Atomistry » Copper » PDB 2vr7-2xv0 » 2xmk
Atomistry »
  Copper »
    PDB 2vr7-2xv0 »
      2xmk »

Copper in PDB 2xmk: Visualising the Metal-Binding Versatility of Copper Trafficking Sites: ATX1 Side-to-Side (Anaerobic)

Protein crystallography data

The structure of Visualising the Metal-Binding Versatility of Copper Trafficking Sites: ATX1 Side-to-Side (Anaerobic), PDB code: 2xmk was solved by A.Badarau, S.J.Firbank, A.A.Mccarthy, M.J.Banfield, C.Dennison, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 53.22 / 1.35
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 62.991, 41.709, 55.791, 90.00, 107.49, 90.00
R / Rfree (%) 12.94 / 15.274

Other elements in 2xmk:

The structure of Visualising the Metal-Binding Versatility of Copper Trafficking Sites: ATX1 Side-to-Side (Anaerobic) also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms
Sodium (Na) 1 atom

Copper Binding Sites:

The binding sites of Copper atom in the Visualising the Metal-Binding Versatility of Copper Trafficking Sites: ATX1 Side-to-Side (Anaerobic) (pdb code 2xmk). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 4 binding sites of Copper where determined in the Visualising the Metal-Binding Versatility of Copper Trafficking Sites: ATX1 Side-to-Side (Anaerobic), PDB code: 2xmk:
Jump to Copper binding site number: 1; 2; 3; 4;

Copper binding site 1 out of 4 in 2xmk

Go back to Copper Binding Sites List in 2xmk
Copper binding site 1 out of 4 in the Visualising the Metal-Binding Versatility of Copper Trafficking Sites: ATX1 Side-to-Side (Anaerobic)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Visualising the Metal-Binding Versatility of Copper Trafficking Sites: ATX1 Side-to-Side (Anaerobic) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu1101

b:9.5
occ:1.00
SG B:CYS2012 2.2 8.2 1.0
SG A:CYS1012 2.2 8.4 1.0
CL A:CL1104 2.4 12.8 0.5
CU B:CU1102 2.6 10.2 1.0
CU A:CU2101 2.7 10.0 1.0
CB B:CYS2012 3.2 6.7 1.0
CB A:CYS1012 3.2 6.9 1.0
O A:HOH3010 4.0 21.7 1.0
CB A:ALA1011 4.3 9.2 1.0
CA A:CYS1012 4.3 7.6 1.0
CA B:CYS2012 4.4 7.0 1.0
CB B:ALA2011 4.4 9.2 1.0
N A:CYS1012 4.4 7.5 1.0
N B:CYS2012 4.4 7.1 1.0
SG B:CYS2015 4.5 8.1 1.0
SG A:CYS1015 4.6 8.0 1.0
C A:ALA1011 4.6 8.1 1.0
C B:ALA2011 4.6 7.8 1.0
CU A:CU2102 4.8 8.2 1.0
O A:ALA1011 4.9 9.3 1.0
O B:HOH3050 4.9 19.5 1.0
O B:ALA2011 4.9 8.7 1.0
CB B:ALA2014 4.9 8.9 1.0
O A:HOH3054 5.0 21.0 1.0

Copper binding site 2 out of 4 in 2xmk

Go back to Copper Binding Sites List in 2xmk
Copper binding site 2 out of 4 in the Visualising the Metal-Binding Versatility of Copper Trafficking Sites: ATX1 Side-to-Side (Anaerobic)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Visualising the Metal-Binding Versatility of Copper Trafficking Sites: ATX1 Side-to-Side (Anaerobic) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu1102

b:10.2
occ:1.00
SG B:CYS2015 2.1 8.1 1.0
SG B:CYS2012 2.2 8.2 1.0
CU B:CU1101 2.6 9.5 1.0
CU A:CU2102 3.0 8.2 1.0
CU A:CU2101 3.0 10.0 1.0
N B:CYS2015 3.1 6.2 1.0
CB B:CYS2015 3.1 7.6 1.0
N B:CYS2012 3.2 7.1 1.0
CB B:CYS2012 3.3 6.7 1.0
CA B:CYS2012 3.6 7.0 1.0
O B:CYS2012 3.6 6.5 1.0
CA B:CYS2015 3.6 6.8 1.0
C B:CYS2012 3.8 6.7 1.0
SG A:CYS1012 3.8 8.4 1.0
C B:ALA2011 3.9 7.8 1.0
SG A:CYS1015 3.9 8.0 1.0
CB B:ALA2011 3.9 9.2 1.0
N B:ALA2011 4.0 7.7 1.0
C B:ALA2014 4.1 7.1 1.0
CA B:ALA2011 4.1 7.6 1.0
CB B:ALA2014 4.2 8.9 1.0
N B:ALA2014 4.3 8.0 1.0
CA B:ALA2014 4.4 7.5 1.0
CB A:ALA1014 4.7 10.2 1.0
N B:GLU2013 4.7 7.1 1.0
O B:ALA2011 4.8 8.7 1.0
CL A:CL1104 4.8 12.8 0.5
C B:CYS2015 5.0 6.3 1.0

Copper binding site 3 out of 4 in 2xmk

Go back to Copper Binding Sites List in 2xmk
Copper binding site 3 out of 4 in the Visualising the Metal-Binding Versatility of Copper Trafficking Sites: ATX1 Side-to-Side (Anaerobic)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Visualising the Metal-Binding Versatility of Copper Trafficking Sites: ATX1 Side-to-Side (Anaerobic) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu2101

b:10.0
occ:1.00
SG A:CYS1015 2.1 8.0 1.0
SG A:CYS1012 2.2 8.4 1.0
CU B:CU1101 2.7 9.5 1.0
CU A:CU2102 3.0 8.2 1.0
CU B:CU1102 3.0 10.2 1.0
N A:CYS1015 3.2 6.6 1.0
N A:CYS1012 3.2 7.5 1.0
CB A:CYS1015 3.2 6.9 1.0
CB A:CYS1012 3.3 6.9 1.0
CA A:CYS1012 3.5 7.6 1.0
O A:CYS1012 3.6 7.1 1.0
CA A:CYS1015 3.7 6.5 1.0
C A:CYS1012 3.7 7.2 1.0
SG B:CYS2012 3.8 8.2 1.0
C A:ALA1011 3.9 8.1 1.0
SG B:CYS2015 3.9 8.1 1.0
CB A:ALA1011 3.9 9.2 1.0
N A:ALA1011 4.0 8.0 1.0
C A:ALA1014 4.1 7.7 1.0
CA A:ALA1011 4.1 7.6 1.0
CB A:ALA1014 4.3 10.2 1.0
N A:ALA1014 4.3 7.6 1.0
CA A:ALA1014 4.4 7.8 1.0
CB B:ALA2014 4.6 8.9 1.0
N A:GLU1013 4.7 7.4 1.0
O A:ALA1011 4.8 9.3 1.0
CL A:CL1104 4.9 12.8 0.5

Copper binding site 4 out of 4 in 2xmk

Go back to Copper Binding Sites List in 2xmk
Copper binding site 4 out of 4 in the Visualising the Metal-Binding Versatility of Copper Trafficking Sites: ATX1 Side-to-Side (Anaerobic)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Visualising the Metal-Binding Versatility of Copper Trafficking Sites: ATX1 Side-to-Side (Anaerobic) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu2102

b:8.2
occ:1.00
SG B:CYS2015 2.2 8.1 1.0
SG A:CYS1015 2.2 8.0 1.0
CL A:CL1103 2.4 8.9 1.0
CU A:CU2101 3.0 10.0 1.0
CU B:CU1102 3.0 10.2 1.0
CB A:CYS1015 3.2 6.9 1.0
CB B:CYS2015 3.2 7.6 1.0
CA B:CYS2015 3.3 6.8 1.0
CA A:CYS1015 3.3 6.5 1.0
N A:CYS1015 3.4 6.6 1.0
N B:CYS2015 3.4 6.2 1.0
C B:ALA2014 4.0 7.1 1.0
C A:ALA1014 4.0 7.7 1.0
O B:ALA2014 4.3 8.0 1.0
O A:ALA1014 4.3 8.0 1.0
CB A:ALA1014 4.6 10.2 1.0
CB B:ALA2014 4.6 8.9 1.0
NE2 B:HIS2061 4.6 13.2 1.0
NE2 A:HIS1061 4.6 12.8 1.0
SG A:CYS1012 4.7 8.4 1.0
C B:CYS2015 4.7 6.3 1.0
CU B:CU1101 4.8 9.5 1.0
C A:CYS1015 4.8 6.7 1.0
SG B:CYS2012 4.8 8.2 1.0
CE1 A:HIS1061 4.8 13.8 1.0
CE1 B:HIS2061 4.9 14.0 1.0
CA A:ALA1014 4.9 7.8 1.0
CA B:ALA2014 4.9 7.5 1.0

Reference:

A.Badarau, S.J.Firbank, A.A.Mccarthy, M.J.Banfield, C.Dennison. Visualizing the Metal-Binding Versatility of Copper Trafficking Sites . Biochemistry V. 49 7798 2010.
ISSN: ISSN 0006-2960
PubMed: 20726513
DOI: 10.1021/BI101064W
Page generated: Mon Jul 14 01:33:27 2025

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy