthermophilic Archaeon Pyrobaculum Aerophilum

Enzymatic activity of Structure of A Multicopper Oxidase From the Hyperthermophilic Archaeon Pyrobaculum Aerophilum

All present enzymatic activity of Structure of A Multicopper Oxidase From the Hyperthermophilic Archaeon Pyrobaculum Aerophilum:
1.10.3.2;

Protein crystallography data

The structure of Structure of A Multicopper Oxidase From the Hyperthermophilic Archaeon Pyrobaculum Aerophilum, PDB code: 3aw5 was solved by H.Sakuraba, T.Ohshima, K.Yoneda, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 26.32 / 2.00
Space group I 41
Cell size a, b, c (Å), α, β, γ (°) 103.950, 103.950, 122.083, 90.00, 90.00, 90.00
R / Rfree (%) 20.2 / 22.4

Copper Binding Sites:

The binding sites of Copper atom in the Structure of A Multicopper Oxidase From the Hyperthermophilic Archaeon Pyrobaculum Aerophilum (pdb code 3aw5). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 4 binding sites of Copper where determined in the Structure of A Multicopper Oxidase From the Hyperthermophilic Archaeon Pyrobaculum Aerophilum, PDB code: 3aw5:
Jump to Copper binding site number: 1; 2; 3; 4;

Copper binding site 1 out of 4 in 3aw5

Go back to Copper Binding Sites List in 3aw5
Copper binding site 1 out of 4 in the Structure of A Multicopper Oxidase From the Hyperthermophilic Archaeon Pyrobaculum Aerophilum


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Structure of A Multicopper Oxidase From the Hyperthermophilic Archaeon Pyrobaculum Aerophilum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu701

b:27.6
occ:1.00
 ND1 A:HIS391 2.1 21.2 1.0
ND1 A:HIS465 2.1 19.9 1.0
SG A:CYS460 2.2 22.6 1.0
CE1 A:HIS391 3.0 23.9 1.0
CE1 A:HIS465 3.0 20.9 1.0
CB A:CYS460 3.1 21.9 1.0
CG A:HIS391 3.1 23.6 1.0
CG A:HIS465 3.2 19.0 1.0
SD A:MET470 3.5 24.0 1.0
CB A:HIS391 3.5 18.9 1.0
CB A:HIS465 3.5 20.4 1.0
CB A:ASN462 3.8 17.5 1.0
CA A:HIS391 3.9 18.3 1.0
NE2 A:HIS391 4.1 24.5 1.0
NE2 A:HIS465 4.2 19.6 1.0
CE A:MET470 4.2 20.5 1.0
CD2 A:HIS391 4.2 24.1 1.0
CD2 A:HIS465 4.3 19.6 1.0
CD A:PRO392 4.5 20.6 1.0
CA A:CYS460 4.5 18.9 1.0
O A:PRO390 4.6 21.1 1.0
CG A:ASN462 4.6 20.1 1.0
ND2 A:ASN462 4.8 15.9 1.0
C A:HIS391 4.9 19.0 1.0
N A:ASN462 4.9 17.4 1.0
N A:PRO392 4.9 19.8 1.0
N A:HIS391 5.0 19.2 1.0

Copper binding site 2 out of 4 in 3aw5

Go back to Copper Binding Sites List in 3aw5
Copper binding site 2 out of 4 in the Structure of A Multicopper Oxidase From the Hyperthermophilic Archaeon Pyrobaculum Aerophilum


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Structure of A Multicopper Oxidase From the Hyperthermophilic Archaeon Pyrobaculum Aerophilum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu703

b:40.9
occ:1.00
 NE2 A:HIS92 1.9 27.2 1.0
NE2 A:HIS394 1.9 22.4 1.0
CD2 A:HIS394 2.7 23.4 1.0
CD2 A:HIS92 2.8 26.4 1.0
CE1 A:HIS92 2.9 22.9 1.0
O A:HOH1017 2.9 23.7 1.0
CE1 A:HIS394 3.0 22.4 1.0
CD2 A:HIS396 3.2 21.5 1.0
NE2 A:HIS396 3.2 24.8 1.0
O1 A:C2O702 3.4 26.5 1.0
CU2 A:C2O702 3.5 37.2 1.0
ND1 A:HIS94 3.6 24.8 1.0
CG A:HIS396 3.7 22.2 1.0
CE1 A:HIS396 3.7 23.2 1.0
CA A:HIS94 3.8 22.1 1.0
CG A:HIS94 3.9 20.5 1.0
CG A:HIS394 3.9 21.8 1.0
CG A:HIS92 4.0 23.1 1.0
ND1 A:HIS92 4.0 26.6 1.0
ND1 A:HIS396 4.0 22.1 1.0
ND1 A:HIS394 4.0 19.3 1.0
CU3 A:C2O702 4.0 28.7 1.0
CE1 A:HIS94 4.0 16.8 1.0
N A:GLY95 4.1 22.1 1.0
CB A:HIS94 4.1 23.6 1.0
CD2 A:HIS94 4.5 18.9 1.0
C A:HIS94 4.5 22.7 1.0
CA A:HIS396 4.6 23.4 1.0
NE2 A:HIS94 4.6 20.5 1.0
CB A:HIS396 4.6 22.5 1.0
N A:HIS94 4.7 23.4 1.0
O A:HOH1068 4.9 28.9 1.0
NE2 A:HIS459 5.0 26.2 1.0
N A:HIS396 5.0 21.2 1.0

Copper binding site 3 out of 4 in 3aw5

Go back to Copper Binding Sites List in 3aw5
Copper binding site 3 out of 4 in the Structure of A Multicopper Oxidase From the Hyperthermophilic Archaeon Pyrobaculum Aerophilum


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Structure of A Multicopper Oxidase From the Hyperthermophilic Archaeon Pyrobaculum Aerophilum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu702

b:37.2
occ:1.00
 CU2 A:C2O702 0.0 37.2 1.0
NE2 A:HIS134 2.1 32.2 1.0
O1 A:C2O702 2.2 26.5 1.0
NE2 A:HIS396 2.2 24.8 1.0
NE2 A:HIS459 2.2 26.2 1.0
CE1 A:HIS396 2.9 23.2 1.0
CD2 A:HIS134 3.0 27.3 1.0
CE1 A:HIS459 3.0 23.6 1.0
CE1 A:HIS134 3.2 28.2 1.0
CD2 A:HIS459 3.3 21.1 1.0
CD2 A:HIS396 3.3 21.5 1.0
CU A:CU703 3.5 40.9 1.0
CD2 A:HIS394 3.7 23.4 1.0
CD2 A:HIS92 3.8 26.4 1.0
NE2 A:HIS92 4.0 27.2 1.0
ND1 A:HIS396 4.1 22.1 1.0
CG A:HIS134 4.2 27.6 1.0
ND1 A:HIS459 4.2 22.6 1.0
NE2 A:HIS394 4.2 22.4 1.0
ND1 A:HIS134 4.3 32.0 1.0
CU3 A:C2O702 4.3 28.7 1.0
CG A:HIS396 4.3 22.2 1.0
CG A:HIS459 4.3 23.3 1.0
CG A:HIS92 4.6 23.1 1.0
OE1 A:GLU466 4.6 33.9 1.0
CE1 A:HIS132 4.7 19.6 1.0
CD2 A:HIS461 4.7 23.3 1.0
CE1 A:HIS92 4.8 22.9 1.0
NE2 A:HIS461 4.8 21.8 1.0
OE2 A:GLU466 4.8 37.0 1.0
CG A:HIS394 4.9 21.8 1.0
CD A:GLU466 5.0 32.5 1.0

Copper binding site 4 out of 4 in 3aw5

Go back to Copper Binding Sites List in 3aw5
Copper binding site 4 out of 4 in the Structure of A Multicopper Oxidase From the Hyperthermophilic Archaeon Pyrobaculum Aerophilum


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Structure of A Multicopper Oxidase From the Hyperthermophilic Archaeon Pyrobaculum Aerophilum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu702

b:28.7
occ:1.00
 CU3 A:C2O702 0.0 28.7 1.0
NE2 A:HIS132 2.1 25.6 1.0
ND1 A:HIS94 2.2 24.8 1.0
O1 A:C2O702 2.2 26.5 1.0
NE2 A:HIS461 2.3 21.8 1.0
CE1 A:HIS132 3.0 19.6 1.0
CE1 A:HIS94 3.1 16.8 1.0
CD2 A:HIS132 3.1 21.7 1.0
CG A:HIS94 3.2 20.5 1.0
CD2 A:HIS461 3.2 23.3 1.0
CE1 A:HIS461 3.3 25.9 1.0
CB A:HIS94 3.5 23.6 1.0
CD2 A:HIS92 3.9 26.4 1.0
CU A:CU703 4.0 40.9 1.0
ND1 A:HIS132 4.1 25.0 1.0
NE2 A:HIS94 4.2 20.5 1.0
CG A:HIS132 4.2 20.7 1.0
CD2 A:HIS94 4.3 18.9 1.0
CU2 A:C2O702 4.3 37.2 1.0
CG A:HIS461 4.4 24.7 1.0
ND1 A:HIS461 4.4 21.4 1.0
NE2 A:HIS92 4.4 27.2 1.0
CD2 A:HIS394 4.5 23.4 1.0
NE2 A:HIS394 4.5 22.4 1.0
CB A:ALA269 4.5 22.2 1.0
CA A:HIS94 4.6 22.1 1.0
CD1 A:LEU130 4.7 29.4 1.0

Reference:

H.Sakuraba, K.Koga, K.Yoneda, Y.Kashima, T.Ohshima. Structure of A Multicopper Oxidase From the Hyperthermophilic Archaeon Pyrobaculum Aerophilum Acta Crystallogr.,Sect.F V. 67 753 2011.
ISSN: ESSN 1744-3091
PubMed: 21795787
DOI: 10.1107/S1744309111018173
Page generated: Wed Jul 31 00:39:54 2024

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy