Atomistry » Copper » PDB 2z7y-3aws » 3ala
Atomistry »
  Copper »
    PDB 2z7y-3aws »
      3ala »

Copper in PDB 3ala: Crystal Structure of Vascular Adhesion Protein-1 in Space Group C2

Enzymatic activity of Crystal Structure of Vascular Adhesion Protein-1 in Space Group C2

All present enzymatic activity of Crystal Structure of Vascular Adhesion Protein-1 in Space Group C2:
1.4.3.21;

Protein crystallography data

The structure of Crystal Structure of Vascular Adhesion Protein-1 in Space Group C2, PDB code: 3ala was solved by K.E.Ernberg, A.P.Mcgrath, J.M.Guss, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 110.40 / 2.90
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 394.468, 115.826, 179.286, 90.00, 112.34, 90.00
R / Rfree (%) 25 / 28.6

Other elements in 3ala:

The structure of Crystal Structure of Vascular Adhesion Protein-1 in Space Group C2 also contains other interesting chemical elements:

Calcium (Ca) 14 atoms

Copper Binding Sites:

The binding sites of Copper atom in the Crystal Structure of Vascular Adhesion Protein-1 in Space Group C2 (pdb code 3ala). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 7 binding sites of Copper where determined in the Crystal Structure of Vascular Adhesion Protein-1 in Space Group C2, PDB code: 3ala:
Jump to Copper binding site number: 1; 2; 3; 4; 5; 6; 7;

Copper binding site 1 out of 7 in 3ala

Go back to Copper Binding Sites List in 3ala
Copper binding site 1 out of 7 in the Crystal Structure of Vascular Adhesion Protein-1 in Space Group C2


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of Vascular Adhesion Protein-1 in Space Group C2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu1762

b:43.5
occ:1.00
 NE2 A:HIS520 2.1 34.5 1.0
ND1 A:HIS684 2.2 35.6 1.0
NE2 A:HIS522 2.4 36.2 1.0
CE1 A:HIS520 2.9 36.5 1.0
CD2 A:HIS522 3.0 38.5 1.0
CG A:HIS684 3.1 37.4 1.0
CD2 A:HIS520 3.1 36.5 1.0
CE1 A:HIS684 3.2 38.6 1.0
CB A:HIS684 3.3 38.5 1.0
CE1 A:HIS522 3.6 39.9 1.0
ND1 A:HIS520 4.1 34.9 1.0
CG A:HIS520 4.2 34.6 1.0
CG A:HIS522 4.3 38.4 1.0
CD2 A:HIS684 4.3 38.5 1.0
NE2 A:HIS684 4.3 37.6 1.0
ND1 A:HIS522 4.5 39.1 1.0
O2 A:TPQ471 4.7 58.3 1.0
CA A:HIS684 4.8 38.3 1.0
CE1 A:PHE682 4.9 40.3 1.0

Copper binding site 2 out of 7 in 3ala

Go back to Copper Binding Sites List in 3ala
Copper binding site 2 out of 7 in the Crystal Structure of Vascular Adhesion Protein-1 in Space Group C2


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Crystal Structure of Vascular Adhesion Protein-1 in Space Group C2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu1762

b:49.5
occ:1.00
 NE2 B:HIS522 2.2 36.2 1.0
ND1 B:HIS684 2.3 35.7 1.0
NE2 B:HIS520 2.4 34.8 1.0
CD2 B:HIS522 2.8 38.5 1.0
O B:HOH764 3.0 43.1 1.0
CG B:HIS684 3.1 37.3 1.0
CE1 B:HIS520 3.3 36.8 1.0
CB B:HIS684 3.3 38.3 1.0
CE1 B:HIS684 3.3 38.6 1.0
CD2 B:HIS520 3.4 36.5 1.0
CE1 B:HIS522 3.5 39.9 1.0
CG B:HIS522 4.1 38.3 1.0
CD2 B:HIS684 4.3 38.5 1.0
ND1 B:HIS522 4.4 38.9 1.0
NE2 B:HIS684 4.4 37.4 1.0
ND1 B:HIS520 4.4 35.4 1.0
CG B:HIS520 4.5 34.7 1.0
CE1 B:PHE682 4.6 40.2 1.0
CA B:HIS684 4.8 38.3 1.0
CZ B:PHE682 4.8 39.8 1.0
CB B:ALA491 5.0 39.2 1.0

Copper binding site 3 out of 7 in 3ala

Go back to Copper Binding Sites List in 3ala
Copper binding site 3 out of 7 in the Crystal Structure of Vascular Adhesion Protein-1 in Space Group C2


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Crystal Structure of Vascular Adhesion Protein-1 in Space Group C2 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cu1762

b:58.0
occ:1.00
 ND1 C:HIS684 2.2 35.9 1.0
NE2 C:HIS520 2.2 34.8 1.0
NE2 C:HIS522 2.4 36.5 1.0
O C:HOH775 2.5 43.1 1.0
CE1 C:HIS520 3.0 36.9 1.0
CD2 C:HIS522 3.1 38.8 1.0
CE1 C:HIS684 3.1 38.7 1.0
CG C:HIS684 3.2 37.4 1.0
CD2 C:HIS520 3.3 36.7 1.0
CB C:HIS684 3.4 38.3 1.0
CE1 C:HIS522 3.6 39.8 1.0
O2 C:TPQ471 4.2 61.8 1.0
ND1 C:HIS520 4.2 35.3 1.0
NE2 C:HIS684 4.3 37.7 1.0
CD2 C:HIS684 4.3 38.6 1.0
CG C:HIS522 4.3 38.6 1.0
CG C:HIS520 4.4 35.1 1.0
ND1 C:HIS522 4.6 39.1 1.0
CE1 C:PHE682 4.9 40.4 1.0
CA C:HIS684 5.0 38.4 1.0

Copper binding site 4 out of 7 in 3ala

Go back to Copper Binding Sites List in 3ala
Copper binding site 4 out of 7 in the Crystal Structure of Vascular Adhesion Protein-1 in Space Group C2


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Crystal Structure of Vascular Adhesion Protein-1 in Space Group C2 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cu1762

b:44.7
occ:1.00
 NE2 D:HIS520 2.1 34.5 1.0
ND1 D:HIS684 2.2 36.0 1.0
NE2 D:HIS522 2.4 36.5 1.0
CE1 D:HIS520 2.9 36.4 1.0
CD2 D:HIS522 3.0 38.8 1.0
CG D:HIS684 3.2 37.3 1.0
CD2 D:HIS520 3.2 36.5 1.0
CE1 D:HIS684 3.3 38.7 1.0
CB D:HIS684 3.4 38.3 1.0
CE1 D:HIS522 3.6 40.0 1.0
ND1 D:HIS520 4.1 35.3 1.0
O2 D:TPQ471 4.1 48.9 1.0
CG D:HIS520 4.2 35.1 1.0
CG D:HIS522 4.3 38.6 1.0
CD2 D:HIS684 4.3 38.5 1.0
NE2 D:HIS684 4.4 37.7 1.0
ND1 D:HIS522 4.5 39.0 1.0
CA D:HIS684 4.9 38.5 1.0
CE1 D:PHE682 4.9 40.3 1.0

Copper binding site 5 out of 7 in 3ala

Go back to Copper Binding Sites List in 3ala
Copper binding site 5 out of 7 in the Crystal Structure of Vascular Adhesion Protein-1 in Space Group C2


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 5 of Crystal Structure of Vascular Adhesion Protein-1 in Space Group C2 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cu1762

b:49.1
occ:1.00
 NE2 E:HIS520 2.2 34.9 1.0
ND1 E:HIS684 2.2 35.9 1.0
NE2 E:HIS522 2.3 36.3 1.0
CD2 E:HIS522 2.9 38.5 1.0
CE1 E:HIS520 3.1 36.8 1.0
CG E:HIS684 3.1 37.2 1.0
CD2 E:HIS520 3.2 36.7 1.0
CE1 E:HIS684 3.3 38.8 1.0
CB E:HIS684 3.3 38.3 1.0
CE1 E:HIS522 3.5 39.9 1.0
CG E:HIS522 4.1 38.3 1.0
ND1 E:HIS520 4.2 35.2 1.0
CD2 E:HIS684 4.3 38.6 1.0
CG E:HIS520 4.3 34.8 1.0
NE2 E:HIS684 4.3 37.9 1.0
ND1 E:HIS522 4.4 39.0 1.0
CE1 E:PHE682 4.8 40.3 1.0
CA E:HIS684 4.8 38.5 1.0

Copper binding site 6 out of 7 in 3ala

Go back to Copper Binding Sites List in 3ala
Copper binding site 6 out of 7 in the Crystal Structure of Vascular Adhesion Protein-1 in Space Group C2


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 6 of Crystal Structure of Vascular Adhesion Protein-1 in Space Group C2 within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Cu1762

b:60.5
occ:1.00
 NE2 F:HIS522 2.2 36.1 1.0
NE2 F:HIS520 2.2 35.5 1.0
ND1 F:HIS684 2.3 35.7 1.0
CD2 F:HIS522 2.7 38.6 1.0
CE1 F:HIS520 3.1 37.1 1.0
CG F:HIS684 3.1 38.0 1.0
CD2 F:HIS520 3.2 36.9 1.0
CB F:HIS684 3.2 38.7 1.0
CE1 F:HIS684 3.4 38.7 1.0
CE1 F:HIS522 3.4 39.8 1.0
CG F:HIS522 4.0 38.8 1.0
ND1 F:HIS520 4.2 35.4 1.0
CG F:HIS520 4.2 35.5 1.0
ND1 F:HIS522 4.3 39.1 1.0
CD2 F:HIS684 4.3 38.8 1.0
NE2 F:HIS684 4.4 37.8 1.0
CE1 F:PHE682 4.7 40.4 1.0
CA F:HIS684 4.7 38.6 1.0
O2 F:TPQ471 4.9 46.0 1.0
CZ F:PHE682 4.9 40.0 1.0

Copper binding site 7 out of 7 in 3ala

Go back to Copper Binding Sites List in 3ala
Copper binding site 7 out of 7 in the Crystal Structure of Vascular Adhesion Protein-1 in Space Group C2


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 7 of Crystal Structure of Vascular Adhesion Protein-1 in Space Group C2 within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Cu1762

b:69.4
occ:1.00
 ND1 G:HIS684 2.1 36.0 1.0
NE2 G:HIS520 2.2 35.4 1.0
NE2 G:HIS522 2.4 36.3 1.0
CD2 G:HIS522 2.8 38.5 1.0
CG G:HIS684 2.8 37.5 1.0
CB G:HIS684 2.9 38.5 1.0
CE1 G:HIS520 3.0 37.0 1.0
CD2 G:HIS520 3.1 37.0 1.0
CE1 G:HIS684 3.2 38.9 1.0
CE1 G:HIS522 3.7 40.0 1.0
CD2 G:HIS684 4.1 38.7 1.0
ND1 G:HIS520 4.1 35.2 1.0
CG G:HIS522 4.1 38.5 1.0
CG G:HIS520 4.2 35.3 1.0
NE2 G:HIS684 4.2 37.9 1.0
CA G:HIS684 4.5 38.5 1.0
ND1 G:HIS522 4.5 39.2 1.0
CE1 G:PHE682 4.5 40.5 1.0
CZ G:PHE682 4.9 40.2 1.0

Reference:

K.Ernberg, A.P.Mcgrath, T.S.Peat, T.E.Adams, X.Xiao, T.Pham, J.Newman, I.A.Mcdonald, C.A.Collyer, J.M.Guss. A New Crystal Form of Human Vascular Adhesion Protein 1 Acta Crystallogr.,Sect.F V. 66 1572 2010.
ISSN: ESSN 1744-3091
PubMed: 21139198
DOI: 10.1107/S1744309110041515
Page generated: Sun Dec 13 11:08:53 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy