Copper in the structure of Visualising the Metal-Binding Versatility of Copper Trafficking Sites: H61Y ATX1 Side-to-Side (pdb 2xmm)

The binding sites of Copper atom in the structure of Visualising the Metal-Binding Versatility of Copper Trafficking Sites: H61Y ATX1 Side-to-Side (pdb code 2xmm). This binding sites where shown with 5.0 Angstroms radius around Copper atom. The 2xmm structure was solved by A.BADARAU, S.J.FIRBANK, A.A.MCCARTHY, M.J.BANFIELD, C.DENNISON, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 53.2-1.6 Space group C121 a (A) 62.630 b (A) 41.400 c (A) 55.580 alpha (°) 90.00 beta (°) 106.76 gamma (°) 90.00 Rfactor (%) 16.544 Rfree (%) 20.037 Copper Binding Sites: Copper binding site 1 out of 4 in 2xmm Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Copper in the PDB 2xmm. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Copper atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Ala11, A: Cys12, A: Glu13, A: Ala14, A: Cys15, A: Tyr61, B: Cys12, B: Ala14, B: Cys15, A: Cl1066, A: Cu1068, B: Cu1069, B: Cu1070, conact list: Atom Atom Distance (A) Cu O A:Ala11 4.74 Cu N A:Ala11 3.98 Cu C A:Ala11 3.89 Cu CB A:Ala11 3.93 Cu CA A:Ala11 4.12 Cu O A:Cys12 3.65 Cu N A:Cys12 3.24 Cu CB A:Cys12 3.17 Cu SG A:Cys12 2.09 Cu C A:Cys12 3.77 Cu CA A:Cys12 3.56 Cu N A:Glu13 4.71 Cu N A:Ala14 4.36 Cu C A:Ala14 4.18 Cu CB A:Ala14 4.16 Cu CA A:Ala14 4.46 Cu N A:Cys15 3.21 Cu CB A:Cys15 3.23 Cu SG A:Cys15 2.24 Cu CA A:Cys15 3.74 Cu OH A:Tyr61 4.94 Cu SG B:Cys12 3.79 Cu CB B:Ala14 4.67 Cu SG B:Cys15 3.95 Cu CL A:Cl1066 4.76 Cu CU A:Cu1068 2.86 Cu CU B:Cu1069 2.52 Cu CU B:Cu1070 2.90 interactive model: Copper binding site 2 out of 4 in 2xmm Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Copper in the PDB 2xmm. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Copper atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Cys12, A: Ala14, A: Cys15, A: Tyr61, B: Cys12, B: Ala14, B: Cys15, A: Cu1067, B: Cu1069, B: Cu1070, A: Hoh2103, B: Hoh2020, conact list: Atom Atom Distance (A) Cu SG A:Cys12 4.62 Cu O A:Ala14 4.51 Cu C A:Ala14 4.14 Cu CB A:Ala14 4.61 Cu N A:Cys15 3.47 Cu CB A:Cys15 3.17 Cu SG A:Cys15 2.17 Cu C A:Cys15 4.79 Cu CA A:Cys15 3.30 Cu CE2 A:Tyr61 4.66 Cu CZ A:Tyr61 3.47 Cu CE1 A:Tyr61 3.87 Cu OH A:Tyr61 2.32 Cu SG B:Cys12 4.54 Cu O B:Ala14 4.36 Cu C B:Ala14 3.96 Cu CB B:Ala14 4.30 Cu CA B:Ala14 4.75 Cu N B:Cys15 3.31 Cu CB B:Cys15 3.31 Cu SG B:Cys15 2.25 Cu C B:Cys15 4.84 Cu CA B:Cys15 3.32 Cu CU A:Cu1067 2.86 Cu CU B:Cu1069 4.53 Cu CU B:Cu1070 2.79 Cu O A:Hoh2103 3.88 Cu O B:Hoh2020 4.83 interactive model: Copper binding site 3 out of 4 in 2xmm Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Copper in the PDB 2xmm. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Copper atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Ala11, A: Cys12, A: Ala14, A: Cys15, B: Ala11, B: Cys12, B: Ala14, B: Cys15, A: Cl1066, A: Cu1067, A: Cu1068, B: Cu1070, A: Hoh2010, conact list: Atom Atom Distance (A) Cu O A:Ala11 4.88 Cu C A:Ala11 4.61 Cu CB A:Ala11 4.32 Cu N A:Cys12 4.44 Cu CB A:Cys12 3.15 Cu SG A:Cys12 2.22 Cu CA A:Cys12 4.38 Cu CB A:Ala14 4.88 Cu SG A:Cys15 4.49 Cu O B:Ala11 4.83 Cu C B:Ala11 4.57 Cu CB B:Ala11 4.32 Cu N B:Cys12 4.36 Cu CB B:Cys12 3.19 Cu SG B:Cys12 2.25 Cu CA B:Cys12 4.38 Cu CB B:Ala14 5.00 Cu SG B:Cys15 4.55 Cu CL A:Cl1066 2.49 Cu CU A:Cu1067 2.52 Cu CU A:Cu1068 4.53 Cu CU B:Cu1070 2.59 Cu O A:Hoh2010 3.73 interactive model: Copper binding site 4 out of 4 in 2xmm Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 4 of Copper in the PDB 2xmm. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Copper atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Cys12, A: Ala14, A: Cys15, A: Tyr61, B: Ala11, B: Cys12, B: Glu13, B: Ala14, B: Cys15, A: Cl1066, A: Cu1067, A: Cu1068, B: Cu1069, conact list: Atom Atom Distance (A) Cu SG A:Cys12 3.78 Cu CB A:Ala14 4.51 Cu SG A:Cys15 3.92 Cu OH A:Tyr61 4.96 Cu O B:Ala11 4.80 Cu N B:Ala11 4.06 Cu C B:Ala11 3.95 Cu CB B:Ala11 3.97 Cu CA B:Ala11 4.18 Cu O B:Cys12 3.75 Cu N B:Cys12 3.26 Cu CB B:Cys12 3.35 Cu SG B:Cys12 2.18 Cu C B:Cys12 3.90 Cu CA B:Cys12 3.67 Cu N B:Glu13 4.86 Cu N B:Ala14 4.34 Cu C B:Ala14 4.19 Cu CB B:Ala14 4.20 Cu CA B:Ala14 4.46 Cu N B:Cys15 3.18 Cu CB B:Cys15 3.14 Cu SG B:Cys15 2.18 Cu CA B:Cys15 3.70 Cu CL A:Cl1066 4.85 Cu CU A:Cu1067 2.90 Cu CU A:Cu1068 2.79 Cu CU B:Cu1069 2.59 interactive model: