Copper in PDB 2xjh: Structure and Copper-Binding Properties of Methanobactins From Methylosinus Trichosporium OB3B

All present enzymatic activity of Structure and Copper-Binding Properties of Methanobactins From Methylosinus Trichosporium OB3B:
1.15.1.1;

The structure of Structure and Copper-Binding Properties of Methanobactins From Methylosinus Trichosporium OB3B, PDB code: 2xjh was solved by A.El-Ghazouani, A.Basle, S.J.Firbank, C.W.Knapp, J.Gray, D.W.Graham, C.Dennison, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 0.92
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	29.475, 29.475, 29.480, 90.00, 90.00, 90.00
R / Rfree (%)	12.5 / 14.1

The structure of Structure and Copper-Binding Properties of Methanobactins From Methylosinus Trichosporium OB3B also contains other interesting chemical elements:

Sodium

(Na)

3 atoms

The binding sites of Copper atom in the Structure and Copper-Binding Properties of Methanobactins From Methylosinus Trichosporium OB3B (pdb code 2xjh). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the Structure and Copper-Binding Properties of Methanobactins From Methylosinus Trichosporium OB3B, PDB code: 2xjh:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in the Structure and Copper-Binding Properties of Methanobactins From Methylosinus Trichosporium OB3B


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Structure and Copper-Binding Properties of Methanobactins From Methylosinus Trichosporium OB3B within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu1001 b:5.4 occ:1.00 N A:BB91 2.0 5.7 1.0 N A:BB97 2.0 5.6 1.0 SG A:BB97 2.3 6.0 1.0 SG A:BB91 2.4 5.1 1.0 CA A:BB97 2.9 5.5 1.0 CA A:BB91 2.9 5.0 1.0 CB A:BB97 3.0 5.8 1.0 CB A:BB91 3.0 5.0 1.0 C1 A:COI0 3.1 6.7 1.0 C A:PRO6 3.2 5.6 1.0 C3 A:COI0 3.5 6.6 1.0 C2 A:COI0 3.8 6.2 1.0 C4 A:COI0 3.8 6.8 1.0 CA A:PRO6 3.9 5.5 1.0 CA A:TYR5 4.0 5.2 1.0 SG A:CYS4 4.0 5.7 1.0 CG A:MET10 4.1 15.9 0.6 C A:BB91 4.1 6.0 1.0 C A:BB97 4.2 6.4 1.0 CG A:MET10 4.2 18.0 0.4 O A:CYS4 4.2 5.8 1.0 C6 A:COI0 4.2 7.6 1.0 O2 A:COI0 4.3 6.5 1.0 N A:SER8 4.3 6.5 1.0 N A:TYR5 4.4 5.1 1.0 C A:CYS4 4.4 5.5 1.0 N A:GLY2 4.4 5.3 1.0 OG B:SER8 4.5 7.9 0.5 CD2 A:TYR5 4.5 6.5 1.0 CB A:TYR5 4.7 5.5 1.0 N A:PRO6 4.9 5.3 1.0 CB B:SER8 5.0 8.2 0.5 CB A:MET10 5.0 14.1 0.6 C A:TYR5 5.0 5.2 1.0

Copper binding site 2 out of 2 in the Structure and Copper-Binding Properties of Methanobactins From Methylosinus Trichosporium OB3B


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Structure and Copper-Binding Properties of Methanobactins From Methylosinus Trichosporium OB3B within 5.0Å range: probe atom residue distance (Å) B Occ B:Cu1001 b:5.8 occ:1.00 N B:BB91 2.0 6.6 0.9 N B:BB97 2.0 5.0 1.0 SG B:BB97 2.4 6.1 1.0 SG B:BB91 2.4 5.2 0.9 CA B:BB91 2.8 6.0 0.9 CA B:BB97 2.9 5.5 1.0 CB B:BB97 3.0 5.8 1.0 CB B:BB91 3.0 5.4 0.9 C1 B:COI0 3.1 8.7 0.9 C B:PRO6 3.2 5.3 1.0 C3 B:COI0 3.5 7.9 0.1 C3 B:COI0 3.5 10.7 0.9 C4 B:COI0 3.7 10.4 0.1 C2 B:COI0 3.7 9.6 0.9 CA B:PRO6 3.9 5.9 1.0 SG B:CYS4 3.9 6.3 1.0 C5 B:COI0 4.0 10.1 0.1 CG B:MET10 4.0 9.0 1.0 C B:BB91 4.1 10.4 0.9 C B:BB97 4.1 6.1 1.0 O B:CYS4 4.2 6.2 1.0 O2 B:COI0 4.2 11.5 0.9 C4 B:COI0 4.3 18.2 0.9 N B:SER8 4.4 6.1 1.0 CA B:TYR5 4.4 6.4 1.0 N B:GLY2 4.4 6.1 1.0 C B:CYS4 4.5 6.3 1.0 C6 B:COI0 4.7 26.2 0.9 N B:TYR5 4.7 6.4 1.0 CD1 B:TYR5 4.8 9.2 1.0 CB B:MET10 4.8 8.7 1.0 N B:PRO6 4.9 5.8 1.0 CB B:PRO6 5.0 7.2 1.0 SG B:CYS9 5.0 7.4 1.0

A.El Ghazouani, A.Basle, S.J.Firbank, C.W.Knapp, J.Gray, D.W.Graham, C.Dennison. Copper-Binding Properties and Structures of Methanobactins From Methylosinus Trichosporium OB3B. Inorg.Chem. V. 50 1378 2011.
ISSN: ISSN 0020-1669
PubMed: 21254756
DOI: 10.1021/IC101965J