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Copper in PDB 2jja: Crystal Structure of Gna with Synthetic Copper Base Pair

Protein crystallography data

The structure of Crystal Structure of Gna with Synthetic Copper Base Pair, PDB code: 2jja was solved by M.K.Schlegel, L.-O.Essen, E.Meggers, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 1.3
Space group I 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 18.160, 48.590, 59.870, 90.00, 90.00, 90.00
R / Rfree (%) 12.4 / 14.8

Copper Binding Sites:

The binding sites of Copper atom in the Crystal Structure of Gna with Synthetic Copper Base Pair (pdb code 2jja). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total only one binding site of Copper was determined in the Crystal Structure of Gna with Synthetic Copper Base Pair, PDB code: 2jja:

Copper binding site 1 out of 1 in 2jja

Go back to Copper Binding Sites List in 2jja
Copper binding site 1 out of 1 in the Crystal Structure of Gna with Synthetic Copper Base Pair


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of Gna with Synthetic Copper Base Pair within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu1001

b:16.6
occ:1.00
O3 A:ZHP6 1.9 16.1 1.0
O4 A:ZHP6 2.0 16.9 1.0
C3 A:ZHP6 2.7 15.4 1.0
C4 A:ZHP6 2.7 17.1 1.0
N1 A:ZCY7 3.3 13.5 1.0
C2 A:ZCY7 3.4 13.2 1.0
C6 A:ZCY7 3.7 14.0 1.0
C1G A:ZCY7 3.7 14.3 1.0
N3 A:ZCY7 3.8 13.0 1.0
O A:HOH2065 3.8 34.0 1.0
O2 A:ZCY7 3.8 14.8 1.0
C5 A:ZCY7 4.0 14.5 1.0
C4 A:ZCY7 4.0 13.8 1.0
C5 A:ZHP6 4.1 17.2 1.0
C2 A:ZHP6 4.1 16.3 1.0
O A:HOH2060 4.2 22.1 1.0
C2M A:ZHP6 4.8 18.0 1.0
N4 A:ZCY7 4.9 14.8 1.0

Reference:

M.K.Schlegel, L.-O.Essen, E.Meggers. Duplex Structure of A Minimal Nucleic Acid. J.Am.Chem.Soc. V. 130 8158 2008.
ISSN: ISSN 0002-7863
PubMed: 18529005
DOI: 10.1021/JA802788G
Page generated: Thu Sep 3 16:44:28 2020
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