Copper in the structure of Crystal Structure of D298K Copper Amine Oxidase From Arthrobacter Globiformis (pdb 2yx9)

The binding sites of Copper atom in the structure of Crystal Structure of D298K Copper Amine Oxidase From Arthrobacter Globiformis (pdb code 2yx9). This binding sites where shown with 5.0 Angstroms radius around Copper atom. The 2yx9 structure was solved by T.MURAKAWA, T.OKAJIMA, H.YAMAGUCHI, K.TANIZAWA, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 39.9-1.7 Space group I121 a (A) 158.012 b (A) 63.027 c (A) 184.119 alpha (°) 90.00 beta (°) 111.96 gamma (°) 90.00 Rfactor (%) 24.5 Rfree (%) 25.4 Copper Binding Sites: Copper binding site 1 out of 2 in 2yx9 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Copper in the PDB 2yx9. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Copper atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: His431, A: His433, A: His592, A: Met602, A: Hoh1081, A: Hoh1196, A: Hoh1351, A: Hoh1361, conact list: Atom Atom Distance (A) Cu NE2 A:His431 2.08 Cu ND1 A:His431 4.14 Cu CD2 A:His431 3.03 Cu CE1 A:His431 3.05 Cu CG A:His431 4.16 Cu NE2 A:His433 2.13 Cu ND1 A:His433 4.25 Cu CD2 A:His433 2.96 Cu CE1 A:His433 3.22 Cu CG A:His433 4.16 Cu NE2 A:His592 4.29 Cu CB A:His592 3.31 Cu ND1 A:His592 2.19 Cu CD2 A:His592 4.26 Cu CE1 A:His592 3.21 Cu CG A:His592 3.10 Cu CA A:His592 4.84 Cu SD A:Met602 4.93 Cu O A:Hoh1081 4.41 Cu O A:Hoh1196 4.31 Cu O A:Hoh1351 2.48 Cu O A:Hoh1361 3.55 interactive model: Copper binding site 2 out of 2 in 2yx9 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Copper in the PDB 2yx9. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Copper atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: B: His431, B: His433, B: His592, B: Met602, B: Hoh1103, B: Hoh1307, B: Hoh1408, conact list: Atom Atom Distance (A) Cu NE2 B:His431 2.09 Cu ND1 B:His431 4.12 Cu CD2 B:His431 3.07 Cu CE1 B:His431 3.03 Cu CG B:His431 4.17 Cu NE2 B:His433 2.16 Cu ND1 B:His433 4.29 Cu CD2 B:His433 2.93 Cu CE1 B:His433 3.29 Cu CG B:His433 4.16 Cu NE2 B:His592 4.26 Cu CB B:His592 3.31 Cu ND1 B:His592 2.17 Cu CD2 B:His592 4.24 Cu CE1 B:His592 3.18 Cu CG B:His592 3.08 Cu CA B:His592 4.85 Cu SD B:Met602 4.83 Cu O B:Hoh1103 4.50 Cu O B:Hoh1307 4.39 Cu O B:Hoh1408 2.58 interactive model: