Copper in PDB 2xji: Structure and Copper-Binding Properties of Methanobactins From Methylosinus Trichosporium OB3B
Enzymatic activity of Structure and Copper-Binding Properties of Methanobactins From Methylosinus Trichosporium OB3B
All present enzymatic activity of Structure and Copper-Binding Properties of Methanobactins From Methylosinus Trichosporium OB3B:
1.15.1.1;
Protein crystallography data
The structure of Structure and Copper-Binding Properties of Methanobactins From Methylosinus Trichosporium OB3B, PDB code: 2xji
was solved by
A.El-Ghazouani,
A.Basle,
S.J.Firbank,
C.W.Knapp,
J.Gray,
D.W.Graham,
C.Dennison,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
20.00 /
1.00
|
|
Space group
|
I 2 2 2
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
31.710,
39.570,
85.050,
90.00,
90.00,
90.00
|
|
R / Rfree (%)
|
11.4 /
12.9
|
Copper Binding Sites:
The binding sites of Copper atom in the Structure and Copper-Binding Properties of Methanobactins From Methylosinus Trichosporium OB3B
(pdb code 2xji). This binding sites where shown within
5.0 Angstroms radius around Copper atom.
In total 8 binding sites of Copper where determined in the
Structure and Copper-Binding Properties of Methanobactins From Methylosinus Trichosporium OB3B, PDB code: 2xji:
Jump to Copper binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Copper binding site 1 out
of 8 in 2xji
Go back to
Copper Binding Sites List in 2xji
Copper binding site 1 out
of 8 in the Structure and Copper-Binding Properties of Methanobactins From Methylosinus Trichosporium OB3B
 Mono view
 Stereo pair view
|
|
A full contact list of Copper with other atoms in the Cu binding
site number 1 of Structure and Copper-Binding Properties of Methanobactins From Methylosinus Trichosporium OB3B within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cu11
b:8.0
occ:1.00
|
N
|
A:BB91
|
2.0
|
7.0
|
1.0
|
|
N
|
A:BB97
|
2.0
|
8.1
|
1.0
|
|
SG
|
A:BB97
|
2.3
|
7.9
|
1.0
|
|
SG
|
A:BB91
|
2.4
|
8.0
|
1.0
|
|
CA
|
A:BB97
|
2.8
|
7.4
|
1.0
|
|
CA
|
A:BB91
|
2.9
|
7.4
|
1.0
|
|
CB
|
A:BB97
|
3.0
|
7.3
|
1.0
|
|
CB
|
A:BB91
|
3.0
|
7.0
|
1.0
|
|
C1
|
A:COI0
|
3.1
|
7.5
|
1.0
|
|
C3
|
A:COI0
|
3.2
|
12.1
|
0.6
|
|
C
|
A:PRO6
|
3.2
|
8.2
|
1.0
|
|
C3
|
A:COI0
|
3.5
|
9.4
|
0.4
|
|
C2
|
A:COI0
|
3.7
|
8.7
|
1.0
|
|
CA
|
A:PRO6
|
3.8
|
9.3
|
1.0
|
|
CA
|
A:TYR5
|
4.1
|
9.1
|
1.0
|
|
C
|
A:BB91
|
4.1
|
7.0
|
1.0
|
|
C
|
A:BB97
|
4.1
|
9.4
|
1.0
|
|
SG
|
A:CYS4
|
4.2
|
10.5
|
1.0
|
|
O
|
B:HOH2012
|
4.2
|
11.7
|
1.0
|
|
O2
|
A:COI0
|
4.2
|
7.7
|
1.0
|
|
N
|
A:SER8
|
4.3
|
8.0
|
1.0
|
|
N
|
A:GLY2
|
4.4
|
7.7
|
1.0
|
|
N
|
A:TYR5
|
4.4
|
10.1
|
1.0
|
|
O
|
A:CYS4
|
4.4
|
10.8
|
1.0
|
|
C4
|
A:COI0
|
4.4
|
11.8
|
0.4
|
|
C
|
A:CYS4
|
4.5
|
10.1
|
1.0
|
|
C4
|
A:COI0
|
4.5
|
11.1
|
0.6
|
|
C5
|
A:COI0
|
4.8
|
15.5
|
0.4
|
|
CB
|
A:TYR5
|
4.9
|
9.5
|
1.0
|
|
CD2
|
A:TYR5
|
4.9
|
9.4
|
1.0
|
|
CA
|
B:BB91
|
4.9
|
7.3
|
1.0
|
|
N
|
A:PRO6
|
4.9
|
9.6
|
1.0
|
|
CB
|
B:BB91
|
5.0
|
7.4
|
1.0
|
|
O3
|
A:COI0
|
5.0
|
10.4
|
1.0
|
|
Copper binding site 2 out
of 8 in 2xji
Go back to
Copper Binding Sites List in 2xji
Copper binding site 2 out
of 8 in the Structure and Copper-Binding Properties of Methanobactins From Methylosinus Trichosporium OB3B
 Mono view
 Stereo pair view
|
|
A full contact list of Copper with other atoms in the Cu binding
site number 2 of Structure and Copper-Binding Properties of Methanobactins From Methylosinus Trichosporium OB3B within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cu11
b:8.2
occ:1.00
|
N
|
B:BB91
|
2.0
|
7.5
|
1.0
|
|
N
|
B:BB97
|
2.0
|
8.5
|
1.0
|
|
SG
|
B:BB97
|
2.3
|
8.1
|
1.0
|
|
SG
|
B:BB91
|
2.5
|
8.0
|
1.0
|
|
CA
|
B:BB97
|
2.8
|
8.4
|
1.0
|
|
CA
|
B:BB91
|
2.9
|
7.3
|
1.0
|
|
CB
|
B:BB97
|
3.0
|
7.8
|
1.0
|
|
C1
|
B:COI0
|
3.0
|
8.2
|
1.0
|
|
CB
|
B:BB91
|
3.1
|
7.4
|
1.0
|
|
C
|
B:PRO6
|
3.2
|
9.0
|
1.0
|
|
O3
|
B:COI0
|
3.2
|
10.0
|
1.0
|
|
C2
|
B:COI0
|
3.6
|
8.8
|
1.0
|
|
CA
|
B:PRO6
|
3.8
|
9.3
|
1.0
|
|
O
|
C:HOH2001
|
3.9
|
10.3
|
1.0
|
|
C
|
B:BB91
|
4.1
|
7.3
|
1.0
|
|
C
|
B:BB97
|
4.2
|
9.1
|
1.0
|
|
O2
|
B:COI0
|
4.2
|
8.3
|
1.0
|
|
CA
|
B:TYR5
|
4.3
|
9.5
|
0.5
|
|
N
|
B:SER8
|
4.3
|
8.4
|
1.0
|
|
SG
|
B:CYS4
|
4.4
|
9.5
|
1.0
|
|
O
|
B:HOH2012
|
4.4
|
11.7
|
1.0
|
|
O
|
B:CYS4
|
4.4
|
10.4
|
1.0
|
|
CA
|
B:TYR5
|
4.4
|
9.7
|
0.5
|
|
N
|
B:GLY2
|
4.4
|
7.8
|
1.0
|
|
CA
|
A:BB91
|
4.5
|
7.4
|
1.0
|
|
C
|
A:BB91
|
4.6
|
7.0
|
1.0
|
|
C
|
B:CYS4
|
4.7
|
9.7
|
1.0
|
|
N
|
B:TYR5
|
4.7
|
9.7
|
1.0
|
|
N
|
A:BB91
|
4.8
|
7.0
|
1.0
|
|
O2
|
A:COI0
|
4.8
|
7.7
|
1.0
|
|
CB
|
A:BB91
|
4.8
|
7.0
|
1.0
|
|
C1
|
A:COI0
|
4.9
|
7.5
|
1.0
|
|
O
|
A:BB91
|
4.9
|
8.0
|
1.0
|
|
CB
|
B:PRO6
|
5.0
|
10.6
|
1.0
|
|
N
|
B:PRO6
|
5.0
|
9.3
|
1.0
|
|
CB
|
B:TYR5
|
5.0
|
8.6
|
0.5
|
|
CD1
|
B:TYR5
|
5.0
|
9.4
|
0.5
|
|
Copper binding site 3 out
of 8 in 2xji
Go back to
Copper Binding Sites List in 2xji
Copper binding site 3 out
of 8 in the Structure and Copper-Binding Properties of Methanobactins From Methylosinus Trichosporium OB3B
 Mono view
 Stereo pair view
|
|
A full contact list of Copper with other atoms in the Cu binding
site number 3 of Structure and Copper-Binding Properties of Methanobactins From Methylosinus Trichosporium OB3B within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cu11
b:6.0
occ:0.62
|
CU
|
C:CU11
|
0.0
|
6.0
|
0.6
|
|
CU
|
C:CU11
|
0.5
|
8.0
|
0.4
|
|
N
|
C:BB97
|
2.0
|
8.1
|
0.4
|
|
N
|
C:BB97
|
2.0
|
5.8
|
0.6
|
|
N
|
C:BB91
|
2.0
|
5.6
|
0.6
|
|
SG
|
C:BB91
|
2.1
|
9.0
|
0.4
|
|
SG
|
C:BB97
|
2.3
|
5.9
|
0.6
|
|
N
|
C:BB91
|
2.3
|
7.1
|
0.4
|
|
SG
|
C:BB97
|
2.3
|
8.6
|
0.4
|
|
SG
|
C:BB91
|
2.5
|
5.2
|
0.6
|
|
CA
|
C:BB97
|
2.6
|
7.3
|
0.4
|
|
CA
|
C:BB97
|
2.8
|
5.9
|
0.6
|
|
CB
|
C:BB97
|
2.9
|
7.1
|
0.4
|
|
CA
|
C:BB91
|
3.0
|
4.8
|
0.6
|
|
CB
|
C:BB97
|
3.0
|
6.5
|
0.6
|
|
CA
|
C:BB91
|
3.0
|
6.5
|
0.4
|
|
CB
|
C:BB91
|
3.0
|
7.9
|
0.4
|
|
C
|
C:PRO6
|
3.1
|
7.9
|
0.4
|
|
C1
|
C:COI0
|
3.1
|
5.3
|
0.6
|
|
CB
|
C:BB91
|
3.1
|
4.2
|
0.6
|
|
C
|
C:PRO6
|
3.2
|
6.9
|
0.6
|
|
O3
|
C:COI0
|
3.2
|
5.9
|
0.6
|
|
C1
|
C:COI0
|
3.4
|
7.3
|
0.4
|
|
C2
|
C:COI0
|
3.7
|
6.0
|
0.6
|
|
O3
|
C:COI0
|
3.7
|
9.8
|
0.4
|
|
CA
|
C:PRO6
|
3.8
|
7.5
|
0.6
|
|
CA
|
C:PRO6
|
3.8
|
8.8
|
0.4
|
|
SG
|
C:CYS4
|
3.9
|
11.1
|
0.4
|
|
O
|
C:CYS4
|
3.9
|
8.0
|
0.4
|
|
C
|
C:BB97
|
3.9
|
7.5
|
0.4
|
|
C2
|
C:COI0
|
4.0
|
8.1
|
0.4
|
|
CA
|
C:TYR5
|
4.1
|
8.1
|
0.4
|
|
O
|
C:HOH2001
|
4.1
|
10.3
|
1.0
|
|
C
|
C:CYS4
|
4.1
|
6.8
|
0.4
|
|
C
|
C:BB97
|
4.1
|
7.8
|
0.6
|
|
N
|
C:SER8
|
4.2
|
7.7
|
0.4
|
|
CA
|
C:TYR5
|
4.2
|
8.6
|
0.6
|
|
N
|
C:TYR5
|
4.2
|
8.9
|
0.4
|
|
C
|
C:BB91
|
4.2
|
4.5
|
0.6
|
|
O2
|
C:COI0
|
4.3
|
5.2
|
0.6
|
|
N
|
C:GLY2
|
4.3
|
7.6
|
0.4
|
|
N
|
C:SER8
|
4.3
|
6.3
|
0.6
|
|
C
|
C:BB91
|
4.3
|
6.7
|
0.4
|
|
SG
|
C:CYS4
|
4.3
|
8.1
|
0.6
|
|
O
|
D:HOH2015
|
4.3
|
11.6
|
1.0
|
|
N
|
C:GLY2
|
4.5
|
4.5
|
0.6
|
|
O
|
C:CYS4
|
4.5
|
7.9
|
0.6
|
|
O2
|
C:COI0
|
4.5
|
8.1
|
0.4
|
|
N
|
C:TYR5
|
4.6
|
8.2
|
0.6
|
|
CA
|
D:BB91
|
4.6
|
5.7
|
0.8
|
|
C
|
C:CYS4
|
4.7
|
7.0
|
0.6
|
|
C
|
D:BB91
|
4.7
|
6.6
|
0.8
|
|
N
|
C:PRO6
|
4.8
|
8.6
|
0.4
|
|
CB
|
D:BB91
|
4.8
|
5.2
|
0.8
|
|
C
|
C:TYR5
|
4.8
|
8.3
|
0.4
|
|
CB
|
C:TYR5
|
4.9
|
9.1
|
0.6
|
|
N
|
D:BB91
|
4.9
|
6.3
|
0.8
|
|
CB
|
C:PRO6
|
4.9
|
9.0
|
0.6
|
|
O
|
C:BB97
|
5.0
|
9.2
|
0.4
|
|
N
|
C:PRO6
|
5.0
|
9.9
|
0.6
|
|
CA
|
C:CYS4
|
5.0
|
8.3
|
0.4
|
|
Copper binding site 4 out
of 8 in 2xji
Go back to
Copper Binding Sites List in 2xji
Copper binding site 4 out
of 8 in the Structure and Copper-Binding Properties of Methanobactins From Methylosinus Trichosporium OB3B
 Mono view
 Stereo pair view
|
|
A full contact list of Copper with other atoms in the Cu binding
site number 4 of Structure and Copper-Binding Properties of Methanobactins From Methylosinus Trichosporium OB3B within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cu11
b:8.0
occ:0.38
|
CU
|
C:CU11
|
0.0
|
8.0
|
0.4
|
|
CU
|
C:CU11
|
0.5
|
6.0
|
0.6
|
|
N
|
C:BB91
|
1.7
|
5.6
|
0.6
|
|
N
|
C:BB91
|
1.9
|
7.1
|
0.4
|
|
N
|
C:BB97
|
2.1
|
8.1
|
0.4
|
|
N
|
C:BB97
|
2.2
|
5.8
|
0.6
|
|
SG
|
C:BB97
|
2.4
|
8.6
|
0.4
|
|
SG
|
C:BB91
|
2.4
|
9.0
|
0.4
|
|
SG
|
C:BB97
|
2.5
|
5.9
|
0.6
|
|
C1
|
C:COI0
|
2.7
|
5.3
|
0.6
|
|
O3
|
C:COI0
|
2.8
|
5.9
|
0.6
|
|
CA
|
C:BB91
|
2.8
|
6.5
|
0.4
|
|
SG
|
C:BB91
|
2.8
|
5.2
|
0.6
|
|
CA
|
C:BB91
|
2.8
|
4.8
|
0.6
|
|
CA
|
C:BB97
|
2.8
|
7.3
|
0.4
|
|
C1
|
C:COI0
|
2.9
|
7.3
|
0.4
|
|
CB
|
C:BB91
|
3.0
|
7.9
|
0.4
|
|
CB
|
C:BB97
|
3.1
|
7.1
|
0.4
|
|
CA
|
C:BB97
|
3.1
|
5.9
|
0.6
|
|
C2
|
C:COI0
|
3.2
|
6.0
|
0.6
|
|
C
|
C:PRO6
|
3.2
|
7.9
|
0.4
|
|
CB
|
C:BB91
|
3.2
|
4.2
|
0.6
|
|
O3
|
C:COI0
|
3.2
|
9.8
|
0.4
|
|
CB
|
C:BB97
|
3.3
|
6.5
|
0.6
|
|
C
|
C:PRO6
|
3.4
|
6.9
|
0.6
|
|
C2
|
C:COI0
|
3.5
|
8.1
|
0.4
|
|
CA
|
C:PRO6
|
3.8
|
8.8
|
0.4
|
|
O
|
C:HOH2001
|
3.8
|
10.3
|
1.0
|
|
CA
|
C:PRO6
|
3.8
|
7.5
|
0.6
|
|
O2
|
C:COI0
|
3.9
|
5.2
|
0.6
|
|
C
|
C:BB91
|
3.9
|
4.5
|
0.6
|
|
C
|
C:BB91
|
4.0
|
6.7
|
0.4
|
|
O2
|
C:COI0
|
4.1
|
8.1
|
0.4
|
|
C
|
C:BB97
|
4.2
|
7.5
|
0.4
|
|
CA
|
C:TYR5
|
4.3
|
8.1
|
0.4
|
|
N
|
C:GLY2
|
4.3
|
7.6
|
0.4
|
|
C
|
D:BB91
|
4.3
|
6.6
|
0.8
|
|
CA
|
D:BB91
|
4.3
|
5.7
|
0.8
|
|
O
|
C:CYS4
|
4.4
|
8.0
|
0.4
|
|
SG
|
C:CYS4
|
4.4
|
11.1
|
0.4
|
|
N
|
C:SER8
|
4.4
|
7.7
|
0.4
|
|
C
|
C:BB97
|
4.4
|
7.8
|
0.6
|
|
CA
|
C:TYR5
|
4.4
|
8.6
|
0.6
|
|
N
|
C:TYR5
|
4.5
|
8.9
|
0.4
|
|
N
|
C:GLY2
|
4.5
|
4.5
|
0.6
|
|
C
|
C:CYS4
|
4.6
|
6.8
|
0.4
|
|
O2
|
D:COI0
|
4.6
|
6.8
|
0.8
|
|
N
|
C:SER8
|
4.6
|
6.3
|
0.6
|
|
O
|
D:HOH2015
|
4.6
|
11.6
|
1.0
|
|
C
|
D:BB91
|
4.6
|
7.0
|
0.2
|
|
N
|
D:BB91
|
4.6
|
6.3
|
0.8
|
|
O
|
D:BB91
|
4.7
|
7.3
|
0.8
|
|
C3
|
C:COI0
|
4.7
|
6.0
|
0.6
|
|
CB
|
D:BB91
|
4.7
|
5.2
|
0.8
|
|
C1
|
D:COI0
|
4.7
|
7.2
|
0.8
|
|
CA
|
D:BB91
|
4.7
|
6.0
|
0.2
|
|
O2
|
D:COI0
|
4.8
|
7.8
|
0.2
|
|
SG
|
C:CYS4
|
4.8
|
8.1
|
0.6
|
|
O
|
D:BB91
|
4.9
|
8.4
|
0.2
|
|
N
|
C:PRO6
|
4.9
|
8.6
|
0.4
|
|
CB
|
C:PRO6
|
4.9
|
9.0
|
0.6
|
|
CD1
|
C:TYR5
|
4.9
|
8.5
|
0.6
|
|
O
|
C:CYS4
|
4.9
|
7.9
|
0.6
|
|
N
|
D:GLY2
|
4.9
|
6.2
|
0.8
|
|
N
|
C:TYR5
|
5.0
|
8.2
|
0.6
|
|
Copper binding site 5 out
of 8 in 2xji
Go back to
Copper Binding Sites List in 2xji
Copper binding site 5 out
of 8 in the Structure and Copper-Binding Properties of Methanobactins From Methylosinus Trichosporium OB3B
 Mono view
 Stereo pair view
|
|
A full contact list of Copper with other atoms in the Cu binding
site number 5 of Structure and Copper-Binding Properties of Methanobactins From Methylosinus Trichosporium OB3B within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cu11
b:6.1
occ:0.77
|
CU
|
D:CU11
|
0.0
|
6.1
|
0.8
|
|
CU
|
D:CU11
|
1.0
|
6.7
|
0.2
|
|
SG
|
D:BB97
|
1.7
|
6.4
|
0.2
|
|
N
|
D:BB91
|
1.9
|
6.3
|
0.8
|
|
N
|
D:BB97
|
2.0
|
4.9
|
0.8
|
|
SG
|
D:BB91
|
2.2
|
6.9
|
0.2
|
|
SG
|
D:BB97
|
2.3
|
5.8
|
0.8
|
|
SG
|
D:BB91
|
2.4
|
5.5
|
0.8
|
|
N
|
D:BB97
|
2.5
|
5.8
|
0.2
|
|
N
|
D:BB91
|
2.5
|
5.9
|
0.2
|
|
CB
|
D:BB97
|
2.7
|
6.5
|
0.2
|
|
CA
|
D:BB97
|
2.8
|
4.8
|
0.8
|
|
CA
|
D:BB91
|
2.9
|
5.7
|
0.8
|
|
CA
|
D:BB97
|
2.9
|
6.2
|
0.2
|
|
CB
|
D:BB97
|
3.0
|
5.3
|
0.8
|
|
C1
|
D:COI0
|
3.0
|
7.2
|
0.8
|
|
CB
|
D:BB91
|
3.1
|
5.2
|
0.8
|
|
C
|
D:PRO6
|
3.1
|
4.6
|
0.8
|
|
CB
|
D:BB91
|
3.2
|
6.4
|
0.2
|
|
CA
|
D:BB91
|
3.2
|
6.0
|
0.2
|
|
C3
|
D:COI0
|
3.6
|
12.8
|
0.8
|
|
C1
|
D:COI0
|
3.6
|
7.0
|
0.2
|
|
C
|
D:PRO6
|
3.7
|
5.9
|
0.2
|
|
C2
|
D:COI0
|
3.7
|
8.9
|
0.8
|
|
SG
|
D:CYS4
|
3.8
|
7.4
|
0.2
|
|
CA
|
D:PRO6
|
3.8
|
5.6
|
0.8
|
|
C3
|
D:COI0
|
3.9
|
8.8
|
0.2
|
|
N
|
D:SER8
|
3.9
|
7.7
|
0.2
|
|
CA
|
D:TYR5
|
4.0
|
5.8
|
0.8
|
|
C
|
D:BB91
|
4.1
|
6.6
|
0.8
|
|
C
|
D:BB97
|
4.1
|
5.9
|
0.8
|
|
O2
|
D:COI0
|
4.2
|
6.8
|
0.8
|
|
C2
|
D:COI0
|
4.2
|
8.0
|
0.2
|
|
O
|
D:HOH2015
|
4.3
|
11.6
|
1.0
|
|
SG
|
D:CYS4
|
4.3
|
6.9
|
0.8
|
|
N
|
D:SER8
|
4.3
|
6.0
|
0.8
|
|
C
|
D:BB97
|
4.3
|
7.2
|
0.2
|
|
N
|
D:GLY2
|
4.4
|
5.9
|
0.2
|
|
N
|
D:GLY2
|
4.4
|
6.2
|
0.8
|
|
N
|
D:TYR5
|
4.4
|
6.0
|
0.8
|
|
O
|
D:CYS4
|
4.4
|
6.9
|
0.8
|
|
C
|
D:BB91
|
4.4
|
7.0
|
0.2
|
|
CA
|
D:PRO6
|
4.5
|
6.2
|
0.2
|
|
CB
|
C:BB91
|
4.5
|
7.9
|
0.4
|
|
C
|
D:CYS4
|
4.5
|
6.1
|
0.8
|
|
O2
|
D:COI0
|
4.6
|
7.8
|
0.2
|
|
CA
|
D:TYR5
|
4.6
|
5.3
|
0.2
|
|
N
|
C:GLY2
|
4.6
|
7.6
|
0.4
|
|
N
|
D:TYR5
|
4.6
|
6.4
|
0.2
|
|
CA
|
C:BB91
|
4.6
|
6.5
|
0.4
|
|
C
|
D:CYS4
|
4.6
|
5.8
|
0.2
|
|
O
|
D:CYS4
|
4.7
|
6.5
|
0.2
|
|
CA
|
D:SER8
|
4.7
|
8.7
|
0.2
|
|
C6
|
F:COI0
|
4.7
|
28.0
|
1.0
|
|
SG
|
D:CYS9
|
4.8
|
8.4
|
0.2
|
|
CA
|
C:BB91
|
4.8
|
4.8
|
0.6
|
|
CB
|
D:TYR5
|
4.8
|
6.4
|
0.8
|
|
N
|
D:PRO6
|
4.8
|
5.7
|
0.8
|
|
N
|
D:CYS9
|
4.9
|
7.6
|
0.2
|
|
CB
|
C:BB91
|
4.9
|
4.2
|
0.6
|
|
C
|
C:BB91
|
4.9
|
6.7
|
0.4
|
|
C
|
D:TYR5
|
4.9
|
5.9
|
0.8
|
|
C4
|
D:COI0
|
5.0
|
13.0
|
0.8
|
|
CD1
|
D:TYR5
|
5.0
|
8.1
|
0.8
|
|
O3
|
D:COI0
|
5.0
|
7.9
|
0.8
|
|
N
|
C:BB91
|
5.0
|
7.1
|
0.4
|
|
Copper binding site 6 out
of 8 in 2xji
Go back to
Copper Binding Sites List in 2xji
Copper binding site 6 out
of 8 in the Structure and Copper-Binding Properties of Methanobactins From Methylosinus Trichosporium OB3B
 Mono view
 Stereo pair view
|
|
A full contact list of Copper with other atoms in the Cu binding
site number 6 of Structure and Copper-Binding Properties of Methanobactins From Methylosinus Trichosporium OB3B within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cu11
b:6.7
occ:0.23
|
CU
|
D:CU11
|
0.0
|
6.7
|
0.2
|
|
CU
|
D:CU11
|
1.0
|
6.1
|
0.8
|
|
N
|
D:BB91
|
1.7
|
6.3
|
0.8
|
|
N
|
D:BB91
|
1.9
|
5.9
|
0.2
|
|
N
|
D:BB97
|
2.0
|
5.8
|
0.2
|
|
N
|
D:BB97
|
2.0
|
4.9
|
0.8
|
|
SG
|
D:BB97
|
2.4
|
6.4
|
0.2
|
|
SG
|
D:BB91
|
2.4
|
6.9
|
0.2
|
|
C1
|
D:COI0
|
2.5
|
7.2
|
0.8
|
|
C
|
D:PRO6
|
2.7
|
4.6
|
0.8
|
|
CA
|
D:BB91
|
2.8
|
5.7
|
0.8
|
|
CA
|
D:BB97
|
2.8
|
6.2
|
0.2
|
|
CA
|
D:BB91
|
2.8
|
6.0
|
0.2
|
|
C3
|
D:COI0
|
2.9
|
12.8
|
0.8
|
|
C1
|
D:COI0
|
3.0
|
7.0
|
0.2
|
|
SG
|
D:BB91
|
3.0
|
5.5
|
0.8
|
|
C
|
D:PRO6
|
3.0
|
5.9
|
0.2
|
|
CA
|
D:PRO6
|
3.0
|
5.6
|
0.8
|
|
CB
|
D:BB91
|
3.1
|
6.4
|
0.2
|
|
CA
|
D:BB97
|
3.1
|
4.8
|
0.8
|
|
C2
|
D:COI0
|
3.1
|
8.9
|
0.8
|
|
CB
|
D:BB97
|
3.1
|
6.5
|
0.2
|
|
SG
|
D:BB97
|
3.2
|
5.8
|
0.8
|
|
CB
|
D:BB91
|
3.3
|
5.2
|
0.8
|
|
C3
|
D:COI0
|
3.3
|
8.8
|
0.2
|
|
C2
|
D:COI0
|
3.6
|
8.0
|
0.2
|
|
CA
|
D:PRO6
|
3.6
|
6.2
|
0.2
|
|
CB
|
D:BB97
|
3.6
|
5.3
|
0.8
|
|
CA
|
D:TYR5
|
3.7
|
5.8
|
0.8
|
|
O2
|
D:COI0
|
3.7
|
6.8
|
0.8
|
|
C
|
D:BB91
|
3.8
|
