Copper in PDB 2xmj: Visualising the Metal-Binding Versatility of Copper Trafficking Sites: ATX1 Side-to-Side (Aerobic)

The structure of Visualising the Metal-Binding Versatility of Copper Trafficking Sites: ATX1 Side-to-Side (Aerobic), PDB code: 2xmj was solved by A.Badarau, S.J.Firbank, A.A.Mccarthy, M.J.Banfield, C.Dennison, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	10.00 / 1.08
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	63.460, 41.654, 55.832, 90.00, 107.70, 90.00
R / Rfree (%)	n/a / 14.9

The structure of Visualising the Metal-Binding Versatility of Copper Trafficking Sites: ATX1 Side-to-Side (Aerobic) also contains other interesting chemical elements:

Chlorine	(Cl)	2 atoms
Sodium	(Na)	1 atom

The binding sites of Copper atom in the Visualising the Metal-Binding Versatility of Copper Trafficking Sites: ATX1 Side-to-Side (Aerobic) (pdb code 2xmj). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 4 binding sites of Copper where determined in the Visualising the Metal-Binding Versatility of Copper Trafficking Sites: ATX1 Side-to-Side (Aerobic), PDB code: 2xmj:
Jump to Copper binding site number: 1; 2; 3; 4;

Copper binding site 1 out of 4 in the Visualising the Metal-Binding Versatility of Copper Trafficking Sites: ATX1 Side-to-Side (Aerobic)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Visualising the Metal-Binding Versatility of Copper Trafficking Sites: ATX1 Side-to-Side (Aerobic) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu1065 b:5.5 occ:1.00 SG B:CYS12 2.2 5.4 1.0 SG A:CYS12 2.2 5.3 1.0 CL A:CL1067 2.4 6.8 0.5 CU B:CU1065 2.6 5.5 1.0 CU A:CU1068 2.7 5.4 1.0 CB A:CYS12 3.2 4.5 1.0 CB B:CYS12 3.2 5.0 1.0 O A:HOH2016 4.0 15.4 1.0 CB A:ALA11 4.4 5.6 1.0 CA A:CYS12 4.4 4.6 1.0 CA B:CYS12 4.4 5.2 1.0 N B:CYS12 4.4 5.1 1.0 N A:CYS12 4.4 4.6 1.0 CB B:ALA11 4.4 6.2 1.0 SG B:CYS15 4.5 5.0 1.0 SG A:CYS15 4.6 4.8 1.0 C B:ALA11 4.6 5.1 1.0 C A:ALA11 4.7 4.7 1.0 CU B:CU1066 4.7 5.1 1.0 CB B:ALA14 4.9 6.0 1.0 O B:HOH2033 4.9 12.2 1.0 O B:ALA11 4.9 6.0 1.0 O A:ALA11 4.9 5.5 1.0 CB A:ALA14 5.0 6.4 1.0 O A:HOH2038 5.0 11.1 1.0

Copper binding site 2 out of 4 in the Visualising the Metal-Binding Versatility of Copper Trafficking Sites: ATX1 Side-to-Side (Aerobic)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Visualising the Metal-Binding Versatility of Copper Trafficking Sites: ATX1 Side-to-Side (Aerobic) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu1068 b:5.4 occ:1.00 SG A:CYS12 2.2 5.3 1.0 SG A:CYS15 2.2 4.8 1.0 CU A:CU1065 2.7 5.5 1.0 CU B:CU1066 2.9 5.1 1.0 CU B:CU1065 3.0 5.5 1.0 CB A:CYS15 3.2 4.5 1.0 N A:CYS15 3.2 4.6 1.0 N A:CYS12 3.2 4.6 1.0 CB A:CYS12 3.3 4.5 1.0 O A:CYS12 3.6 4.7 1.0 CA A:CYS12 3.6 4.6 1.0 CA A:CYS15 3.7 4.8 1.0 C A:CYS12 3.8 4.6 1.0 SG B:CYS12 3.8 5.4 1.0 SG B:CYS15 3.9 5.0 1.0 CB A:ALA11 3.9 5.6 1.0 C A:ALA11 3.9 4.7 1.0 N A:ALA11 4.0 4.9 1.0 C A:ALA14 4.1 4.5 1.0 CA A:ALA11 4.2 4.8 1.0 CB A:ALA14 4.2 6.4 1.0 N A:ALA14 4.3 5.2 1.0 CA A:ALA14 4.4 5.4 1.0 CB B:ALA14 4.5 6.0 1.0 N A:GLU13 4.7 4.8 1.0 O A:ALA11 4.8 5.5 1.0 CL A:CL1067 4.8 6.8 0.5

Copper binding site 3 out of 4 in the Visualising the Metal-Binding Versatility of Copper Trafficking Sites: ATX1 Side-to-Side (Aerobic)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Visualising the Metal-Binding Versatility of Copper Trafficking Sites: ATX1 Side-to-Side (Aerobic) within 5.0Å range: probe atom residue distance (Å) B Occ B:Cu1065 b:5.5 occ:1.00 SG B:CYS15 2.2 5.0 1.0 SG B:CYS12 2.2 5.4 1.0 CU A:CU1065 2.6 5.5 1.0 CU B:CU1066 3.0 5.1 1.0 CU A:CU1068 3.0 5.4 1.0 N B:CYS15 3.1 4.7 1.0 CB B:CYS15 3.2 4.5 1.0 N B:CYS12 3.2 5.1 1.0 CB B:CYS12 3.3 5.0 1.0 O B:CYS12 3.6 5.0 1.0 CA B:CYS12 3.6 5.2 1.0 CA B:CYS15 3.7 4.4 1.0 C B:CYS12 3.8 4.8 1.0 SG A:CYS12 3.8 5.3 1.0 C B:ALA11 3.9 5.1 1.0 SG A:CYS15 3.9 4.8 1.0 CB B:ALA11 4.0 6.2 1.0 N B:ALA11 4.0 5.1 1.0 C B:ALA14 4.1 4.5 1.0 CA B:ALA11 4.1 5.4 1.0 CB B:ALA14 4.2 6.0 1.0 N B:ALA14 4.3 5.3 1.0 CA B:ALA14 4.4 5.3 1.0 CB A:ALA14 4.5 6.4 1.0 N B:GLU13 4.7 4.9 1.0 O B:ALA11 4.8 6.0 1.0 CL A:CL1067 4.8 6.8 0.5 C B:CYS15 5.0 4.7 1.0

Copper binding site 4 out of 4 in the Visualising the Metal-Binding Versatility of Copper Trafficking Sites: ATX1 Side-to-Side (Aerobic)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Visualising the Metal-Binding Versatility of Copper Trafficking Sites: ATX1 Side-to-Side (Aerobic) within 5.0Å range: probe atom residue distance (Å) B Occ B:Cu1066 b:5.1 occ:1.00 SG B:CYS15 2.2 5.0 1.0 SG A:CYS15 2.2 4.8 1.0 CL A:CL1066 2.4 5.1 1.0 CU A:CU1068 2.9 5.4 1.0 CU B:CU1065 3.0 5.5 1.0 CB B:CYS15 3.2 4.5 1.0 CB A:CYS15 3.2 4.5 1.0 CA B:CYS15 3.2 4.4 1.0 CA A:CYS15 3.3 4.8 1.0 N A:CYS15 3.4 4.6 1.0 N B:CYS15 3.4 4.7 1.0 C B:ALA14 4.0 4.5 1.0 C A:ALA14 4.0 4.5 1.0 O B:ALA14 4.2 5.4 1.0 O A:ALA14 4.3 4.9 1.0 CB A:ALA14 4.5 6.4 1.0 CB B:ALA14 4.5 6.0 1.0 NE2 A:HIS61 4.6 8.9 1.0 C B:CYS15 4.7 4.7 1.0 SG A:CYS12 4.7 5.3 1.0 NE2 B:HIS61 4.7 10.5 1.0 CU A:CU1065 4.7 5.5 1.0 C A:CYS15 4.7 4.9 1.0 SG B:CYS12 4.7 5.4 1.0 CE1 B:HIS61 4.8 11.2 1.0 CE1 A:HIS61 4.8 10.0 1.0 CA A:ALA14 4.8 5.4 1.0 CA B:ALA14 4.9 5.3 1.0

A.Badarau, S.J.Firbank, A.A.Mccarthy, M.J.Banfield, C.Dennison. Visualizing the Metal-Binding Versatility of Copper Trafficking Sites . Biochemistry V. 49 7798 2010.
ISSN: ISSN 0006-2960
PubMed: 20726513
DOI: 10.1021/BI101064W