Copper in PDB 2i7s: Crystal Structure of Re(Phen)(Co)3 (THR124HIS)(HIS83GLN) Azurin Cu(II) From Pseudomonas Aeruginosa
Protein crystallography data
The structure of Crystal Structure of Re(Phen)(Co)3 (THR124HIS)(HIS83GLN) Azurin Cu(II) From Pseudomonas Aeruginosa, PDB code: 2i7s
was solved by
C.Gradinaru,
B.R.Crane,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
30.00 /
1.35
|
Space group
|
P 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
33.135,
58.980,
66.107,
82.92,
78.11,
76.68
|
R / Rfree (%)
|
n/a /
23.9
|
Other elements in 2i7s:
The structure of Crystal Structure of Re(Phen)(Co)3 (THR124HIS)(HIS83GLN) Azurin Cu(II) From Pseudomonas Aeruginosa also contains other interesting chemical elements:
Copper Binding Sites:
The binding sites of Copper atom in the Crystal Structure of Re(Phen)(Co)3 (THR124HIS)(HIS83GLN) Azurin Cu(II) From Pseudomonas Aeruginosa
(pdb code 2i7s). This binding sites where shown within
5.0 Angstroms radius around Copper atom.
In total 4 binding sites of Copper where determined in the
Crystal Structure of Re(Phen)(Co)3 (THR124HIS)(HIS83GLN) Azurin Cu(II) From Pseudomonas Aeruginosa, PDB code: 2i7s:
Jump to Copper binding site number:
1;
2;
3;
4;
Copper binding site 1 out
of 4 in 2i7s
Go back to
Copper Binding Sites List in 2i7s
Copper binding site 1 out
of 4 in the Crystal Structure of Re(Phen)(Co)3 (THR124HIS)(HIS83GLN) Azurin Cu(II) From Pseudomonas Aeruginosa
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 1 of Crystal Structure of Re(Phen)(Co)3 (THR124HIS)(HIS83GLN) Azurin Cu(II) From Pseudomonas Aeruginosa within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cu901
b:15.7
occ:1.00
|
ND1
|
A:HIS46
|
2.0
|
13.4
|
1.0
|
ND1
|
A:HIS117
|
2.1
|
13.8
|
1.0
|
SG
|
A:CYS112
|
2.3
|
14.1
|
1.0
|
O
|
A:GLY45
|
2.5
|
15.1
|
1.0
|
CE1
|
A:HIS46
|
3.0
|
13.5
|
1.0
|
CE1
|
A:HIS117
|
3.0
|
17.7
|
1.0
|
CG
|
A:HIS46
|
3.0
|
14.1
|
1.0
|
CG
|
A:HIS117
|
3.1
|
14.4
|
1.0
|
CA
|
A:HIS46
|
3.3
|
12.5
|
1.0
|
CB
|
A:CYS112
|
3.4
|
12.9
|
1.0
|
SD
|
A:MET121
|
3.4
|
16.2
|
1.0
|
C
|
A:GLY45
|
3.4
|
16.7
|
1.0
|
CB
|
A:HIS46
|
3.5
|
14.0
|
1.0
|
CB
|
A:HIS117
|
3.5
|
16.0
|
1.0
|
N
|
A:HIS46
|
3.8
|
14.9
|
1.0
|
CB
|
A:PHE114
|
3.8
|
14.2
|
1.0
|
CE
|
A:MET121
|
4.0
|
17.7
|
1.0
|
NE2
|
A:HIS46
|
4.1
|
17.1
|
1.0
|
NE2
|
A:HIS117
|
4.1
|
18.6
|
1.0
|
CD2
|
A:HIS46
|
4.1
|
17.5
|
1.0
|
CD2
|
A:HIS117
|
4.2
|
15.6
|
1.0
|
C
|
A:HIS46
|
4.5
|
12.3
|
1.0
|
N
|
A:ASN47
|
4.6
|
13.2
|
1.0
|
CG
|
A:PHE114
|
4.7
|
13.3
|
1.0
|
N
|
A:PHE114
|
4.8
|
13.6
|
1.0
|
CA
|
A:GLY45
|
4.8
|
16.6
|
1.0
|
CA
|
A:CYS112
|
4.8
|
12.9
|
1.0
|
CA
|
A:PHE114
|
4.9
|
14.0
|
1.0
|
CG
|
A:MET121
|
5.0
|
17.1
|
1.0
|
O
|
A:MET44
|
5.0
|
18.3
|
1.0
|
|
Copper binding site 2 out
of 4 in 2i7s
Go back to
Copper Binding Sites List in 2i7s
Copper binding site 2 out
of 4 in the Crystal Structure of Re(Phen)(Co)3 (THR124HIS)(HIS83GLN) Azurin Cu(II) From Pseudomonas Aeruginosa
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 2 of Crystal Structure of Re(Phen)(Co)3 (THR124HIS)(HIS83GLN) Azurin Cu(II) From Pseudomonas Aeruginosa within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cu902
b:12.0
occ:1.00
|
ND1
|
B:HIS317
|
2.0
|
10.2
|
1.0
|
ND1
|
B:HIS246
|
2.1
|
11.3
|
1.0
|
SG
|
B:CYS312
|
2.3
|
10.0
|
1.0
|
O
|
B:GLY245
|
2.5
|
11.0
|
1.0
|
CE1
|
B:HIS317
|
3.0
|
10.0
|
1.0
|
CE1
|
B:HIS246
|
3.0
|
11.4
|
1.0
|
CG
|
B:HIS317
|
3.0
|
10.6
|
1.0
|
CG
|
B:HIS246
|
3.1
|
10.3
|
1.0
|
SD
|
B:MET321
|
3.3
|
11.2
|
1.0
|
CA
|
B:HIS246
|
3.3
|
10.0
|
1.0
|
CB
|
B:CYS312
|
3.4
|
10.1
|
1.0
|
CB
|
B:HIS317
|
3.5
|
9.8
|
1.0
|
C
|
B:GLY245
|
3.5
|
10.6
|
1.0
|
CB
|
B:HIS246
|
3.5
|
11.4
|
1.0
|
CB
|
B:PHE314
|
3.8
|
8.7
|
1.0
|
N
|
B:HIS246
|
3.9
|
10.2
|
1.0
|
CE
|
B:MET321
|
3.9
|
11.8
|
1.0
|
NE2
|
B:HIS317
|
4.1
|
12.8
|
1.0
|
NE2
|
B:HIS246
|
4.2
|
10.6
|
1.0
|
CD2
|
B:HIS317
|
4.2
|
10.7
|
1.0
|
CD2
|
B:HIS246
|
4.2
|
10.9
|
1.0
|
C
|
B:HIS246
|
4.5
|
10.6
|
1.0
|
N
|
B:ASN247
|
4.6
|
10.7
|
1.0
|
CG
|
B:PHE314
|
4.6
|
10.0
|
1.0
|
CA
|
B:CYS312
|
4.8
|
9.3
|
1.0
|
N
|
B:PHE314
|
4.8
|
9.1
|
1.0
|
CA
|
B:GLY245
|
4.8
|
13.1
|
1.0
|
CG
|
B:MET321
|
4.9
|
11.1
|
1.0
|
O
|
B:MET244
|
5.0
|
16.9
|
1.0
|
CA
|
B:PHE314
|
5.0
|
8.5
|
1.0
|
CA
|
B:HIS317
|
5.0
|
10.7
|
1.0
|
|
Copper binding site 3 out
of 4 in 2i7s
Go back to
Copper Binding Sites List in 2i7s
Copper binding site 3 out
of 4 in the Crystal Structure of Re(Phen)(Co)3 (THR124HIS)(HIS83GLN) Azurin Cu(II) From Pseudomonas Aeruginosa
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 3 of Crystal Structure of Re(Phen)(Co)3 (THR124HIS)(HIS83GLN) Azurin Cu(II) From Pseudomonas Aeruginosa within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cu903
b:17.2
occ:1.00
|
ND1
|
C:HIS517
|
2.0
|
14.1
|
1.0
|
ND1
|
C:HIS446
|
2.0
|
15.4
|
1.0
|
SG
|
C:CYS512
|
2.3
|
14.5
|
1.0
|
O
|
C:GLY445
|
2.5
|
17.4
|
1.0
|
CE1
|
C:HIS517
|
3.0
|
19.4
|
1.0
|
CE1
|
C:HIS446
|
3.0
|
16.8
|
1.0
|
CG
|
C:HIS517
|
3.1
|
14.6
|
1.0
|
CG
|
C:HIS446
|
3.1
|
15.8
|
1.0
|
CA
|
C:HIS446
|
3.3
|
15.6
|
1.0
|
SD
|
C:MET521
|
3.4
|
16.3
|
1.0
|
CB
|
C:CYS512
|
3.4
|
13.3
|
1.0
|
CB
|
C:HIS517
|
3.5
|
16.6
|
1.0
|
C
|
C:GLY445
|
3.5
|
16.9
|
1.0
|
CB
|
C:HIS446
|
3.5
|
15.7
|
1.0
|
CB
|
C:PHE514
|
3.8
|
16.2
|
1.0
|
N
|
C:HIS446
|
3.8
|
15.9
|
1.0
|
CE
|
C:MET521
|
3.9
|
21.1
|
1.0
|
NE2
|
C:HIS517
|
4.1
|
17.7
|
1.0
|
NE2
|
C:HIS446
|
4.1
|
17.2
|
1.0
|
CD2
|
C:HIS517
|
4.2
|
16.3
|
1.0
|
CD2
|
C:HIS446
|
4.2
|
16.6
|
1.0
|
C
|
C:HIS446
|
4.5
|
15.1
|
1.0
|
CG
|
C:PHE514
|
4.6
|
15.9
|
1.0
|
N
|
C:ASN447
|
4.6
|
16.1
|
1.0
|
CA
|
C:CYS512
|
4.8
|
13.5
|
1.0
|
N
|
C:PHE514
|
4.8
|
15.2
|
1.0
|
CA
|
C:GLY445
|
4.9
|
17.6
|
1.0
|
CA
|
C:PHE514
|
4.9
|
15.1
|
1.0
|
CG
|
C:MET521
|
4.9
|
16.8
|
1.0
|
O
|
C:MET444
|
4.9
|
21.6
|
1.0
|
CA
|
C:HIS517
|
5.0
|
14.7
|
1.0
|
|
Copper binding site 4 out
of 4 in 2i7s
Go back to
Copper Binding Sites List in 2i7s
Copper binding site 4 out
of 4 in the Crystal Structure of Re(Phen)(Co)3 (THR124HIS)(HIS83GLN) Azurin Cu(II) From Pseudomonas Aeruginosa
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 4 of Crystal Structure of Re(Phen)(Co)3 (THR124HIS)(HIS83GLN) Azurin Cu(II) From Pseudomonas Aeruginosa within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cu904
b:15.7
occ:1.00
|
ND1
|
D:HIS717
|
2.0
|
11.0
|
1.0
|
ND1
|
D:HIS646
|
2.0
|
14.4
|
1.0
|
SG
|
D:CYS712
|
2.3
|
12.7
|
1.0
|
O
|
D:GLY645
|
2.4
|
15.4
|
1.0
|
CE1
|
D:HIS646
|
3.0
|
15.7
|
1.0
|
CE1
|
D:HIS717
|
3.0
|
16.2
|
1.0
|
CG
|
D:HIS646
|
3.1
|
17.4
|
1.0
|
CG
|
D:HIS717
|
3.1
|
11.3
|
1.0
|
CA
|
D:HIS646
|
3.3
|
15.5
|
1.0
|
C
|
D:GLY645
|
3.4
|
17.8
|
1.0
|
CB
|
D:CYS712
|
3.4
|
12.2
|
1.0
|
SD
|
D:MET721
|
3.5
|
18.5
|
1.0
|
CB
|
D:HIS646
|
3.5
|
15.9
|
1.0
|
CB
|
D:HIS717
|
3.5
|
11.9
|
1.0
|
N
|
D:HIS646
|
3.7
|
17.2
|
1.0
|
CB
|
D:PHE714
|
3.8
|
10.7
|
1.0
|
CE
|
D:MET721
|
4.1
|
20.3
|
1.0
|
NE2
|
D:HIS646
|
4.1
|
20.9
|
1.0
|
NE2
|
D:HIS717
|
4.1
|
12.9
|
1.0
|
CD2
|
D:HIS646
|
4.2
|
19.9
|
1.0
|
CD2
|
D:HIS717
|
4.2
|
12.4
|
1.0
|
C
|
D:HIS646
|
4.5
|
16.5
|
1.0
|
CG
|
D:PHE714
|
4.6
|
11.3
|
1.0
|
N
|
D:ASN647
|
4.6
|
15.3
|
1.0
|
CA
|
D:GLY645
|
4.7
|
17.6
|
1.0
|
CA
|
D:CYS712
|
4.8
|
10.2
|
1.0
|
N
|
D:PHE714
|
4.8
|
10.8
|
1.0
|
CA
|
D:PHE714
|
4.9
|
9.5
|
1.0
|
O
|
D:MET644
|
4.9
|
21.0
|
1.0
|
N
|
D:GLY645
|
5.0
|
16.8
|
1.0
|
|
Reference:
A.M.Blanco-Rodriguez,
M.Busby,
K.Ronayne,
M.Towrie,
C.Gradinaru,
J.Sudhamsu,
J.Sykora,
M.Hof,
S.Zalis,
A.J.Di Bilio,
B.R.Crane,
H.B.Gray,
A.Vlcek.
Relaxation Dynamics of Pseudomonas Aeruginosa Re(I)(Co)3(Alpha-Diimine)(Hisx)+ (X = 83, 107, 109, 124, 126)Cu(II) Azurins. J.Am.Chem.Soc. V. 131 11788 2009.
ISSN: ISSN 0002-7863
PubMed: 19639996
DOI: 10.1021/JA902744S
Page generated: Tue Jul 30 23:42:26 2024
|