6.6
|
0.8
|
|
CA
|
D:TYR5
|
4.0
|
5.3
|
0.2
|
|
C
|
D:BB91
|
4.1
|
7.0
|
0.2
|
|
O2
|
D:COI0
|
4.1
|
7.8
|
0.2
|
|
CD1
|
D:TYR5
|
4.1
|
8.1
|
0.8
|
|
C
|
D:BB97
|
4.2
|
7.2
|
0.2
|
|
C4
|
D:COI0
|
4.2
|
13.0
|
0.8
|
|
CB
|
D:PRO6
|
4.2
|
7.5
|
0.8
|
|
N
|
D:PRO6
|
4.2
|
5.7
|
0.8
|
|
C
|
D:BB97
|
4.2
|
5.9
|
0.8
|
|
CB
|
D:TYR5
|
4.3
|
6.4
|
0.8
|
|
SG
|
D:CYS4
|
4.3
|
7.4
|
0.2
|
|
N
|
D:TYR5
|
4.4
|
6.4
|
0.2
|
|
N
|
D:TYR5
|
4.4
|
6.0
|
0.8
|
|
O3
|
D:COI0
|
4.4
|
7.9
|
0.8
|
|
N
|
D:GLY2
|
4.4
|
5.9
|
0.2
|
|
N
|
D:SER8
|
4.4
|
7.7
|
0.2
|
|
C
|
D:TYR5
|
4.5
|
5.9
|
0.8
|
|
C4
|
D:COI0
|
4.5
|
14.7
|
0.2
|
|
C5
|
D:COI0
|
4.5
|
17.6
|
0.2
|
|
O
|
D:CYS4
|
4.5
|
6.5
|
0.2
|
|
C5
|
D:COI0
|
4.5
|
16.9
|
0.8
|
|
O
|
D:CYS4
|
4.5
|
6.9
|
0.8
|
|
C
|
D:CYS4
|
4.6
|
5.8
|
0.2
|
|
CG
|
D:TYR5
|
4.6
|
6.8
|
0.8
|
|
N
|
D:GLY2
|
4.6
|
6.2
|
0.8
|
|
C
|
D:CYS4
|
4.7
|
6.1
|
0.8
|
|
C6
|
F:COI0
|
4.7
|
28.0
|
1.0
|
|
CB
|
D:TYR5
|
4.8
|
6.1
|
0.2
|
|
CB
|
D:PRO6
|
4.8
|
7.7
|
0.2
|
|
N
|
D:PRO6
|
4.9
|
7.3
|
0.2
|
|
CD1
|
D:TYR5
|
4.9
|
8.7
|
0.2
|
|
C6
|
D:COI0
|
4.9
|
19.3
|
0.8
|
|
O3
|
D:COI0
|
4.9
|
15.3
|
0.2
|
|
C
|
D:TYR5
|
4.9
|
5.2
|
0.2
|
|
N
|
D:SER8
|
5.0
|
6.0
|
0.8
|
|
CA
|
C:BB91
|
5.0
|
6.5
|
0.4
|
|
O
|
D:BB91
|
5.0
|
7.3
|
0.8
|
|
Copper binding site 7 out
of 8 in 2xji
Go back to
Copper Binding Sites List in 2xji
Copper binding site 7 out
of 8 in the Structure and Copper-Binding Properties of Methanobactins From Methylosinus Trichosporium OB3B
 Mono view
 Stereo pair view
|
|
A full contact list of Copper with other atoms in the Cu binding
site number 7 of Structure and Copper-Binding Properties of Methanobactins From Methylosinus Trichosporium OB3B within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Cu11
b:6.3
occ:1.00
|
N
|
E:BB91
|
2.0
|
6.4
|
1.0
|
|
N
|
E:BB97
|
2.0
|
5.9
|
1.0
|
|
SG
|
E:BB97
|
2.3
|
6.0
|
1.0
|
|
SG
|
E:BB91
|
2.4
|
5.6
|
1.0
|
|
CA
|
E:BB97
|
2.8
|
5.8
|
1.0
|
|
CA
|
E:BB91
|
2.9
|
5.9
|
1.0
|
|
CB
|
E:BB97
|
3.0
|
5.1
|
1.0
|
|
CB
|
E:BB91
|
3.0
|
5.8
|
1.0
|
|
C1
|
E:COI0
|
3.1
|
7.0
|
1.0
|
|
C
|
E:PRO6
|
3.2
|
6.3
|
1.0
|
|
C3
|
E:COI0
|
3.4
|
8.1
|
1.0
|
|
C2
|
E:COI0
|
3.7
|
9.1
|
1.0
|
|
CA
|
E:PRO6
|
3.9
|
7.1
|
1.0
|
|
C
|
E:BB91
|
4.1
|
7.0
|
1.0
|
|
C
|
E:BB97
|
4.1
|
5.9
|
1.0
|
|
O2
|
E:COI0
|
4.2
|
7.5
|
1.0
|
|
CA
|
E:TYR5
|
4.2
|
6.5
|
1.0
|
|
N
|
E:SER8
|
4.3
|
5.3
|
1.0
|
|
N
|
E:GLY2
|
4.4
|
6.5
|
1.0
|
|
O
|
F:HOH2015
|
4.4
|
8.2
|
1.0
|
|
O
|
E:CYS4
|
4.5
|
8.1
|
1.0
|
|
SG
|
E:CYS4
|
4.5
|
5.9
|
1.0
|
|
N
|
E:TYR5
|
4.6
|
6.7
|
1.0
|
|
CA
|
F:BB91
|
4.6
|
7.5
|
1.0
|
|
C
|
E:CYS4
|
4.6
|
6.3
|
1.0
|
|
N
|
F:BB91
|
4.7
|
7.8
|
1.0
|
|
C1
|
F:COI0
|
4.7
|
10.1
|
1.0
|
|
C
|
F:BB91
|
4.7
|
10.2
|
1.0
|
|
O2
|
F:COI0
|
4.8
|
13.1
|
1.0
|
|
C4
|
E:COI0
|
4.8
|
12.1
|
1.0
|
|
N
|
E:PRO6
|
5.0
|
7.5
|
1.0
|
|
CB
|
E:TYR5
|
5.0
|
7.0
|
1.0
|
|
Copper binding site 8 out
of 8 in 2xji
Go back to
Copper Binding Sites List in 2xji
Copper binding site 8 out
of 8 in the Structure and Copper-Binding Properties of Methanobactins From Methylosinus Trichosporium OB3B
 Mono view
 Stereo pair view
|
|
A full contact list of Copper with other atoms in the Cu binding
site number 8 of Structure and Copper-Binding Properties of Methanobactins From Methylosinus Trichosporium OB3B within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Cu11
b:7.1
occ:1.00
|
N
|
F:BB91
|
2.0
|
7.8
|
1.0
|
|
N
|
F:BB97
|
2.0
|
6.7
|
1.0
|
|
SG
|
F:BB97
|
2.3
|
7.0
|
1.0
|
|
SG
|
F:BB91
|
2.4
|
6.3
|
1.0
|
|
CA
|
F:BB97
|
2.8
|
7.3
|
1.0
|
|
CA
|
F:BB91
|
2.9
|
7.5
|
1.0
|
|
CB
|
F:BB97
|
3.0
|
6.7
|
1.0
|
|
CB
|
F:BB91
|
3.0
|
6.5
|
1.0
|
|
C1
|
F:COI0
|
3.1
|
10.1
|
1.0
|
|
C
|
F:PRO6
|
3.2
|
7.3
|
1.0
|
|
C3
|
F:COI0
|
3.3
|
16.0
|
1.0
|
|
C2
|
F:COI0
|
3.7
|
12.3
|
1.0
|
|
CA
|
F:PRO6
|
3.8
|
8.1
|
1.0
|
|
O
|
F:HOH2015
|
4.1
|
8.2
|
1.0
|
|
C
|
F:BB91
|
4.1
|
10.2
|
1.0
|
|
C
|
F:BB97
|
4.1
|
8.6
|
1.0
|
|
O2
|
F:COI0
|
4.2
|
13.1
|
1.0
|
|
CA
|
F:TYR5
|
4.2
|
8.1
|
1.0
|
|
SG
|
F:CYS4
|
4.2
|
7.7
|
1.0
|
|
N
|
F:SER8
|
4.3
|
7.5
|
1.0
|
|
N
|
F:GLY2
|
4.4
|
7.2
|
1.0
|
|
O
|
F:CYS4
|
4.4
|
8.1
|
1.0
|
|
CD2
|
F:TYR5
|
4.5
|
11.5
|
1.0
|
|
N
|
F:TYR5
|
4.6
|
8.8
|
1.0
|
|
C4
|
F:COI0
|
4.6
|
19.8
|
1.0
|
|
C
|
F:CYS4
|
4.6
|
6.7
|
1.0
|
|
CB
|
F:TYR5
|
4.9
|
11.0
|
1.0
|
|
N
|
F:PRO6
|
4.9
|
8.8
|
1.0
|
|
O3
|
F:COI0
|
5.0
|
19.6
|
1.0
|
|
C6
|
F:COI0
|
5.0
|
28.0
|
1.0
|
|
CA
|
E:BB91
|
5.0
|
5.9
|
1.0
|
|
CB
|
E:BB91
|
5.0
|
5.8
|
1.0
|
|
Reference:
A.El Ghazouani,
A.Basle,
S.J.Firbank,
C.W.Knapp,
J.Gray,
D.W.Graham,
C.Dennison.
Copper-Binding Properties and Structures of Methanobactins From Methylosinus Trichosporium OB3B. Inorg.Chem. V. 50 1378 2011.
ISSN: ISSN 0020-1669
PubMed: 21254756
DOI: 10.1021/IC101965J
Page generated: Wed Jul 31 00:09:27 2024
|
