Atomistry » Copper » PDB 2vr7-2xv0 » 2xla
Atomistry »
  Copper »
    PDB 2vr7-2xv0 »
      2xla »

Copper in PDB 2xla: Structure and Metal-Loading of A Soluble Periplasm Cupro-Protein: Cu- Cuca-Closed

Protein crystallography data

The structure of Structure and Metal-Loading of A Soluble Periplasm Cupro-Protein: Cu- Cuca-Closed, PDB code: 2xla was solved by K.J.Waldron, S.J.Firbank, S.J.Dainty, M.Perez-Rama, S.Tottey, N.J.Robinson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.42 / 1.93
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 50.310, 72.510, 262.100, 90.00, 90.00, 90.00
R / Rfree (%) 16.1 / 20.3

Copper Binding Sites:

The binding sites of Copper atom in the Structure and Metal-Loading of A Soluble Periplasm Cupro-Protein: Cu- Cuca-Closed (pdb code 2xla). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 4 binding sites of Copper where determined in the Structure and Metal-Loading of A Soluble Periplasm Cupro-Protein: Cu- Cuca-Closed, PDB code: 2xla:
Jump to Copper binding site number: 1; 2; 3; 4;

Copper binding site 1 out of 4 in 2xla

Go back to Copper Binding Sites List in 2xla
Copper binding site 1 out of 4 in the Structure and Metal-Loading of A Soluble Periplasm Cupro-Protein: Cu- Cuca-Closed


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Structure and Metal-Loading of A Soluble Periplasm Cupro-Protein: Cu- Cuca-Closed within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu1298

b:4.9
occ:1.00
NE2 A:HIS119 2.1 5.1 1.0
NE2 A:HIS117 2.1 4.2 1.0
OE1 A:GLU124 2.1 12.0 1.0
NE2 A:HIS178 2.2 9.7 1.0
O A:HOH2318 2.2 25.3 1.0
O A:HOH2080 2.7 25.8 1.0
CD2 A:HIS119 2.9 4.2 1.0
CD2 A:HIS117 3.0 5.6 1.0
CD A:GLU124 3.1 8.5 1.0
CD2 A:HIS178 3.1 7.9 1.0
CE1 A:HIS119 3.1 8.2 1.0
CE1 A:HIS117 3.2 8.4 1.0
CE1 A:HIS178 3.2 10.1 1.0
OE2 A:GLU124 3.4 9.0 1.0
O A:HOH2319 3.9 18.4 1.0
CG A:HIS119 4.1 5.3 1.0
CG A:HIS117 4.2 5.9 1.0
ND1 A:HIS119 4.2 6.4 1.0
N2 A:URE1299 4.2 13.6 1.0
ND1 A:HIS117 4.2 7.0 1.0
ND1 A:HIS178 4.3 9.9 1.0
CG A:HIS178 4.3 8.7 1.0
CG A:GLU124 4.5 6.0 1.0
CZ A:PHE126 4.5 8.7 1.0
NE1 A:TRP194 4.7 9.6 1.0
CB A:GLU124 4.8 4.0 1.0
CE1 A:PHE126 5.0 7.8 1.0

Copper binding site 2 out of 4 in 2xla

Go back to Copper Binding Sites List in 2xla
Copper binding site 2 out of 4 in the Structure and Metal-Loading of A Soluble Periplasm Cupro-Protein: Cu- Cuca-Closed


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Structure and Metal-Loading of A Soluble Periplasm Cupro-Protein: Cu- Cuca-Closed within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu1298

b:6.0
occ:1.00
NE2 B:HIS119 2.1 9.4 1.0
NE2 B:HIS117 2.1 6.4 1.0
NE2 B:HIS178 2.2 12.8 1.0
OE1 B:GLU124 2.2 13.5 1.0
O B:HOH2247 2.3 20.1 1.0
CD2 B:HIS119 3.0 8.6 1.0
CD2 B:HIS117 3.0 7.7 1.0
CE1 B:HIS117 3.1 8.3 1.0
CE1 B:HIS178 3.1 13.3 1.0
CE1 B:HIS119 3.2 8.1 1.0
CD B:GLU124 3.2 10.7 1.0
CD2 B:HIS178 3.2 11.7 1.0
O B:HOH2058 3.2 35.0 1.0
OE2 B:GLU124 3.5 14.2 1.0
O B:HOH2246 3.8 19.0 1.0
CG B:HIS119 4.2 8.3 1.0
CG B:HIS117 4.2 6.0 1.0
ND1 B:HIS117 4.2 6.5 1.0
ND1 B:HIS119 4.2 9.6 1.0
ND1 B:HIS178 4.3 12.1 1.0
CG B:HIS178 4.3 8.8 1.0
NE1 B:TRP194 4.4 8.8 1.0
CZ B:PHE126 4.4 7.4 1.0
N2 B:URE1299 4.5 15.2 1.0
CG B:GLU124 4.5 7.5 1.0
CB B:GLU124 4.8 6.7 1.0
CD1 B:TRP194 4.8 7.9 1.0
CE1 B:PHE126 4.9 8.7 1.0

Copper binding site 3 out of 4 in 2xla

Go back to Copper Binding Sites List in 2xla
Copper binding site 3 out of 4 in the Structure and Metal-Loading of A Soluble Periplasm Cupro-Protein: Cu- Cuca-Closed


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Structure and Metal-Loading of A Soluble Periplasm Cupro-Protein: Cu- Cuca-Closed within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cu1298

b:7.6
occ:1.00
NE2 C:HIS119 2.0 8.9 1.0
NE2 C:HIS117 2.1 11.4 1.0
NE2 C:HIS178 2.1 12.7 1.0
OE1 C:GLU124 2.2 12.9 1.0
O C:HOH2279 2.4 21.2 1.0
O C:HOH2071 2.5 26.1 1.0
CD2 C:HIS119 2.9 5.4 1.0
CD2 C:HIS117 3.0 10.7 1.0
CE1 C:HIS178 3.0 13.2 1.0
CD2 C:HIS178 3.1 11.4 1.0
CE1 C:HIS117 3.1 11.8 1.0
CE1 C:HIS119 3.1 7.8 1.0
CD C:GLU124 3.2 11.9 1.0
OE2 C:GLU124 3.5 16.3 1.0
O C:HOH2278 3.9 18.8 1.0
CG C:HIS119 4.1 7.3 1.0
CG C:HIS117 4.1 10.0 1.0
ND1 C:HIS117 4.2 10.8 1.0
ND1 C:HIS178 4.2 13.5 1.0
ND1 C:HIS119 4.2 7.6 1.0
CG C:HIS178 4.2 10.9 1.0
N1 C:URE1299 4.3 18.2 1.0
NE1 C:TRP194 4.5 8.4 1.0
CG C:GLU124 4.5 9.6 1.0
CZ C:PHE126 4.5 13.6 1.0
CB C:GLU124 4.8 8.6 1.0
CD1 C:TRP194 4.9 8.8 1.0
CE1 C:PHE126 5.0 13.0 1.0

Copper binding site 4 out of 4 in 2xla

Go back to Copper Binding Sites List in 2xla
Copper binding site 4 out of 4 in the Structure and Metal-Loading of A Soluble Periplasm Cupro-Protein: Cu- Cuca-Closed


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Structure and Metal-Loading of A Soluble Periplasm Cupro-Protein: Cu- Cuca-Closed within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cu1298

b:7.8
occ:1.00
O D:HOH2047 1.9 33.8 1.0
NE2 D:HIS117 2.1 10.8 1.0
NE2 D:HIS119 2.1 8.2 1.0
OE1 D:GLU124 2.2 12.6 1.0
NE2 D:HIS178 2.2 13.7 1.0
CD2 D:HIS119 2.9 9.8 1.0
CD2 D:HIS117 3.0 11.0 1.0
CE1 D:HIS117 3.1 10.5 1.0
CD2 D:HIS178 3.1 9.9 1.0
CE1 D:HIS119 3.2 9.9 1.0
CD D:GLU124 3.2 15.1 1.0
CE1 D:HIS178 3.2 13.6 1.0
OE2 D:GLU124 3.5 18.9 1.0
O D:HOH2228 3.9 22.5 1.0
CG D:HIS119 4.1 10.2 1.0
CG D:HIS117 4.1 8.7 1.0
ND1 D:HIS117 4.1 9.6 1.0
ND1 D:HIS119 4.2 9.3 1.0
CG D:HIS178 4.3 10.7 1.0
ND1 D:HIS178 4.3 14.4 1.0
N1 D:URE1299 4.4 17.8 1.0
NE1 D:TRP194 4.6 11.2 1.0
CG D:GLU124 4.6 12.8 1.0
CZ D:PHE126 4.6 14.0 1.0
CB D:GLU124 4.8 12.2 1.0

Reference:

K.J.Waldron, S.J.Firbank, S.J.Dainty, M.Perez-Rama, S.Tottey, N.J.Robinson. Structure and Metal Loading of A Soluble Periplasm Cuproprotein. J.Biol.Chem. V. 285 32504 2010.
ISSN: ISSN 0021-9258
PubMed: 20702411
DOI: 10.1074/JBC.M110.153080
Page generated: Sun Dec 13 11:07:35 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy