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Copper in PDB 2hzh: Crystal Structure of Laccase From Coriolus Zonatus at 2.6 A Resolution

Protein crystallography data

The structure of Crystal Structure of Laccase From Coriolus Zonatus at 2.6 A Resolution, PDB code: 2hzh was solved by A.V.Lyashenko, A.M.Mikhailov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 145.86 / 2.60
Space group P 3 2 1
Cell size a, b, c (Å), α, β, γ (°) 168.930, 168.930, 69.350, 90.00, 90.00, 120.00
R / Rfree (%) 21.1 / 23.8

Copper Binding Sites:

The binding sites of Copper atom in the Crystal Structure of Laccase From Coriolus Zonatus at 2.6 A Resolution (pdb code 2hzh). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 4 binding sites of Copper where determined in the Crystal Structure of Laccase From Coriolus Zonatus at 2.6 A Resolution, PDB code: 2hzh:
Jump to Copper binding site number: 1; 2; 3; 4;

Copper binding site 1 out of 4 in 2hzh

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Copper binding site 1 out of 4 in the Crystal Structure of Laccase From Coriolus Zonatus at 2.6 A Resolution


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of Laccase From Coriolus Zonatus at 2.6 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu601

b:64.1
occ:0.80
SG A:CYS453 2.1 30.1 1.0
ND1 A:HIS458 2.4 35.5 1.0
ND1 A:HIS395 2.5 34.0 1.0
CB A:CYS453 3.2 29.9 1.0
CG A:HIS458 3.2 36.1 1.0
CB A:HIS458 3.4 36.8 1.0
CE1 A:HIS458 3.4 35.6 1.0
CG A:HIS395 3.4 33.4 1.0
CE1 A:HIS395 3.5 34.6 1.0
CB A:HIS395 3.6 32.7 1.0
CD2 A:PHE463 3.7 31.4 1.0
CD1 A:ILE455 3.7 33.0 1.0
CB A:ILE455 3.8 33.5 1.0
CE2 A:PHE463 3.9 31.2 1.0
CG1 A:ILE455 4.1 33.1 1.0
CA A:HIS395 4.2 32.5 1.0
CD2 A:HIS458 4.4 35.1 1.0
NE2 A:HIS458 4.5 34.9 1.0
CA A:CYS453 4.6 29.8 1.0
CG2 A:ILE455 4.6 33.0 1.0
CD2 A:HIS395 4.6 34.3 1.0
NE2 A:HIS395 4.6 34.9 1.0
CD A:PRO396 4.8 29.9 1.0
N A:ILE455 4.9 32.9 1.0
O A:ILE455 4.9 34.1 1.0
O A:GLY392 4.9 40.1 1.0
CA A:HIS458 4.9 37.0 1.0
CA A:ILE455 4.9 33.4 1.0
CG A:PHE463 4.9 31.6 1.0

Copper binding site 2 out of 4 in 2hzh

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Copper binding site 2 out of 4 in the Crystal Structure of Laccase From Coriolus Zonatus at 2.6 A Resolution


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Crystal Structure of Laccase From Coriolus Zonatus at 2.6 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu602

b:32.9
occ:0.83
NE2 A:HIS452 2.0 26.8 1.0
O A:HOH606 2.0 44.1 1.0
NE2 A:HIS111 2.0 26.7 1.0
NE2 A:HIS400 2.0 20.2 1.0
CE1 A:HIS400 2.8 20.0 1.0
CE1 A:HIS111 2.9 26.4 1.0
CD2 A:HIS452 2.9 26.8 1.0
CE1 A:HIS452 3.0 27.0 1.0
CD2 A:HIS111 3.1 26.8 1.0
O A:HOH661 3.2 49.5 1.0
CD2 A:HIS400 3.2 20.6 1.0
CD2 A:HIS398 3.9 23.6 1.0
ND1 A:HIS400 4.0 20.8 1.0
ND1 A:HIS452 4.0 27.0 1.0
ND1 A:HIS111 4.1 26.7 1.0
CG A:HIS452 4.1 27.0 1.0
CG A:HIS111 4.2 26.9 1.0
CG A:HIS400 4.2 21.1 1.0
CU A:CU604 4.3 59.3 1.0
CD2 A:HIS64 4.4 24.1 1.0
CD2 A:PHE450 4.4 22.2 1.0
NE2 A:HIS398 4.5 24.1 1.0
NE2 A:HIS64 4.6 24.4 1.0
CB A:PHE450 4.7 22.2 1.0
CU A:CU603 4.8 40.5 1.0
NE2 A:HIS454 4.9 29.8 1.0
CD2 A:HIS454 4.9 30.5 1.0
CG A:HIS398 5.0 24.2 1.0
CG A:PHE450 5.0 22.3 1.0

Copper binding site 3 out of 4 in 2hzh

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Copper binding site 3 out of 4 in the Crystal Structure of Laccase From Coriolus Zonatus at 2.6 A Resolution


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Crystal Structure of Laccase From Coriolus Zonatus at 2.6 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu603

b:40.5
occ:1.00
ND1 A:HIS66 2.0 23.5 1.0
NE2 A:HIS454 2.2 29.8 1.0
NE2 A:HIS109 2.2 23.1 1.0
O A:HOH606 2.9 44.1 1.0
CE1 A:HIS454 3.0 30.3 1.0
CE1 A:HIS66 3.0 23.1 1.0
CG A:HIS66 3.0 22.6 1.0
CE1 A:HIS109 3.1 23.1 1.0
CD2 A:HIS109 3.2 23.0 1.0
CD2 A:HIS454 3.3 30.5 1.0
CB A:HIS66 3.4 22.5 1.0
CD2 A:HIS64 3.6 24.1 1.0
CZ2 A:TRP107 3.8 21.7 1.0
O A:HOH661 3.9 49.5 1.0
CU A:CU604 3.9 59.3 1.0
NE2 A:HIS64 4.1 24.4 1.0
NE2 A:HIS66 4.1 23.1 1.0
CE2 A:TRP107 4.1 21.2 1.0
ND1 A:HIS454 4.2 30.2 1.0
CD2 A:HIS66 4.2 22.5 1.0
NE1 A:TRP107 4.2 20.8 1.0
CD2 A:HIS398 4.2 23.6 1.0
ND1 A:HIS109 4.3 23.8 1.0
CG A:HIS109 4.3 24.4 1.0
NE2 A:HIS398 4.3 24.1 1.0
CG A:HIS454 4.3 30.7 1.0
CB A:ALA241 4.4 19.2 1.0
CA A:HIS66 4.5 22.8 1.0
CH2 A:TRP107 4.6 21.6 1.0
CU A:CU602 4.8 32.9 0.8
CG A:HIS64 4.9 24.9 1.0

Copper binding site 4 out of 4 in 2hzh

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Copper binding site 4 out of 4 in the Crystal Structure of Laccase From Coriolus Zonatus at 2.6 A Resolution


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Crystal Structure of Laccase From Coriolus Zonatus at 2.6 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu604

b:59.3
occ:1.00
NE2 A:HIS398 1.9 24.1 1.0
NE2 A:HIS64 1.9 24.4 1.0
CE1 A:HIS64 2.8 24.4 1.0
CD2 A:HIS398 2.9 23.6 1.0
CE1 A:HIS398 2.9 24.1 1.0
CD2 A:HIS64 3.0 24.1 1.0
O A:HOH611 3.0 21.0 1.0
CE1 A:HIS400 3.3 20.0 1.0
NE2 A:HIS400 3.3 20.2 1.0
O A:HOH606 3.4 44.1 1.0
ND1 A:HIS66 3.5 23.5 1.0
ND1 A:HIS400 3.6 20.8 1.0
CD2 A:HIS400 3.6 20.6 1.0
CG A:HIS66 3.7 22.6 1.0
CG A:HIS400 3.8 21.1 1.0
CE1 A:HIS66 3.9 23.1 1.0
CA A:HIS66 3.9 22.8 1.0
CU A:CU603 3.9 40.5 1.0
ND1 A:HIS64 4.0 24.8 1.0
ND1 A:HIS398 4.0 24.1 1.0
CG A:HIS398 4.0 24.2 1.0
CG A:HIS64 4.0 24.9 1.0
CB A:HIS66 4.1 22.5 1.0
CD2 A:HIS66 4.1 22.5 1.0
NE2 A:HIS66 4.2 23.1 1.0
N A:GLY67 4.3 22.7 1.0
CU A:CU602 4.3 32.9 0.8
C A:HIS66 4.6 22.7 1.0
CA A:HIS400 4.7 21.6 1.0
CB A:HIS400 4.7 21.6 1.0
O A:HOH622 4.7 15.8 1.0
N A:HIS66 4.8 23.1 1.0
O A:LEU399 5.0 22.1 1.0

Reference:

A.V.Lyashenko, N.E.Zhukhlistova, A.G.Gabdoulkhakov, Y.N.Zhukova, W.Voelter, V.N.Zaitsev, I.Bento, E.V.Stepanova, G.S.Kachalova, O.V.Koroleva, C.Betzel, P.F.Lindley, A.M.Mikhailov, V.I.Tishkov, E.Y.Morgunova. Crystal Structure of Laccase From Coriolus Zonatus at 2.6 A Resolution To Be Published.
Page generated: Sun Dec 13 11:05:13 2020

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