Atomistry » Copper » PDB 2vr7-2xv0 » 2xmm
Atomistry »
  Copper »
    PDB 2vr7-2xv0 »
      2xmm »

Copper in PDB 2xmm: Visualising the Metal-Binding Versatility of Copper Trafficking Sites: H61Y ATX1 Side-to-Side

Protein crystallography data

The structure of Visualising the Metal-Binding Versatility of Copper Trafficking Sites: H61Y ATX1 Side-to-Side, PDB code: 2xmm was solved by A.Badarau, S.J.Firbank, A.A.Mccarthy, M.J.Banfield, C.Dennison, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 53.22 / 1.65
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 62.630, 41.400, 55.580, 90.00, 106.76, 90.00
R / Rfree (%) 16.544 / 20.037

Other elements in 2xmm:

The structure of Visualising the Metal-Binding Versatility of Copper Trafficking Sites: H61Y ATX1 Side-to-Side also contains other interesting chemical elements:

Chlorine (Cl) 1 atom
Sodium (Na) 1 atom

Copper Binding Sites:

The binding sites of Copper atom in the Visualising the Metal-Binding Versatility of Copper Trafficking Sites: H61Y ATX1 Side-to-Side (pdb code 2xmm). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 4 binding sites of Copper where determined in the Visualising the Metal-Binding Versatility of Copper Trafficking Sites: H61Y ATX1 Side-to-Side, PDB code: 2xmm:
Jump to Copper binding site number: 1; 2; 3; 4;

Copper binding site 1 out of 4 in 2xmm

Go back to Copper Binding Sites List in 2xmm
Copper binding site 1 out of 4 in the Visualising the Metal-Binding Versatility of Copper Trafficking Sites: H61Y ATX1 Side-to-Side


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Visualising the Metal-Binding Versatility of Copper Trafficking Sites: H61Y ATX1 Side-to-Side within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu1067

b:23.4
occ:1.00
SG A:CYS12 2.1 14.2 1.0
SG A:CYS15 2.2 15.9 1.0
CU B:CU1069 2.5 20.2 1.0
CU A:CU1068 2.9 26.0 1.0
CU B:CU1070 2.9 22.4 1.0
CB A:CYS12 3.2 15.7 1.0
N A:CYS15 3.2 15.7 1.0
CB A:CYS15 3.2 15.6 1.0
N A:CYS12 3.2 15.8 1.0
CA A:CYS12 3.6 15.1 1.0
O A:CYS12 3.7 15.3 1.0
CA A:CYS15 3.7 16.2 1.0
C A:CYS12 3.8 15.6 1.0
SG B:CYS12 3.8 15.2 1.0
C A:ALA11 3.9 15.9 1.0
CB A:ALA11 3.9 16.5 1.0
SG B:CYS15 4.0 14.8 1.0
N A:ALA11 4.0 16.7 1.0
CA A:ALA11 4.1 16.5 1.0
CB A:ALA14 4.2 16.4 1.0
C A:ALA14 4.2 15.7 1.0
N A:ALA14 4.4 16.6 1.0
CA A:ALA14 4.5 15.7 1.0
CB B:ALA14 4.7 16.7 1.0
N A:GLU13 4.7 16.0 1.0
O A:ALA11 4.7 14.9 1.0
CL A:CL1066 4.8 16.4 0.5
OH A:TYR61 4.9 19.9 1.0

Copper binding site 2 out of 4 in 2xmm

Go back to Copper Binding Sites List in 2xmm
Copper binding site 2 out of 4 in the Visualising the Metal-Binding Versatility of Copper Trafficking Sites: H61Y ATX1 Side-to-Side


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Visualising the Metal-Binding Versatility of Copper Trafficking Sites: H61Y ATX1 Side-to-Side within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu1068

b:26.0
occ:1.00
SG A:CYS15 2.2 15.9 1.0
SG B:CYS15 2.2 14.8 1.0
OH A:TYR61 2.3 19.9 1.0
CU B:CU1070 2.8 22.4 1.0
CU A:CU1067 2.9 23.4 1.0
CB A:CYS15 3.2 15.6 1.0
CA A:CYS15 3.3 16.2 1.0
CB B:CYS15 3.3 16.9 1.0
N B:CYS15 3.3 16.6 1.0
CA B:CYS15 3.3 16.1 1.0
N A:CYS15 3.5 15.7 1.0
CZ A:TYR61 3.5 17.5 1.0
CE1 A:TYR61 3.9 19.2 1.0
O A:HOH2103 3.9 20.4 1.0
C B:ALA14 4.0 16.6 1.0
C A:ALA14 4.1 15.7 1.0
CB B:ALA14 4.3 16.7 1.0
O B:ALA14 4.4 16.4 1.0
O A:ALA14 4.5 16.2 1.0
CU B:CU1069 4.5 20.2 1.0
SG B:CYS12 4.5 15.2 1.0
CB A:ALA14 4.6 16.4 1.0
SG A:CYS12 4.6 14.2 1.0
CE2 A:TYR61 4.7 18.7 1.0
CA B:ALA14 4.7 16.1 1.0
C A:CYS15 4.8 15.1 1.0
O B:HOH2020 4.8 21.7 1.0
C B:CYS15 4.8 16.1 1.0

Copper binding site 3 out of 4 in 2xmm

Go back to Copper Binding Sites List in 2xmm
Copper binding site 3 out of 4 in the Visualising the Metal-Binding Versatility of Copper Trafficking Sites: H61Y ATX1 Side-to-Side


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Visualising the Metal-Binding Versatility of Copper Trafficking Sites: H61Y ATX1 Side-to-Side within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu1069

b:20.2
occ:1.00
SG A:CYS12 2.2 14.2 1.0
SG B:CYS12 2.3 15.2 1.0
CL A:CL1066 2.5 16.4 0.5
CU A:CU1067 2.5 23.4 1.0
CU B:CU1070 2.6 22.4 1.0
CB A:CYS12 3.2 15.7 1.0
CB B:CYS12 3.2 15.9 1.0
O A:HOH2010 3.7 29.7 1.0
CB B:ALA11 4.3 15.8 1.0
CB A:ALA11 4.3 16.5 1.0
N B:CYS12 4.4 14.7 1.0
CA B:CYS12 4.4 14.4 1.0
CA A:CYS12 4.4 15.1 1.0
N A:CYS12 4.4 15.8 1.0
SG A:CYS15 4.5 15.9 1.0
CU A:CU1068 4.5 26.0 1.0
SG B:CYS15 4.5 14.8 1.0
C B:ALA11 4.6 15.0 1.0
C A:ALA11 4.6 15.9 1.0
O B:ALA11 4.8 15.0 1.0
O A:ALA11 4.9 14.9 1.0
CB A:ALA14 4.9 16.4 1.0
CB B:ALA14 5.0 16.7 1.0

Copper binding site 4 out of 4 in 2xmm

Go back to Copper Binding Sites List in 2xmm
Copper binding site 4 out of 4 in the Visualising the Metal-Binding Versatility of Copper Trafficking Sites: H61Y ATX1 Side-to-Side


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Visualising the Metal-Binding Versatility of Copper Trafficking Sites: H61Y ATX1 Side-to-Side within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu1070

b:22.4
occ:1.00
SG B:CYS12 2.2 15.2 1.0
SG B:CYS15 2.2 14.8 1.0
CU B:CU1069 2.6 20.2 1.0
CU A:CU1068 2.8 26.0 1.0
CU A:CU1067 2.9 23.4 1.0
CB B:CYS15 3.1 16.9 1.0
N B:CYS15 3.2 16.6 1.0
N B:CYS12 3.3 14.7 1.0
CB B:CYS12 3.3 15.9 1.0
CA B:CYS12 3.7 14.4 1.0
CA B:CYS15 3.7 16.1 1.0
O B:CYS12 3.7 14.5 1.0
SG A:CYS12 3.8 14.2 1.0
C B:CYS12 3.9 15.3 1.0
SG A:CYS15 3.9 15.9 1.0
C B:ALA11 4.0 15.0 1.0
CB B:ALA11 4.0 15.8 1.0
N B:ALA11 4.1 16.2 1.0
CA B:ALA11 4.2 15.8 1.0
C B:ALA14 4.2 16.6 1.0
CB B:ALA14 4.2 16.7 1.0
N B:ALA14 4.3 16.2 1.0
CA B:ALA14 4.5 16.1 1.0
CB A:ALA14 4.5 16.4 1.0
O B:ALA11 4.8 15.0 1.0
CL A:CL1066 4.8 16.4 0.5
N B:GLU13 4.9 15.8 1.0
OH A:TYR61 5.0 19.9 1.0

Reference:

A.Badarau, S.J.Firbank, A.A.Mccarthy, M.J.Banfield, C.Dennison. Visualizing the Metal-Binding Versatility of Copper Trafficking Sites . Biochemistry V. 49 7798 2010.
ISSN: ISSN 0006-2960
PubMed: 20726513
DOI: 10.1021/BI101064W
Page generated: Sun Dec 13 11:07:38 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy