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Copper in PDB 2xla: Structure and Metal-Loading of A Soluble Periplasm Cupro-Protein: Cu- Cuca-Closed

Protein crystallography data

The structure of Structure and Metal-Loading of A Soluble Periplasm Cupro-Protein: Cu- Cuca-Closed, PDB code: 2xla was solved by K.J.Waldron, S.J.Firbank, S.J.Dainty, M.Perez-Rama, S.Tottey, N.J.Robinson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.42 / 1.93
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 50.310, 72.510, 262.100, 90.00, 90.00, 90.00
R / Rfree (%) 16.1 / 20.3

Copper Binding Sites:

The binding sites of Copper atom in the Structure and Metal-Loading of A Soluble Periplasm Cupro-Protein: Cu- Cuca-Closed (pdb code 2xla). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 4 binding sites of Copper where determined in the Structure and Metal-Loading of A Soluble Periplasm Cupro-Protein: Cu- Cuca-Closed, PDB code: 2xla:
Jump to Copper binding site number: 1; 2; 3; 4;

Copper binding site 1 out of 4 in 2xla

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Copper binding site 1 out of 4 in the Structure and Metal-Loading of A Soluble Periplasm Cupro-Protein: Cu- Cuca-Closed


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Structure and Metal-Loading of A Soluble Periplasm Cupro-Protein: Cu- Cuca-Closed within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu1298

b:4.9
occ:1.00
NE2 A:HIS119 2.1 5.1 1.0
NE2 A:HIS117 2.1 4.2 1.0
OE1 A:GLU124 2.1 12.0 1.0
NE2 A:HIS178 2.2 9.7 1.0
O A:HOH2318 2.2 25.3 1.0
O A:HOH2080 2.7 25.8 1.0
CD2 A:HIS119 2.9 4.2 1.0
CD2 A:HIS117 3.0 5.6 1.0
CD A:GLU124 3.1 8.5 1.0
CD2 A:HIS178 3.1 7.9 1.0
CE1 A:HIS119 3.1 8.2 1.0
CE1 A:HIS117 3.2 8.4 1.0
CE1 A:HIS178 3.2 10.1 1.0
OE2 A:GLU124 3.4 9.0 1.0
O A:HOH2319 3.9 18.4 1.0
CG A:HIS119 4.1 5.3 1.0
CG A:HIS117 4.2 5.9 1.0
ND1 A:HIS119 4.2 6.4 1.0
N2 A:URE1299 4.2 13.6 1.0
ND1 A:HIS117 4.2 7.0 1.0
ND1 A:HIS178 4.3 9.9 1.0
CG A:HIS178 4.3 8.7 1.0
CG A:GLU124 4.5 6.0 1.0
CZ A:PHE126 4.5 8.7 1.0
NE1 A:TRP194 4.7 9.6 1.0
CB A:GLU124 4.8 4.0 1.0
CE1 A:PHE126 5.0 7.8 1.0

Copper binding site 2 out of 4 in 2xla

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Copper binding site 2 out of 4 in the Structure and Metal-Loading of A Soluble Periplasm Cupro-Protein: Cu- Cuca-Closed


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Structure and Metal-Loading of A Soluble Periplasm Cupro-Protein: Cu- Cuca-Closed within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu1298

b:6.0
occ:1.00
NE2 B:HIS119 2.1 9.4 1.0
NE2 B:HIS117 2.1 6.4 1.0
NE2 B:HIS178 2.2 12.8 1.0
OE1 B:GLU124 2.2 13.5 1.0
O B:HOH2247 2.3 20.1 1.0
CD2 B:HIS119 3.0 8.6 1.0
CD2 B:HIS117 3.0 7.7 1.0
CE1 B:HIS117 3.1 8.3 1.0
CE1 B:HIS178 3.1 13.3 1.0
CE1 B:HIS119 3.2 8.1 1.0
CD B:GLU124 3.2 10.7 1.0
CD2 B:HIS178 3.2 11.7 1.0
O B:HOH2058 3.2 35.0 1.0
OE2 B:GLU124 3.5 14.2 1.0
O B:HOH2246 3.8 19.0 1.0
CG B:HIS119 4.2 8.3 1.0
CG B:HIS117 4.2 6.0 1.0
ND1 B:HIS117 4.2 6.5 1.0
ND1 B:HIS119 4.2 9.6 1.0
ND1 B:HIS178 4.3 12.1 1.0
CG B:HIS178 4.3 8.8 1.0
NE1 B:TRP194 4.4 8.8 1.0
CZ B:PHE126 4.4 7.4 1.0
N2 B:URE1299 4.5 15.2 1.0
CG B:GLU124 4.5 7.5 1.0
CB B:GLU124 4.8 6.7 1.0
CD1 B:TRP194 4.8 7.9 1.0
CE1 B:PHE126 4.9 8.7 1.0

Copper binding site 3 out of 4 in 2xla

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Copper binding site 3 out of 4 in the Structure and Metal-Loading of A Soluble Periplasm Cupro-Protein: Cu- Cuca-Closed


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Structure and Metal-Loading of A Soluble Periplasm Cupro-Protein: Cu- Cuca-Closed within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cu1298

b:7.6
occ:1.00
NE2 C:HIS119 2.0 8.9 1.0
NE2 C:HIS117 2.1 11.4 1.0
NE2 C:HIS178 2.1 12.7 1.0
OE1 C:GLU124 2.2 12.9 1.0
O C:HOH2279 2.4 21.2 1.0
O C:HOH2071 2.5 26.1 1.0
CD2 C:HIS119 2.9 5.4 1.0
CD2 C:HIS117 3.0 10.7 1.0
CE1 C:HIS178 3.0 13.2 1.0
CD2 C:HIS178 3.1 11.4 1.0
CE1 C:HIS117 3.1 11.8 1.0
CE1 C:HIS119 3.1 7.8 1.0
CD C:GLU124 3.2 11.9 1.0
OE2 C:GLU124 3.5 16.3 1.0
O C:HOH2278 3.9 18.8 1.0
CG C:HIS119 4.1 7.3 1.0
CG C:HIS117 4.1 10.0 1.0
ND1 C:HIS117 4.2 10.8 1.0
ND1 C:HIS178 4.2 13.5 1.0
ND1 C:HIS119 4.2 7.6 1.0
CG C:HIS178 4.2 10.9 1.0
N1 C:URE1299 4.3 18.2 1.0
NE1 C:TRP194 4.5 8.4 1.0
CG C:GLU124 4.5 9.6 1.0
CZ C:PHE126 4.5 13.6 1.0
CB C:GLU124 4.8 8.6 1.0
CD1 C:TRP194 4.9 8.8 1.0
CE1 C:PHE126 5.0 13.0 1.0

Copper binding site 4 out of 4 in 2xla

Go back to Copper Binding Sites List in 2xla
Copper binding site 4 out of 4 in the Structure and Metal-Loading of A Soluble Periplasm Cupro-Protein: Cu- Cuca-Closed


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Structure and Metal-Loading of A Soluble Periplasm Cupro-Protein: Cu- Cuca-Closed within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cu1298

b:7.8
occ:1.00
O D:HOH2047 1.9 33.8 1.0
NE2 D:HIS117 2.1 10.8 1.0
NE2 D:HIS119 2.1 8.2 1.0
OE1 D:GLU124 2.2 12.6 1.0
NE2 D:HIS178 2.2 13.7 1.0
CD2 D:HIS119 2.9 9.8 1.0
CD2 D:HIS117 3.0 11.0 1.0
CE1 D:HIS117 3.1 10.5 1.0
CD2 D:HIS178 3.1 9.9 1.0
CE1 D:HIS119 3.2 9.9 1.0
CD D:GLU124 3.2 15.1 1.0
CE1 D:HIS178 3.2 13.6 1.0
OE2 D:GLU124 3.5 18.9 1.0
O D:HOH2228 3.9 22.5 1.0
CG D:HIS119 4.1 10.2 1.0
CG D:HIS117 4.1 8.7 1.0
ND1 D:HIS117 4.1 9.6 1.0
ND1 D:HIS119 4.2 9.3 1.0
CG D:HIS178 4.3 10.7 1.0
ND1 D:HIS178 4.3 14.4 1.0
N1 D:URE1299 4.4 17.8 1.0
NE1 D:TRP194 4.6 11.2 1.0
CG D:GLU124 4.6 12.8 1.0
CZ D:PHE126 4.6 14.0 1.0
CB D:GLU124 4.8 12.2 1.0

Reference:

K.J.Waldron, S.J.Firbank, S.J.Dainty, M.Perez-Rama, S.Tottey, N.J.Robinson. Structure and Metal Loading of A Soluble Periplasm Cuproprotein. J.Biol.Chem. V. 285 32504 2010.
ISSN: ISSN 0021-9258
PubMed: 20702411
DOI: 10.1074/JBC.M110.153080
Page generated: Wed Oct 28 14:22:12 2020
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