Chemical elements
  Copper
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    Chemical Properties
    Cuprous Compounds
    Complex Copper Compounds
    Cupric Compounds
    PDB 1a2v-1bxu
    PDB 1bxv-1fwx
    PDB 1g3d-1j9t
    PDB 1jcv-1mfm
    PDB 1mg2-1paz
    PDB 1pcs-1sii
    PDB 1sjm-1w6w
    PDB 1w77-2afn
    PDB 2ahk-2dv6
    PDB 2dws-2ggp
    PDB 2ghz-2mta
    PDB 2nrd-2vm3
      2nrd
      2occ
      2oj1
      2oov
      2oqe
      2ov0
      2oxi
      2p3x
      2p80
      2pcf
      2plt
      2pnc
      2pp7
      2pp8
      2pp9
      2ppa
      2ppc
      2ppd
      2ppe
      2ppf
      2q5b
      2q9o
      2qdv
      2qdw
      2qif
      2qpd
      2qpe
      2qt6
      2qxj
      2r27
      2r7e
      2rac
      2rli
      2rnb
      2sod
      2tir
      2trx
      2tsa
      2tsb
      2uwf
      2ux6
      2ux7
      2uxf
      2uxg
      2v0a
      2vb2
      2vds
      2vdz
      2ve0
      2vm3
    PDB 2vm4-2yah
    PDB 2yam-3bkt
    PDB 3bqv-3fyi
    PDB 3g5w-3mie
    PDB 3mif-3t6v
    PDB 3t6w-9pcy

Copper in the structure of Crystal Structure Analysis of Coagulation Factor VIII (pdb 2r7e)






The binding sites of Copper atom in the structure of Crystal Structure Analysis of Coagulation Factor VIII (pdb code 2r7e). This binding sites where shown with 5.0 Angstroms radius around Copper atom.
The 2r7e structure was solved by B.L.STODDARD, B.W.SHEN, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)57.4-3.7
Space groupP41212
a (A)134.569
b (A)134.569
c (A)359.496
alpha (°)90.00
beta (°)90.00
gamma (°)90.00
Rfactor (%)27.9
Rfree (%)34.7


Copper Binding Sites:

Copper binding site 1 out of 2 in 2r7e


Copper binding site 1 out of 2 in 2r7e
Click to enlarge
stereopicture of Copper binding site 1 out of 2 in 2r7e
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Copper in the PDB 2r7e. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Copper atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Val266, A: His267, A: Ser268, A: Cys310, A: Ile312, A: His315,

conact list:


AtomAtomDistance (A)
CuO A:Val2664.06
CuC A:Val2664.55
CuO A:His2674.68
CuNE2 A:His2672.61
CuN A:His2674.16
CuCB A:His2673.11
CuND1 A:His2672.22
CuCD2 A:His2672.54
CuC A:His2673.57
CuCE1 A:His2672.44
CuCG A:His2672.29
CuCA A:His2672.93
CuO A:Ser2683.95
CuN A:Ser2683.41
CuC A:Ser2684.74
CuCA A:Ser2684.63
CuCB A:Cys3103.86
CuSG A:Cys3102.28
CuCA A:Cys3104.92
CuCB A:Ile3124.34
CuCD1 A:Ile3122.25
CuCG1 A:Ile3123.24
CuNE2 A:His3154.00
CuCB A:His3153.39
CuND1 A:His3151.97
CuCD2 A:His3154.07
CuCE1 A:His3152.88
CuCG A:His3152.99
CuCA A:His3154.93

interactive model:


Copper binding site 2 out of 2 in 2r7e


Copper binding site 2 out of 2 in 2r7e
Click to enlarge
stereopicture of Copper binding site 2 out of 2 in 2r7e
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Copper in the PDB 2r7e. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Copper atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: His1954, B: Cys2000, B: Ile2002, B: His2005, B: Leu2006, B: Met2010,

conact list:


AtomAtomDistance (A)
CuNE2 B:His19543.88
CuCB B:His19544.46
CuND1 B:His19542.31
CuCD2 B:His19544.41
CuCE1 B:His19542.56
CuCG B:His19543.65
CuCA B:His19544.53
CuO B:Cys20004.95
CuCB B:Cys20003.77
CuSG B:Cys20002.26
CuO B:Ile20024.21
CuN B:Ile20024.78
CuCB B:Ile20022.96
CuCD1 B:Ile20022.76
CuCG2 B:Ile20023.19
CuC B:Ile20024.77
CuCG1 B:Ile20023.31
CuCA B:Ile20024.34
CuNE2 B:His20054.66
CuN B:His20054.24
CuCB B:His20052.66
CuND1 B:His20052.64
CuCD2 B:His20054.25
CuC B:His20054.60
CuCE1 B:His20053.86
CuCG B:His20052.97
CuCA B:His20053.96
CuN B:Leu20064.99
CuSD B:Met20104.85

interactive model:




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