Copper in PDB 2lel: Structure of Cu(I)Cu(II)-Copk From Cupriavidus Metallidurans CH34
Copper Binding Sites:
The binding sites of Copper atom in the Structure of Cu(I)Cu(II)-Copk From Cupriavidus Metallidurans CH34
(pdb code 2lel). This binding sites where shown within
5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the
Structure of Cu(I)Cu(II)-Copk From Cupriavidus Metallidurans CH34, PDB code: 2lel:
Jump to Copper binding site number:
1;
2;
Copper binding site 1 out
of 2 in 2lel
Go back to
Copper Binding Sites List in 2lel
Copper binding site 1 out
of 2 in the Structure of Cu(I)Cu(II)-Copk From Cupriavidus Metallidurans CH34
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 1 of Structure of Cu(I)Cu(II)-Copk From Cupriavidus Metallidurans CH34 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cu101
b:0.0
occ:1.00
|
SD
|
A:MET44
|
2.3
|
0.0
|
1.0
|
SD
|
A:MET38
|
2.3
|
0.0
|
1.0
|
SD
|
A:MET28
|
2.3
|
0.0
|
1.0
|
SD
|
A:MET54
|
2.3
|
0.0
|
1.0
|
HB2
|
A:MET54
|
2.8
|
0.0
|
1.0
|
HB2
|
A:MET28
|
3.2
|
0.0
|
1.0
|
HG2
|
A:MET44
|
3.3
|
0.0
|
1.0
|
HB3
|
A:MET38
|
3.3
|
0.0
|
1.0
|
HG12
|
A:VAL18
|
3.3
|
0.0
|
1.0
|
CG
|
A:MET44
|
3.4
|
0.0
|
1.0
|
CG
|
A:MET54
|
3.4
|
0.0
|
1.0
|
CG
|
A:MET28
|
3.4
|
0.0
|
1.0
|
CG
|
A:MET38
|
3.5
|
0.0
|
1.0
|
HG2
|
A:MET28
|
3.5
|
0.0
|
1.0
|
CB
|
A:MET54
|
3.6
|
0.0
|
1.0
|
HG2
|
A:MET38
|
3.6
|
0.0
|
1.0
|
CE
|
A:MET44
|
3.6
|
0.0
|
1.0
|
HE1
|
A:MET44
|
3.7
|
0.0
|
1.0
|
HG2
|
A:MET54
|
3.7
|
0.0
|
1.0
|
CB
|
A:MET38
|
3.7
|
0.0
|
1.0
|
CE
|
A:MET28
|
3.7
|
0.0
|
1.0
|
HG3
|
A:MET44
|
3.7
|
0.0
|
1.0
|
HE3
|
A:MET28
|
3.7
|
0.0
|
1.0
|
CE
|
A:MET38
|
3.8
|
0.0
|
1.0
|
HB2
|
A:MET38
|
3.8
|
0.0
|
1.0
|
HE2
|
A:MET38
|
3.8
|
0.0
|
1.0
|
HD22
|
A:LEU12
|
3.8
|
0.0
|
1.0
|
HG11
|
A:VAL18
|
3.8
|
0.0
|
1.0
|
CB
|
A:MET28
|
3.8
|
0.0
|
1.0
|
CE
|
A:MET54
|
4.0
|
0.0
|
1.0
|
HE3
|
A:MET44
|
4.0
|
0.0
|
1.0
|
HA
|
A:MET54
|
4.0
|
0.0
|
1.0
|
CG1
|
A:VAL18
|
4.1
|
0.0
|
1.0
|
HA
|
A:MET28
|
4.1
|
0.0
|
1.0
|
HE2
|
A:MET54
|
4.2
|
0.0
|
1.0
|
HG23
|
A:VAL18
|
4.2
|
0.0
|
1.0
|
HE2
|
A:MET28
|
4.3
|
0.0
|
1.0
|
HE1
|
A:MET38
|
4.4
|
0.0
|
1.0
|
HG3
|
A:MET54
|
4.4
|
0.0
|
1.0
|
CA
|
A:MET54
|
4.4
|
0.0
|
1.0
|
HG3
|
A:MET28
|
4.4
|
0.0
|
1.0
|
HG3
|
A:MET38
|
4.4
|
0.0
|
1.0
|
HB3
|
A:MET54
|
4.4
|
0.0
|
1.0
|
HE1
|
A:MET54
|
4.4
|
0.0
|
1.0
|
HG21
|
A:VAL18
|
4.5
|
0.0
|
1.0
|
HE1
|
A:MET28
|
4.5
|
0.0
|
1.0
|
HE3
|
A:MET38
|
4.5
|
0.0
|
1.0
|
HE2
|
A:MET44
|
4.5
|
0.0
|
1.0
|
CA
|
A:MET28
|
4.5
|
0.0
|
1.0
|
HE3
|
A:MET54
|
4.7
|
0.0
|
1.0
|
CB
|
A:MET44
|
4.7
|
0.0
|
1.0
|
CD2
|
A:LEU12
|
4.7
|
0.0
|
1.0
|
HB3
|
A:LYS42
|
4.7
|
0.0
|
1.0
|
HB3
|
A:MET28
|
4.7
|
0.0
|
1.0
|
HG13
|
A:VAL18
|
4.8
|
0.0
|
1.0
|
CG2
|
A:VAL18
|
4.8
|
0.0
|
1.0
|
HB3
|
A:MET44
|
4.8
|
0.0
|
1.0
|
HD21
|
A:LEU12
|
4.9
|
0.0
|
1.0
|
O
|
A:LYS42
|
4.9
|
0.0
|
1.0
|
HD23
|
A:LEU12
|
4.9
|
0.0
|
1.0
|
H
|
A:MET54
|
5.0
|
0.0
|
1.0
|
N
|
A:MET54
|
5.0
|
0.0
|
1.0
|
|
Copper binding site 2 out
of 2 in 2lel
Go back to
Copper Binding Sites List in 2lel
Copper binding site 2 out
of 2 in the Structure of Cu(I)Cu(II)-Copk From Cupriavidus Metallidurans CH34
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 2 of Structure of Cu(I)Cu(II)-Copk From Cupriavidus Metallidurans CH34 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cu102
b:0.0
occ:1.00
|
OD1
|
A:ASP2
|
2.0
|
0.0
|
1.0
|
ND1
|
A:HIS70
|
2.0
|
0.0
|
1.0
|
O
|
A:HOH201
|
2.0
|
0.0
|
1.0
|
N
|
A:VAL1
|
2.2
|
0.0
|
1.0
|
H2
|
A:HOH201
|
2.5
|
0.0
|
1.0
|
H1
|
A:HOH201
|
2.5
|
0.0
|
1.0
|
CE1
|
A:HIS70
|
2.6
|
0.0
|
1.0
|
HE1
|
A:HIS70
|
2.6
|
0.0
|
1.0
|
H1
|
A:VAL1
|
2.7
|
0.0
|
1.0
|
H2
|
A:VAL1
|
2.7
|
0.0
|
1.0
|
CG
|
A:ASP2
|
2.9
|
0.0
|
1.0
|
C
|
A:VAL1
|
3.0
|
0.0
|
1.0
|
CA
|
A:VAL1
|
3.0
|
0.0
|
1.0
|
CG
|
A:HIS70
|
3.1
|
0.0
|
1.0
|
O
|
A:VAL1
|
3.3
|
0.0
|
1.0
|
O
|
A:HIS70
|
3.4
|
0.0
|
1.0
|
HB2
|
A:HIS70
|
3.4
|
0.0
|
1.0
|
HG
|
A:SER71
|
3.4
|
0.0
|
1.0
|
N
|
A:ASP2
|
3.4
|
0.0
|
1.0
|
HA
|
A:VAL1
|
3.4
|
0.0
|
1.0
|
HB2
|
A:ASP2
|
3.5
|
0.0
|
1.0
|
H
|
A:ASP2
|
3.7
|
0.0
|
1.0
|
CB
|
A:ASP2
|
3.7
|
0.0
|
1.0
|
NE2
|
A:HIS70
|
3.7
|
0.0
|
1.0
|
OD2
|
A:ASP2
|
3.8
|
0.0
|
1.0
|
OG
|
A:SER71
|
3.8
|
0.0
|
1.0
|
CB
|
A:HIS70
|
3.8
|
0.0
|
1.0
|
CD2
|
A:HIS70
|
4.0
|
0.0
|
1.0
|
CA
|
A:ASP2
|
4.2
|
0.0
|
1.0
|
C
|
A:HIS70
|
4.3
|
0.0
|
1.0
|
CB
|
A:VAL1
|
4.4
|
0.0
|
1.0
|
HE2
|
A:HIS70
|
4.5
|
0.0
|
1.0
|
HB
|
A:VAL1
|
4.5
|
0.0
|
1.0
|
HG21
|
A:VAL1
|
4.6
|
0.0
|
1.0
|
HB3
|
A:HIS70
|
4.6
|
0.0
|
1.0
|
HB3
|
A:ASP2
|
4.7
|
0.0
|
1.0
|
CA
|
A:HIS70
|
4.7
|
0.0
|
1.0
|
HA
|
A:ASP2
|
4.9
|
0.0
|
1.0
|
CG2
|
A:VAL1
|
5.0
|
0.0
|
1.0
|
HD2
|
A:HIS70
|
5.0
|
0.0
|
1.0
|
O
|
A:GLY69
|
5.0
|
0.0
|
1.0
|
|
Reference:
M.R.Ash,
L.X.Chong,
M.J.Maher,
M.G.Hinds,
Z.Xiao,
A.G.Wedd.
Molecular Basis of the Cooperative Binding of Cu(I) and Cu(II) to the Copk Protein From Cupriavidus Metallidurans CH34. Biochemistry V. 50 9237 2011.
ISSN: ISSN 0006-2960
PubMed: 21936507
DOI: 10.1021/BI200841F
Page generated: Tue Jul 30 23:49:34 2024
|