Copper in PDB 2p80: Solution Structure of the Complex Between Nitrite Reductase and Pseudoazurin From A. Faecalis

Enzymatic activity of Solution Structure of the Complex Between Nitrite Reductase and Pseudoazurin From A. Faecalis

Other elements in 2p80:

Copper Binding Sites:

Copper binding site 1 out of 7 in 2p80

Copper Binding Sites List in 2p80

Copper binding site 1 out of 7 in the Solution Structure of the Complex Between Nitrite Reductase and Pseudoazurin From A. Faecalis


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Solution Structure of the Complex Between Nitrite Reductase and Pseudoazurin From A. Faecalis within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu345 b:9.4 occ:1.00 ND1 A:HIS145 2.1 9.4 1.0 ND1 A:HIS95 2.1 8.6 1.0 SG A:CYS136 2.2 9.4 1.0 SD A:MET150 2.4 8.8 1.0 HB3 A:HIS145 2.8 0.0 1.0 CE1 A:HIS145 3.0 9.4 1.0 HB3 A:HIS95 3.0 0.0 1.0 CE1 A:HIS95 3.0 9.4 1.0 HE1 A:MET150 3.1 0.0 1.0 HB3 A:CYS136 3.1 0.0 1.0 CG A:HIS95 3.1 8.8 1.0 CG A:HIS145 3.1 7.9 1.0 HE1 A:HIS145 3.1 0.0 1.0 CB A:CYS136 3.1 7.6 1.0 HA A:HIS95 3.2 0.0 1.0 HE1 A:HIS95 3.2 0.0 1.0 CE A:MET150 3.3 9.5 1.0 HB2 A:CYS136 3.4 0.0 1.0 CB A:HIS95 3.4 8.8 1.0 CB A:HIS145 3.5 7.7 1.0 HD3 A:PRO138 3.6 0.0 1.0 HE2 A:MET150 3.6 0.0 1.0 HG3 A:PRO138 3.7 0.0 1.0 CG A:MET150 3.8 7.4 1.0 CA A:HIS95 3.8 8.7 1.0 HG2 A:PRO138 3.9 0.0 1.0 HG2 A:MET150 3.9 0.0 1.0 H A:ASN96 3.9 0.0 1.0 HB3 A:MET62 4.1 0.0 1.0 NE2 A:HIS145 4.1 9.2 1.0 CG A:PRO138 4.1 9.7 1.0 NE2 A:HIS95 4.1 9.6 1.0 HB2 A:HIS145 4.2 0.0 1.0 CD2 A:HIS145 4.2 9.7 1.0 HB3 A:MET150 4.2 0.0 1.0 CD2 A:HIS95 4.2 9.2 1.0 HB2 A:MET150 4.2 0.0 1.0 HE3 A:MET150 4.2 0.0 1.0 CD A:PRO138 4.2 8.8 1.0 CB A:MET150 4.3 7.6 1.0 SD A:MET62 4.3 11.1 1.0 HA A:HIS145 4.4 0.0 1.0 HB2 A:HIS95 4.5 0.0 1.0 HD2 A:PRO138 4.5 0.0 1.0 CA A:HIS145 4.5 7.7 1.0 CA A:CYS136 4.5 7.9 1.0 O A:MET94 4.6 9.3 1.0 N A:ASN96 4.6 8.8 1.0 HG3 A:MET150 4.7 0.0 1.0 C A:HIS95 4.8 8.9 1.0 HZ A:PHE64 4.8 0.0 1.0 HB2 A:MET62 4.8 0.0 1.0 C A:CYS136 4.8 8.2 1.0 CB A:MET62 4.9 9.6 1.0 N A:HIS95 4.9 8.7 1.0 HE2 A:HIS145 5.0 0.0 1.0

Copper binding site 2 out of 7 in 2p80

Copper Binding Sites List in 2p80

Copper binding site 2 out of 7 in the Solution Structure of the Complex Between Nitrite Reductase and Pseudoazurin From A. Faecalis


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Solution Structure of the Complex Between Nitrite Reductase and Pseudoazurin From A. Faecalis within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu346 b:9.2 occ:1.00 NE2 A:HIS100 2.0 8.3 1.0 NE2 B:HIS306 2.1 8.1 1.0 NE2 A:HIS135 2.1 8.8 1.0 CE1 A:HIS100 2.9 8.0 1.0 CE1 B:HIS306 3.0 7.9 1.0 CE1 A:HIS135 3.1 7.0 1.0 CD2 B:HIS306 3.1 7.7 1.0 CD2 A:HIS135 3.1 8.3 1.0 CD2 A:HIS100 3.1 7.6 1.0 HE1 A:HIS100 3.1 0.0 1.0 HE1 B:HIS306 3.2 0.0 1.0 HE1 A:HIS135 3.3 0.0 1.0 HD2 A:HIS135 3.3 0.0 1.0 HD2 B:HIS306 3.3 0.0 1.0 HD2 A:HIS100 3.4 0.0 1.0 CE1 B:HIS255 3.8 13.6 1.0 NE2 B:HIS255 3.9 12.8 1.0 HE1 B:HIS255 3.9 0.0 1.0 HE2 B:HIS255 4.0 0.0 1.0 ND1 A:HIS100 4.1 7.8 1.0 ND1 B:HIS306 4.2 7.5 1.0 CG A:HIS100 4.2 7.2 1.0 ND1 A:HIS135 4.2 7.9 1.0 CG B:HIS306 4.3 7.5 1.0 CG A:HIS135 4.3 8.1 1.0 ND1 B:HIS255 4.3 11.9 1.0 HA2 A:GLY286 4.3 0.0 1.0 CD2 B:HIS255 4.4 12.7 1.0 OD2 A:ASP98 4.5 19.0 1.0 HD22 B:LEU308 4.6 0.0 1.0 CG B:HIS255 4.6 9.3 1.0 HA3 A:GLY286 4.7 0.0 1.0 HD1 B:HIS255 4.7 0.0 1.0 HD23 B:LEU308 4.9 0.0 1.0 HD2 B:HIS255 4.9 0.0 1.0 HG12 B:ILE257 4.9 0.0 1.0 HG12 A:VAL133 5.0 0.0 1.0 HD1 A:HIS100 5.0 0.0 1.0 CA A:GLY286 5.0 7.3 1.0

Copper binding site 3 out of 7 in 2p80

Copper Binding Sites List in 2p80

Copper binding site 3 out of 7 in the Solution Structure of the Complex Between Nitrite Reductase and Pseudoazurin From A. Faecalis


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Solution Structure of the Complex Between Nitrite Reductase and Pseudoazurin From A. Faecalis within 5.0Å range: probe atom residue distance (Å) B Occ B:Cu345 b:11.1 occ:1.00 ND1 B:HIS145 2.1 10.6 1.0 ND1 B:HIS95 2.1 9.7 1.0 SG B:CYS136 2.2 11.0 1.0 SD B:MET150 2.5 10.2 1.0 HB3 B:HIS145 2.8 0.0 1.0 CE1 B:HIS145 3.0 11.9 1.0 CE1 B:HIS95 3.0 10.2 1.0 HE3 B:MET150 3.0 0.0 1.0 HB3 B:HIS95 3.1 0.0 1.0 HB3 B:CYS136 3.1 0.0 1.0 CG B:HIS95 3.1 10.3 1.0 CG B:HIS145 3.1 10.0 1.0 HE1 B:HIS145 3.1 0.0 1.0 HA B:HIS95 3.1 0.0 1.0 CB B:CYS136 3.2 10.2 1.0 HE1 B:HIS95 3.2 0.0 1.0 CE B:MET150 3.2 11.3 1.0 HB2 B:CYS136 3.5 0.0 1.0 CB B:HIS95 3.5 10.4 1.0 CB B:HIS145 3.5 9.8 1.0 HG3 B:PRO138 3.6 0.0 1.0 HD3 B:PRO138 3.6 0.0 1.0 HE1 B:MET150 3.6 0.0 1.0 HG2 B:PRO138 3.8 0.0 1.0 CA B:HIS95 3.8 10.5 1.0 CG B:MET150 3.9 9.7 1.0 HG2 B:MET150 4.0 0.0 1.0 H B:ASN96 4.0 0.0 1.0 CG B:PRO138 4.0 12.3 1.0 NE2 B:HIS145 4.1 11.8 1.0 NE2 B:HIS95 4.1 10.8 1.0 HB2 B:HIS145 4.1 0.0 1.0 HB3 B:MET62 4.2 0.0 1.0 CD2 B:HIS95 4.2 10.7 1.0 CD2 B:HIS145 4.2 11.3 1.0 CD B:PRO138 4.2 10.2 1.0 HE2 B:MET150 4.2 0.0 1.0 SD B:MET62 4.3 12.4 1.0 HB2 B:MET150 4.3 0.0 1.0 HB3 B:MET150 4.3 0.0 1.0 CB B:MET150 4.4 9.3 1.0 HB2 B:HIS95 4.5 0.0 1.0 HA B:HIS145 4.5 0.0 1.0 HD2 B:PRO138 4.5 0.0 1.0 CA B:CYS136 4.5 9.8 1.0 O B:MET94 4.6 11.9 1.0 CA B:HIS145 4.6 9.5 1.0 N B:ASN96 4.6 10.6 1.0 C B:HIS95 4.7 10.8 1.0 HG3 B:MET150 4.7 0.0 1.0 HZ B:PHE64 4.8 0.0 1.0 C B:CYS136 4.8 9.6 1.0 HB2 B:MET62 4.8 0.0 1.0 N B:HIS95 4.9 10.7 1.0 CB B:MET62 4.9 10.6 1.0 HE2 B:HIS145 5.0 0.0 1.0 HE2 B:HIS95 5.0 0.0 1.0

Copper binding site 4 out of 7 in 2p80

Copper Binding Sites List in 2p80

Copper binding site 4 out of 7 in the Solution Structure of the Complex Between Nitrite Reductase and Pseudoazurin From A. Faecalis


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Solution Structure of the Complex Between Nitrite Reductase and Pseudoazurin From A. Faecalis within 5.0Å range: probe atom residue distance (Å) B Occ B:Cu346 b:10.6 occ:1.00 NE2 B:HIS100 2.1 9.0 1.0 NE2 B:HIS135 2.1 9.8 1.0 NE2 C:HIS306 2.1 9.8 1.0 CE1 B:HIS100 3.0 9.7 1.0 CE1 C:HIS306 3.0 9.9 1.0 CD2 B:HIS135 3.1 9.5 1.0 CE1 B:HIS135 3.1 9.6 1.0 CD2 B:HIS100 3.1 8.2 1.0 HE1 B:HIS100 3.1 0.0 1.0 CD2 C:HIS306 3.2 9.3 1.0 HE1 C:HIS306 3.2 0.0 1.0 HD2 B:HIS135 3.3 0.0 1.0 HE1 B:HIS135 3.3 0.0 1.0 HD2 C:HIS306 3.4 0.0 1.0 HD2 B:HIS100 3.4 0.0 1.0 NE2 C:HIS255 3.9 14.3 1.0 HE2 C:HIS255 3.9 0.0 1.0 CE1 C:HIS255 4.1 13.2 1.0 ND1 B:HIS100 4.1 9.0 1.0 ND1 B:HIS135 4.2 9.1 1.0 CG B:HIS100 4.2 8.9 1.0 ND1 C:HIS306 4.2 8.7 1.0 CG B:HIS135 4.2 9.2 1.0 CD2 C:HIS255 4.2 14.3 1.0 CG C:HIS306 4.3 9.7 1.0 HE1 C:HIS255 4.3 0.0 1.0 HA2 B:GLY286 4.3 0.0 1.0 HD23 C:LEU308 4.4 0.0 1.0 OD2 B:ASP98 4.4 20.7 1.0 ND1 C:HIS255 4.6 12.4 1.0 HD2 C:HIS255 4.6 0.0 1.0 CG C:HIS255 4.7 11.0 1.0 HA3 B:GLY286 4.8 0.0 1.0 HG12 C:ILE257 4.9 0.0 1.0 HD1 B:HIS100 5.0 0.0 1.0

Copper binding site 5 out of 7 in 2p80

Copper Binding Sites List in 2p80

Copper binding site 5 out of 7 in the Solution Structure of the Complex Between Nitrite Reductase and Pseudoazurin From A. Faecalis


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 5 of Solution Structure of the Complex Between Nitrite Reductase and Pseudoazurin From A. Faecalis within 5.0Å range: probe atom residue distance (Å) B Occ C:Cu345 b:14.3 occ:1.00 ND1 C:HIS145 2.1 13.7 1.0 ND1 C:HIS95 2.1 14.6 1.0 SG C:CYS136 2.2 13.7 1.0 SD C:MET150 2.5 13.1 1.0 HB3 C:HIS145 2.8 0.0 1.0 CE1 C:HIS145 3.0 14.8 1.0 HB3 C:HIS95 3.0 0.0 1.0 CE1 C:HIS95 3.0 13.5 1.0 HB3 C:CYS136 3.0 0.0 1.0 HE3 C:MET150 3.0 0.0 1.0 CG C:HIS145 3.1 11.6 1.0 CG C:HIS95 3.1 13.8 1.0 CB C:CYS136 3.1 12.5 1.0 HA C:HIS95 3.2 0.0 1.0 HE1 C:HIS145 3.2 0.0 1.0 HE1 C:HIS95 3.2 0.0 1.0 CE C:MET150 3.3 12.8 1.0 CB C:HIS145 3.4 11.2 1.0 CB C:HIS95 3.4 14.1 1.0 HB2 C:CYS136 3.4 0.0 1.0 HD3 C:PRO138 3.5 0.0 1.0 HG3 C:PRO138 3.5 0.0 1.0 HE1 C:MET150 3.6 0.0 1.0 HG2 C:PRO138 3.7 0.0 1.0 CA C:HIS95 3.8 13.7 1.0 CG C:MET150 3.9 12.7 1.0 H C:ASN96 3.9 0.0 1.0 HG2 C:MET150 3.9 0.0 1.0 CG C:PRO138 4.0 14.1 1.0 HB2 C:HIS145 4.1 0.0 1.0 CD C:PRO138 4.1 13.3 1.0 NE2 C:HIS145 4.1 13.7 1.0 NE2 C:HIS95 4.1 14.2 1.0 CD2 C:HIS95 4.2 14.3 1.0 HB3 C:MET62 4.2 0.0 1.0 CD2 C:HIS145 4.2 13.2 1.0 HE2 C:MET150 4.2 0.0 1.0 SD C:MET62 4.3 14.5 1.0 HB2 C:MET150 4.3 0.0 1.0 HB3 C:MET150 4.3 0.0 1.0 HD2 C:PRO138 4.4 0.0 1.0 CB C:MET150 4.4 11.3 1.0 HA C:HIS145 4.4 0.0 1.0 HB2 C:HIS95 4.4 0.0 1.0 CA C:CYS136 4.5 12.1 1.0 CA C:HIS145 4.6 11.3 1.0 N C:ASN96 4.6 13.5 1.0 O C:MET94 4.7 15.1 1.0 HG3 C:MET150 4.7 0.0 1.0 HB2 C:MET62 4.7 0.0 1.0 C C:HIS95 4.8 13.5 1.0 C C:CYS136 4.8 12.2 1.0 HZ C:PHE64 4.9 0.0 1.0 CB C:MET62 4.9 13.4 1.0 N C:HIS95 4.9 13.9 1.0

Copper binding site 6 out of 7 in 2p80

Copper Binding Sites List in 2p80

Copper binding site 6 out of 7 in the Solution Structure of the Complex Between Nitrite Reductase and Pseudoazurin From A. Faecalis


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 6 of Solution Structure of the Complex Between Nitrite Reductase and Pseudoazurin From A. Faecalis within 5.0Å range: probe atom residue distance (Å) B Occ C:Cu346 b:11.8 occ:1.00 NE2 C:HIS100 2.0 10.3 1.0 NE2 A:HIS306 2.1 10.8 1.0 NE2 C:HIS135 2.1 11.3 1.0 CE1 C:HIS100 2.9 10.4 1.0 CE1 A:HIS306 3.0 9.9 1.0 CD2 C:HIS135 3.1 10.5 1.0 CE1 C:HIS135 3.1 10.3 1.0 HE1 C:HIS100 3.1 0.0 1.0 CD2 C:HIS100 3.1 10.3 1.0 CD2 A:HIS306 3.1 9.9 1.0 HE1 A:HIS306 3.2 0.0 1.0 HD2 C:HIS135 3.3 0.0 1.0 HE1 C:HIS135 3.3 0.0 1.0 HD2 A:HIS306 3.4 0.0 1.0 HD2 C:HIS100 3.4 0.0 1.0 NE2 A:HIS255 3.9 14.8 1.0 HE2 A:HIS255 3.9 0.0 1.0 ND1 C:HIS100 4.1 9.8 1.0 CE1 A:HIS255 4.1 15.3 1.0 CD2 A:HIS255 4.2 14.0 1.0 ND1 A:HIS306 4.2 9.2 1.0 CG C:HIS100 4.2 9.9 1.0 ND1 C:HIS135 4.2 11.1 1.0 CG A:HIS306 4.3 10.2 1.0 CG C:HIS135 4.3 10.7 1.0 HD23 A:LEU308 4.3 0.0 1.0 HA2 C:GLY286 4.3 0.0 1.0 HE1 A:HIS255 4.4 0.0 1.0 HD2 A:HIS255 4.5 0.0 1.0 OD2 C:ASP98 4.5 24.2 1.0 ND1 A:HIS255 4.6 13.7 1.0 HG13 C:VAL133 4.6 0.0 1.0 CG A:HIS255 4.6 11.0 1.0 HA3 C:GLY286 4.7 0.0 1.0 HG12 A:ILE257 4.7 0.0 1.0 HD1 C:HIS100 5.0 0.0 1.0 HG1 A:THR280 5.0 0.0 1.0 CA C:GLY286 5.0 8.9 1.0

Copper binding site 7 out of 7 in 2p80

Copper Binding Sites List in 2p80

Copper binding site 7 out of 7 in the Solution Structure of the Complex Between Nitrite Reductase and Pseudoazurin From A. Faecalis


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 7 of Solution Structure of the Complex Between Nitrite Reductase and Pseudoazurin From A. Faecalis within 5.0Å range: probe atom residue distance (Å) B Occ D:Cu124 b:27.4 occ:1.00 ND1 D:HIS40 2.1 20.5 1.0 SG D:CYS78 2.2 21.1 1.0 ND1 D:HIS81 2.3 26.6 1.0 HB2 D:HIS81 2.8 0.0 1.0 HA D:HIS40 2.8 0.0 1.0 SD D:MET86 2.8 20.5 1.0 HB3 D:HIS40 3.0 0.0 1.0 CE1 D:HIS40 3.1 19.4 1.0 CG D:HIS40 3.1 20.3 1.0 CB D:CYS78 3.2 15.4 1.0 HG2 D:PRO80 3.2 0.0 1.0 HB2 D:CYS78 3.2 0.0 1.0 CG D:HIS81 3.3 22.6 1.0 CE1 D:HIS81 3.3 26.4 1.0 HE1 D:HIS40 3.3 0.0 1.0 HB3 D:CYS78 3.3 0.0 1.0 HE1 D:MET86 3.4 0.0 1.0 CB D:HIS40 3.4 18.0 1.0 CE D:MET86 3.5 14.5 1.0 CB D:HIS81 3.5 16.9 1.0 HE1 D:HIS81 3.5 0.0 1.0 HE2 D:MET86 3.5 0.0 1.0 H D:HIS81 3.5 0.0 1.0 CA D:HIS40 3.6 21.9 1.0 O D:GLY39 3.8 29.1 1.0 H D:ASN41 3.9 0.0 1.0 HD2 D:PRO80 4.2 0.0 1.0 NE2 D:HIS40 4.2 21.1 1.0 CD2 D:HIS40 4.2 21.1 1.0 N D:HIS81 4.2 18.9 1.0 HB3 D:HIS81 4.2 0.0 1.0 CG D:MET86 4.2 14.0 1.0 CG D:PRO80 4.3 25.2 1.0 HG2 D:MET86 4.4 0.0 1.0 HB3 D:MET86 4.4 0.0 1.0 HG3 D:MET16 4.4 0.0 1.0 C D:GLY39 4.4 28.0 1.0 CD2 D:HIS81 4.4 21.1 1.0 NE2 D:HIS81 4.4 20.3 1.0 N D:HIS40 4.4 23.2 1.0 HB2 D:HIS40 4.4 0.0 1.0 CA D:HIS81 4.5 15.7 1.0 HB2 D:MET86 4.5 0.0 1.0 HE3 D:MET86 4.5 0.0 1.0 CA D:CYS78 4.6 15.0 1.0 CB D:MET86 4.6 14.5 1.0 N D:ASN41 4.6 19.6 1.0 HB3 D:MET16 4.7 0.0 1.0 C D:HIS40 4.7 22.0 1.0 CD D:PRO80 4.8 23.6 1.0 HG3 D:PRO80 4.8 0.0 1.0 SD D:MET16 4.8 25.9 1.0 HB2 D:PRO80 4.9 0.0 1.0 HA D:CYS78 4.9 0.0 1.0 HB3 D:MET7 4.9 0.0 1.0 HG2 D:MET7 5.0 0.0 1.0

Reference: