Atomistry » Copper » PDB 2vr7-2xv0 » 2xjh
Atomistry »
  Copper »
    PDB 2vr7-2xv0 »
      2xjh »

Copper in PDB 2xjh: Structure and Copper-Binding Properties of Methanobactins From Methylosinus Trichosporium OB3B

Enzymatic activity of Structure and Copper-Binding Properties of Methanobactins From Methylosinus Trichosporium OB3B

All present enzymatic activity of Structure and Copper-Binding Properties of Methanobactins From Methylosinus Trichosporium OB3B:
1.15.1.1;

Protein crystallography data

The structure of Structure and Copper-Binding Properties of Methanobactins From Methylosinus Trichosporium OB3B, PDB code: 2xjh was solved by A.El-Ghazouani, A.Basle, S.J.Firbank, C.W.Knapp, J.Gray, D.W.Graham, C.Dennison, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 0.92
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 29.475, 29.475, 29.480, 90.00, 90.00, 90.00
R / Rfree (%) 12.5 / 14.1

Other elements in 2xjh:

The structure of Structure and Copper-Binding Properties of Methanobactins From Methylosinus Trichosporium OB3B also contains other interesting chemical elements:

Sodium (Na) 3 atoms

Copper Binding Sites:

The binding sites of Copper atom in the Structure and Copper-Binding Properties of Methanobactins From Methylosinus Trichosporium OB3B (pdb code 2xjh). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the Structure and Copper-Binding Properties of Methanobactins From Methylosinus Trichosporium OB3B, PDB code: 2xjh:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in 2xjh

Go back to Copper Binding Sites List in 2xjh
Copper binding site 1 out of 2 in the Structure and Copper-Binding Properties of Methanobactins From Methylosinus Trichosporium OB3B


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Structure and Copper-Binding Properties of Methanobactins From Methylosinus Trichosporium OB3B within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu1001

b:5.4
occ:1.00
N A:BB91 2.0 5.7 1.0
N A:BB97 2.0 5.6 1.0
SG A:BB97 2.3 6.0 1.0
SG A:BB91 2.4 5.1 1.0
CA A:BB97 2.9 5.5 1.0
CA A:BB91 2.9 5.0 1.0
CB A:BB97 3.0 5.8 1.0
CB A:BB91 3.0 5.0 1.0
C1 A:COI0 3.1 6.7 1.0
C A:PRO6 3.2 5.6 1.0
C3 A:COI0 3.5 6.6 1.0
C2 A:COI0 3.8 6.2 1.0
C4 A:COI0 3.8 6.8 1.0
CA A:PRO6 3.9 5.5 1.0
CA A:TYR5 4.0 5.2 1.0
SG A:CYS4 4.0 5.7 1.0
CG A:MET10 4.1 15.9 0.6
C A:BB91 4.1 6.0 1.0
C A:BB97 4.2 6.4 1.0
CG A:MET10 4.2 18.0 0.4
O A:CYS4 4.2 5.8 1.0
C6 A:COI0 4.2 7.6 1.0
O2 A:COI0 4.3 6.5 1.0
N A:SER8 4.3 6.5 1.0
N A:TYR5 4.4 5.1 1.0
C A:CYS4 4.4 5.5 1.0
N A:GLY2 4.4 5.3 1.0
OG B:SER8 4.5 7.9 0.5
CD2 A:TYR5 4.5 6.5 1.0
CB A:TYR5 4.7 5.5 1.0
N A:PRO6 4.9 5.3 1.0
CB B:SER8 5.0 8.2 0.5
CB A:MET10 5.0 14.1 0.6
C A:TYR5 5.0 5.2 1.0

Copper binding site 2 out of 2 in 2xjh

Go back to Copper Binding Sites List in 2xjh
Copper binding site 2 out of 2 in the Structure and Copper-Binding Properties of Methanobactins From Methylosinus Trichosporium OB3B


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Structure and Copper-Binding Properties of Methanobactins From Methylosinus Trichosporium OB3B within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu1001

b:5.8
occ:1.00
N B:BB91 2.0 6.6 0.9
N B:BB97 2.0 5.0 1.0
SG B:BB97 2.4 6.1 1.0
SG B:BB91 2.4 5.2 0.9
CA B:BB91 2.8 6.0 0.9
CA B:BB97 2.9 5.5 1.0
CB B:BB97 3.0 5.8 1.0
CB B:BB91 3.0 5.4 0.9
C1 B:COI0 3.1 8.7 0.9
C B:PRO6 3.2 5.3 1.0
C3 B:COI0 3.5 7.9 0.1
C3 B:COI0 3.5 10.7 0.9
C4 B:COI0 3.7 10.4 0.1
C2 B:COI0 3.7 9.6 0.9
CA B:PRO6 3.9 5.9 1.0
SG B:CYS4 3.9 6.3 1.0
C5 B:COI0 4.0 10.1 0.1
CG B:MET10 4.0 9.0 1.0
C B:BB91 4.1 10.4 0.9
C B:BB97 4.1 6.1 1.0
O B:CYS4 4.2 6.2 1.0
O2 B:COI0 4.2 11.5 0.9
C4 B:COI0 4.3 18.2 0.9
N B:SER8 4.4 6.1 1.0
CA B:TYR5 4.4 6.4 1.0
N B:GLY2 4.4 6.1 1.0
C B:CYS4 4.5 6.3 1.0
C6 B:COI0 4.7 26.2 0.9
N B:TYR5 4.7 6.4 1.0
CD1 B:TYR5 4.8 9.2 1.0
CB B:MET10 4.8 8.7 1.0
N B:PRO6 4.9 5.8 1.0
CB B:PRO6 5.0 7.2 1.0
SG B:CYS9 5.0 7.4 1.0

Reference:

A.El Ghazouani, A.Basle, S.J.Firbank, C.W.Knapp, J.Gray, D.W.Graham, C.Dennison. Copper-Binding Properties and Structures of Methanobactins From Methylosinus Trichosporium OB3B. Inorg.Chem. V. 50 1378 2011.
ISSN: ISSN 0020-1669
PubMed: 21254756
DOI: 10.1021/IC101965J
Page generated: Mon Jul 14 01:30:32 2025

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy