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Copper in PDB 2xmm: Visualising the Metal-Binding Versatility of Copper Trafficking Sites: H61Y ATX1 Side-to-Side

Protein crystallography data

The structure of Visualising the Metal-Binding Versatility of Copper Trafficking Sites: H61Y ATX1 Side-to-Side, PDB code: 2xmm was solved by A.Badarau, S.J.Firbank, A.A.Mccarthy, M.J.Banfield, C.Dennison, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 53.22 / 1.65
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 62.630, 41.400, 55.580, 90.00, 106.76, 90.00
R / Rfree (%) 16.544 / 20.037

Other elements in 2xmm:

The structure of Visualising the Metal-Binding Versatility of Copper Trafficking Sites: H61Y ATX1 Side-to-Side also contains other interesting chemical elements:

Chlorine (Cl) 1 atom
Sodium (Na) 1 atom

Copper Binding Sites:

The binding sites of Copper atom in the Visualising the Metal-Binding Versatility of Copper Trafficking Sites: H61Y ATX1 Side-to-Side (pdb code 2xmm). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 4 binding sites of Copper where determined in the Visualising the Metal-Binding Versatility of Copper Trafficking Sites: H61Y ATX1 Side-to-Side, PDB code: 2xmm:
Jump to Copper binding site number: 1; 2; 3; 4;

Copper binding site 1 out of 4 in 2xmm

Go back to Copper Binding Sites List in 2xmm
Copper binding site 1 out of 4 in the Visualising the Metal-Binding Versatility of Copper Trafficking Sites: H61Y ATX1 Side-to-Side


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Visualising the Metal-Binding Versatility of Copper Trafficking Sites: H61Y ATX1 Side-to-Side within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu1067

b:23.4
occ:1.00
SG A:CYS12 2.1 14.2 1.0
SG A:CYS15 2.2 15.9 1.0
CU B:CU1069 2.5 20.2 1.0
CU A:CU1068 2.9 26.0 1.0
CU B:CU1070 2.9 22.4 1.0
CB A:CYS12 3.2 15.7 1.0
N A:CYS15 3.2 15.7 1.0
CB A:CYS15 3.2 15.6 1.0
N A:CYS12 3.2 15.8 1.0
CA A:CYS12 3.6 15.1 1.0
O A:CYS12 3.7 15.3 1.0
CA A:CYS15 3.7 16.2 1.0
C A:CYS12 3.8 15.6 1.0
SG B:CYS12 3.8 15.2 1.0
C A:ALA11 3.9 15.9 1.0
CB A:ALA11 3.9 16.5 1.0
SG B:CYS15 4.0 14.8 1.0
N A:ALA11 4.0 16.7 1.0
CA A:ALA11 4.1 16.5 1.0
CB A:ALA14 4.2 16.4 1.0
C A:ALA14 4.2 15.7 1.0
N A:ALA14 4.4 16.6 1.0
CA A:ALA14 4.5 15.7 1.0
CB B:ALA14 4.7 16.7 1.0
N A:GLU13 4.7 16.0 1.0
O A:ALA11 4.7 14.9 1.0
CL A:CL1066 4.8 16.4 0.5
OH A:TYR61 4.9 19.9 1.0

Copper binding site 2 out of 4 in 2xmm

Go back to Copper Binding Sites List in 2xmm
Copper binding site 2 out of 4 in the Visualising the Metal-Binding Versatility of Copper Trafficking Sites: H61Y ATX1 Side-to-Side


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Visualising the Metal-Binding Versatility of Copper Trafficking Sites: H61Y ATX1 Side-to-Side within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu1068

b:26.0
occ:1.00
SG A:CYS15 2.2 15.9 1.0
SG B:CYS15 2.2 14.8 1.0
OH A:TYR61 2.3 19.9 1.0
CU B:CU1070 2.8 22.4 1.0
CU A:CU1067 2.9 23.4 1.0
CB A:CYS15 3.2 15.6 1.0
CA A:CYS15 3.3 16.2 1.0
CB B:CYS15 3.3 16.9 1.0
N B:CYS15 3.3 16.6 1.0
CA B:CYS15 3.3 16.1 1.0
N A:CYS15 3.5 15.7 1.0
CZ A:TYR61 3.5 17.5 1.0
CE1 A:TYR61 3.9 19.2 1.0
O A:HOH2103 3.9 20.4 1.0
C B:ALA14 4.0 16.6 1.0
C A:ALA14 4.1 15.7 1.0
CB B:ALA14 4.3 16.7 1.0
O B:ALA14 4.4 16.4 1.0
O A:ALA14 4.5 16.2 1.0
CU B:CU1069 4.5 20.2 1.0
SG B:CYS12 4.5 15.2 1.0
CB A:ALA14 4.6 16.4 1.0
SG A:CYS12 4.6 14.2 1.0
CE2 A:TYR61 4.7 18.7 1.0
CA B:ALA14 4.7 16.1 1.0
C A:CYS15 4.8 15.1 1.0
O B:HOH2020 4.8 21.7 1.0
C B:CYS15 4.8 16.1 1.0

Copper binding site 3 out of 4 in 2xmm

Go back to Copper Binding Sites List in 2xmm
Copper binding site 3 out of 4 in the Visualising the Metal-Binding Versatility of Copper Trafficking Sites: H61Y ATX1 Side-to-Side


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Visualising the Metal-Binding Versatility of Copper Trafficking Sites: H61Y ATX1 Side-to-Side within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu1069

b:20.2
occ:1.00
SG A:CYS12 2.2 14.2 1.0
SG B:CYS12 2.3 15.2 1.0
CL A:CL1066 2.5 16.4 0.5
CU A:CU1067 2.5 23.4 1.0
CU B:CU1070 2.6 22.4 1.0
CB A:CYS12 3.2 15.7 1.0
CB B:CYS12 3.2 15.9 1.0
O A:HOH2010 3.7 29.7 1.0
CB B:ALA11 4.3 15.8 1.0
CB A:ALA11 4.3 16.5 1.0
N B:CYS12 4.4 14.7 1.0
CA B:CYS12 4.4 14.4 1.0
CA A:CYS12 4.4 15.1 1.0
N A:CYS12 4.4 15.8 1.0
SG A:CYS15 4.5 15.9 1.0
CU A:CU1068 4.5 26.0 1.0
SG B:CYS15 4.5 14.8 1.0
C B:ALA11 4.6 15.0 1.0
C A:ALA11 4.6 15.9 1.0
O B:ALA11 4.8 15.0 1.0
O A:ALA11 4.9 14.9 1.0
CB A:ALA14 4.9 16.4 1.0
CB B:ALA14 5.0 16.7 1.0

Copper binding site 4 out of 4 in 2xmm

Go back to Copper Binding Sites List in 2xmm
Copper binding site 4 out of 4 in the Visualising the Metal-Binding Versatility of Copper Trafficking Sites: H61Y ATX1 Side-to-Side


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Visualising the Metal-Binding Versatility of Copper Trafficking Sites: H61Y ATX1 Side-to-Side within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu1070

b:22.4
occ:1.00
SG B:CYS12 2.2 15.2 1.0
SG B:CYS15 2.2 14.8 1.0
CU B:CU1069 2.6 20.2 1.0
CU A:CU1068 2.8 26.0 1.0
CU A:CU1067 2.9 23.4 1.0
CB B:CYS15 3.1 16.9 1.0
N B:CYS15 3.2 16.6 1.0
N B:CYS12 3.3 14.7 1.0
CB B:CYS12 3.3 15.9 1.0
CA B:CYS12 3.7 14.4 1.0
CA B:CYS15 3.7 16.1 1.0
O B:CYS12 3.7 14.5 1.0
SG A:CYS12 3.8 14.2 1.0
C B:CYS12 3.9 15.3 1.0
SG A:CYS15 3.9 15.9 1.0
C B:ALA11 4.0 15.0 1.0
CB B:ALA11 4.0 15.8 1.0
N B:ALA11 4.1 16.2 1.0
CA B:ALA11 4.2 15.8 1.0
C B:ALA14 4.2 16.6 1.0
CB B:ALA14 4.2 16.7 1.0
N B:ALA14 4.3 16.2 1.0
CA B:ALA14 4.5 16.1 1.0
CB A:ALA14 4.5 16.4 1.0
O B:ALA11 4.8 15.0 1.0
CL A:CL1066 4.8 16.4 0.5
N B:GLU13 4.9 15.8 1.0
OH A:TYR61 5.0 19.9 1.0

Reference:

A.Badarau, S.J.Firbank, A.A.Mccarthy, M.J.Banfield, C.Dennison. Visualizing the Metal-Binding Versatility of Copper Trafficking Sites . Biochemistry V. 49 7798 2010.
ISSN: ISSN 0006-2960
PubMed: 20726513
DOI: 10.1021/BI101064W
Page generated: Wed Oct 28 14:22:14 2020
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