Copper in the structure of Structure and Copper-Binding Properties of Methanobactins From Methylosinus Trichosporium OB3B (pdb 2xjh)

The binding sites of Copper atom in the structure of Structure and Copper-Binding Properties of Methanobactins From Methylosinus Trichosporium OB3B (pdb code 2xjh). This binding sites where shown with 5.0 Angstroms radius around Copper atom. The 2xjh structure was solved by A.EL-GHAZOUANI, A.BASLE, S.J.FIRBANK, C.W.KNAPP, J.GRAY, D.W.GRAHAM, C.DENNISON, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 20.0-0.9 Space group P41212 a (A) 29.475 b (A) 29.475 c (A) 29.480 alpha (°) 90.00 beta (°) 90.00 gamma (°) 90.00 Rfactor (%) 12.45 Rfree (%) 14.05 Copper Binding Sites: Copper binding site 1 out of 2 in 2xjh Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Copper in the PDB 2xjh. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Copper atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: 8li1, A: Gly2, A: Cys4, A: Tyr5, A: 66g7, A: Ser8, A: Met10, B: Ser8, conact list: Atom Atom Distance (A) Cu C54 A:8li1 4.24 Cu S8 A:8li1 2.41 Cu C55 A:8li1 3.76 Cu C57 A:8li1 4.15 Cu N13 A:8li1 2.03 Cu C58 A:8li1 2.89 Cu C60 A:8li1 3.46 Cu O14 A:8li1 4.25 Cu C53 A:8li1 3.80 Cu C59 A:8li1 3.03 Cu C56 A:8li1 3.15 Cu N A:Gly2 4.42 Cu O A:Cys4 4.22 Cu SG A:Cys4 4.03 Cu C A:Cys4 4.40 Cu N A:Tyr5 4.39 Cu CB A:Tyr5 4.67 Cu CD2 A:Tyr5 4.52 Cu C A:Tyr5 5.00 Cu CA A:Tyr5 3.98 Cu N1 A:66g7 2.05 Cu N A:66g7 4.91 Cu S10 A:66g7 2.34 Cu O21 A:66g7 4.31 Cu C83 A:66g7 4.16 Cu C1 A:66g7 3.00 Cu C A:66g7 3.20 Cu CA1 A:66g7 2.86 Cu CA A:66g7 3.89 Cu N A:Ser8 4.33 Cu CB A:Met10 4.99 Cu CG A:Met10 4.11 Cu CG A:Met10 4.18 Cu CB B:Ser8 4.99 Cu OG B:Ser8 4.48 interactive model: Copper binding site 2 out of 2 in 2xjh Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Copper in the PDB 2xjh. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Copper atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: B: 8li1, B: Gly2, B: Cys4, B: Tyr5, B: 66g7, B: Ser8, B: Cys9, B: Met10, conact list: Atom Atom Distance (A) Cu C52 B:8li1 4.00 Cu C54 B:8li1 4.68 Cu S8 B:8li1 2.39 Cu C55 B:8li1 3.73 Cu C57 B:8li1 4.08 Cu N13 B:8li1 1.99 Cu C58 B:8li1 2.85 Cu C60 B:8li1 3.49 Cu C60 B:8li1 3.46 Cu O14 B:8li1 4.22 Cu C53 B:8li1 4.30 Cu C53 B:8li1 3.70 Cu C59 B:8li1 3.04 Cu C56 B:8li1 3.11 Cu N B:Gly2 4.38 Cu O B:Cys4 4.18 Cu SG B:Cys4 3.90 Cu C B:Cys4 4.51 Cu N B:Tyr5 4.71 Cu CD1 B:Tyr5 4.76 Cu CA B:Tyr5 4.37 Cu N1 B:66g7 2.04 Cu N B:66g7 4.90 Cu S10 B:66g7 2.37 Cu O21 B:66g7 4.26 Cu C83 B:66g7 4.14 Cu C1 B:66g7 3.03 Cu C B:66g7 3.19 Cu CA1 B:66g7 2.88 Cu CA B:66g7 3.85 Cu C80 B:66g7 4.96 Cu N B:Ser8 4.36 Cu SG B:Cys9 4.99 Cu CB B:Met10 4.83 Cu CG B:Met10 4.04 interactive model: