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Copper in PDB 2xy5: Crystal Structure of An Artificial Salen-Copper Basepair in Complex with Fragment Dna Polymerase I From Bacillus Stearothermophilus

Enzymatic activity of Crystal Structure of An Artificial Salen-Copper Basepair in Complex with Fragment Dna Polymerase I From Bacillus Stearothermophilus

All present enzymatic activity of Crystal Structure of An Artificial Salen-Copper Basepair in Complex with Fragment Dna Polymerase I From Bacillus Stearothermophilus:
2.7.7.7;

Protein crystallography data

The structure of Crystal Structure of An Artificial Salen-Copper Basepair in Complex with Fragment Dna Polymerase I From Bacillus Stearothermophilus, PDB code: 2xy5 was solved by C.Kaul, M.Mueller, M.Wagner, S.Schneider, T.Carell, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 67.68 / 2.22
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 88.171, 93.469, 105.591, 90.00, 90.00, 90.00
R / Rfree (%) 19.314 / 23.464

Copper Binding Sites:

The binding sites of Copper atom in the Crystal Structure of An Artificial Salen-Copper Basepair in Complex with Fragment Dna Polymerase I From Bacillus Stearothermophilus (pdb code 2xy5). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total only one binding site of Copper was determined in the Crystal Structure of An Artificial Salen-Copper Basepair in Complex with Fragment Dna Polymerase I From Bacillus Stearothermophilus, PDB code: 2xy5:

Copper binding site 1 out of 1 in 2xy5

Go back to Copper Binding Sites List in 2xy5
Copper binding site 1 out of 1 in the Crystal Structure of An Artificial Salen-Copper Basepair in Complex with Fragment Dna Polymerase I From Bacillus Stearothermophilus


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of An Artificial Salen-Copper Basepair in Complex with Fragment Dna Polymerase I From Bacillus Stearothermophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cu1014

b:42.7
occ:1.00
 OAR C:SAY9 1.8 32.4 1.0
NAA C:EDN1015 2.0 40.7 1.0
OAR B:SAY24 2.0 48.5 1.0
NAD C:EDN1015 2.3 40.0 1.0
CAC C:SAY9 2.9 34.6 1.0
CAG B:SAY24 2.9 47.6 1.0
CAG C:SAY9 3.0 34.8 1.0
CAC B:SAY24 3.0 47.6 1.0
CAB C:EDN1015 3.2 40.4 1.0
CAD C:SAY9 3.3 34.1 1.0
CAD B:SAY24 3.3 46.9 1.0
CAC C:EDN1015 3.3 40.6 1.0
N1 C:DA8 3.6 35.0 1.0
N1 C:DG10 3.7 42.1 1.0
C6 C:DA8 3.7 34.7 1.0
C6 C:DG10 3.7 43.1 1.0
O6 C:DG10 3.8 44.1 1.0
C2 C:DA8 3.9 35.4 1.0
N6 C:DA8 4.1 34.2 1.0
CAB C:SAY9 4.1 34.2 1.0
N3 B:DT25 4.1 40.8 1.0
C5 C:DA8 4.1 34.6 1.0
CAB B:SAY24 4.2 47.6 1.0
C2 C:DG10 4.3 42.9 1.0
N4 B:DC23 4.3 48.6 1.0
C5 C:DG10 4.4 41.3 1.0
N3 C:DA8 4.4 34.2 1.0
C4 C:DA8 4.4 34.4 1.0
N3 B:DC23 4.5 52.1 1.0
O4 B:DT25 4.6 43.7 1.0
C4 B:DC23 4.6 51.1 1.0
CAE C:SAY9 4.6 35.3 1.0
C4 B:DT25 4.6 41.3 1.0
CAE B:SAY24 4.7 47.0 1.0
C2 B:DT25 4.8 41.4 1.0
N2 C:DG10 4.8 43.2 1.0
C4 C:DG10 4.8 41.4 1.0
O2 B:DT25 4.8 40.3 1.0
N3 C:DG10 4.9 41.9 1.0
N7 C:DA8 4.9 36.5 1.0

Reference:

C.Kaul, M.Mueller, M.Wagner, S.Schneider, T.Carell. Reversible Bond Formation Enables the Replication and Amplification of A Crosslinking Salen Complex As An Orthogonal Base Pair. Nature Chem. V. 3 794 2011.
ISSN: ISSN 1755-4330
PubMed: 21941252
DOI: 10.1038/NCHEM.1117
Page generated: Wed Jul 31 00:17:32 2024

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