Atomistry » Copper » PDB 2z7y-3aws » 2zow
Atomistry »
  Copper »
    PDB 2z7y-3aws »
      2zow »

Copper in PDB 2zow: Crystal Structure of H2O2 Treated Cu,Zn-Sod

Enzymatic activity of Crystal Structure of H2O2 Treated Cu,Zn-Sod

All present enzymatic activity of Crystal Structure of H2O2 Treated Cu,Zn-Sod:
1.15.1.1;

Protein crystallography data

The structure of Crystal Structure of H2O2 Treated Cu,Zn-Sod, PDB code: 2zow was solved by S.Ito, T.Ishii, H.Sakai, K.Uchida, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.94 / 1.45
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 45.631, 51.009, 146.990, 90.00, 90.00, 90.00
R / Rfree (%) 19.6 / 22.1

Other elements in 2zow:

The structure of Crystal Structure of H2O2 Treated Cu,Zn-Sod also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Copper Binding Sites:

The binding sites of Copper atom in the Crystal Structure of H2O2 Treated Cu,Zn-Sod (pdb code 2zow). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the Crystal Structure of H2O2 Treated Cu,Zn-Sod, PDB code: 2zow:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in 2zow

Go back to Copper Binding Sites List in 2zow
Copper binding site 1 out of 2 in the Crystal Structure of H2O2 Treated Cu,Zn-Sod


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of H2O2 Treated Cu,Zn-Sod within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu301

b:17.6
occ:1.00
NE2 A:HIS46 2.0 13.3 1.0
NE2 A:HIS118 2.0 14.5 1.0
ND1 A:HIS44 2.0 14.5 1.0
CD2 A:HIS118 2.9 13.7 1.0
CE1 A:HIS46 3.0 12.0 1.0
CG A:HIS44 3.0 14.1 1.0
CD2 A:HIS46 3.0 12.9 1.0
CE1 A:HIS44 3.0 15.7 1.0
CE1 A:HIS118 3.1 15.0 1.0
NE2 A:HIS61 3.2 16.7 1.0
CB A:HIS44 3.3 13.7 1.0
CD2 A:HIS61 3.6 14.7 1.0
O A:HOH466 3.7 32.5 1.0
O A:HOH401 3.8 26.4 1.0
CB A:VAL116 4.0 14.4 1.0
ND1 A:HIS46 4.1 12.1 1.0
CG A:HIS118 4.1 13.7 1.0
ND1 A:HIS118 4.1 15.2 1.0
NE2 A:HIS44 4.1 16.2 1.0
CD2 A:HIS44 4.1 17.1 1.0
CG A:HIS46 4.1 12.1 1.0
N A:HIS44 4.1 12.1 1.0
CG1 A:VAL116 4.1 15.7 1.0
CE1 A:HIS61 4.1 15.6 1.0
CA A:HIS44 4.2 13.0 1.0
O A:VAL116 4.4 14.1 1.0
O A:HIS44 4.5 13.5 1.0
CG A:HIS61 4.6 15.6 1.0
C A:HIS44 4.6 11.9 1.0
CG2 A:VAL116 4.8 15.4 1.0
ND1 A:HIS61 4.9 14.0 1.0
C A:VAL116 4.9 13.0 1.0

Copper binding site 2 out of 2 in 2zow

Go back to Copper Binding Sites List in 2zow
Copper binding site 2 out of 2 in the Crystal Structure of H2O2 Treated Cu,Zn-Sod


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Crystal Structure of H2O2 Treated Cu,Zn-Sod within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu301

b:15.4
occ:1.00
NE2 B:HIS46 2.0 11.1 1.0
ND1 B:HIS44 2.0 13.5 1.0
NE2 B:HIS118 2.1 10.3 1.0
CD2 B:HIS118 2.9 10.8 1.0
CE1 B:HIS46 3.0 12.4 1.0
CG B:HIS44 3.0 10.8 1.0
CD2 B:HIS46 3.0 10.7 1.0
CE1 B:HIS44 3.0 12.6 1.0
CE1 B:HIS118 3.1 11.1 1.0
NE2 B:HIS61 3.2 10.8 1.0
CB B:HIS44 3.3 10.7 1.0
O B:HOH433 3.5 17.3 1.0
CD2 B:HIS61 3.6 13.0 1.0
CB B:VAL116 3.9 9.8 1.0
ND1 B:HIS46 4.1 13.2 1.0
NE2 B:HIS44 4.1 10.5 1.0
CD2 B:HIS44 4.1 11.5 1.0
CG B:HIS118 4.1 10.9 1.0
CG B:HIS46 4.1 11.1 1.0
CE1 B:HIS61 4.1 11.4 1.0
N B:HIS44 4.2 10.2 1.0
CG1 B:VAL116 4.2 12.5 1.0
ND1 B:HIS118 4.2 11.8 1.0
CA B:HIS44 4.2 10.3 1.0
O B:VAL116 4.4 11.7 1.0
O B:HIS44 4.5 10.4 1.0
C B:HIS44 4.6 9.2 1.0
CG B:HIS61 4.6 12.3 1.0
CG2 B:VAL116 4.7 12.6 1.0
ND1 B:HIS61 4.9 12.5 1.0
C B:VAL116 4.9 10.5 1.0
CA B:VAL116 5.0 10.2 1.0

Reference:

S.Ito, T.Ishii, H.Sakai, K.Uchida. Crystal Structures of H2O2-Treated Cu,Zn-Superoxide Dismutase To Be Published.
Page generated: Sun Dec 13 11:08:29 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy