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Copper in PDB 2h5u: Crystal Structure of Laccase From Cerrena Maxima at 1.9A Resolution

Enzymatic activity of Crystal Structure of Laccase From Cerrena Maxima at 1.9A Resolution

All present enzymatic activity of Crystal Structure of Laccase From Cerrena Maxima at 1.9A Resolution:
1.10.3.2;

Protein crystallography data

The structure of Crystal Structure of Laccase From Cerrena Maxima at 1.9A Resolution, PDB code: 2h5u was solved by A.V.Lyashenko, A.G.Gabdoulkhakov, V.N.Zaitsev, V.S.Lamzin, P.F.Lindley, I.Bento, C.Betzel, N.E.Zhukhlistova, Y.N.Zhukova, A.M.Mikhailov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.27 / 1.90
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 52.581, 77.101, 130.884, 90.00, 90.00, 90.00
R / Rfree (%) 19 / 23.8

Copper Binding Sites:

The binding sites of Copper atom in the Crystal Structure of Laccase From Cerrena Maxima at 1.9A Resolution (pdb code 2h5u). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 4 binding sites of Copper where determined in the Crystal Structure of Laccase From Cerrena Maxima at 1.9A Resolution, PDB code: 2h5u:
Jump to Copper binding site number: 1; 2; 3; 4;

Copper binding site 1 out of 4 in 2h5u

Go back to Copper Binding Sites List in 2h5u
Copper binding site 1 out of 4 in the Crystal Structure of Laccase From Cerrena Maxima at 1.9A Resolution


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of Laccase From Cerrena Maxima at 1.9A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu601

b:12.9
occ:0.30
ND1 A:HIS458 2.0 12.6 1.0
ND1 A:HIS395 2.0 14.9 1.0
SG A:CYS453 2.3 11.5 1.0
CE1 A:HIS395 2.7 16.2 1.0
CE1 A:HIS458 2.9 11.8 1.0
CG A:HIS458 3.0 12.0 1.0
CG A:HIS395 3.1 14.6 1.0
CB A:HIS458 3.4 11.9 1.0
CB A:CYS453 3.6 9.8 1.0
CD1 A:ILE455 3.6 10.7 1.0
CB A:HIS395 3.7 13.8 1.0
CD2 A:PHE463 3.7 9.6 1.0
CE2 A:PHE463 3.9 10.3 1.0
NE2 A:HIS395 3.9 16.2 1.0
CB A:ILE455 4.0 10.7 1.0
NE2 A:HIS458 4.1 12.2 1.0
CD2 A:HIS395 4.1 15.3 1.0
CD2 A:HIS458 4.1 11.8 1.0
CG1 A:ILE455 4.2 10.7 1.0
CA A:HIS395 4.2 13.8 1.0
O A:GLY392 4.5 19.8 1.0
CG2 A:ILE455 4.7 10.6 1.0
CD A:PRO396 4.9 11.9 1.0
CA A:HIS458 4.9 11.9 1.0
CZ A:PHE337 4.9 10.7 1.0
CA A:CYS453 4.9 9.8 1.0

Copper binding site 2 out of 4 in 2h5u

Go back to Copper Binding Sites List in 2h5u
Copper binding site 2 out of 4 in the Crystal Structure of Laccase From Cerrena Maxima at 1.9A Resolution


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Crystal Structure of Laccase From Cerrena Maxima at 1.9A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu602

b:11.8
occ:1.00
ND1 A:HIS66 2.0 7.5 1.0
NE2 A:HIS454 2.0 10.1 1.0
NE2 A:HIS109 2.0 6.7 1.0
CE1 A:HIS454 2.8 8.9 1.0
CE1 A:HIS66 2.8 7.2 1.0
CE1 A:HIS109 2.9 6.0 1.0
O A:HOH1132 3.0 22.6 1.0
CD2 A:HIS109 3.1 5.3 1.0
CG A:HIS66 3.1 6.7 1.0
CD2 A:HIS454 3.1 9.6 1.0
CZ2 A:TRP107 3.6 4.1 1.0
CB A:HIS66 3.6 6.4 1.0
CD2 A:HIS64 3.7 6.1 1.0
CE2 A:TRP107 3.9 4.2 1.0
ND1 A:HIS454 4.0 9.2 1.0
ND1 A:HIS109 4.0 5.3 1.0
NE2 A:HIS66 4.0 6.2 1.0
NE1 A:TRP107 4.1 3.9 1.0
CU A:CU604 4.1 8.6 0.5
CG A:HIS109 4.1 5.5 1.0
CD2 A:HIS66 4.2 6.2 1.0
CG A:HIS454 4.2 9.7 1.0
NE2 A:HIS64 4.2 6.4 1.0
CH2 A:TRP107 4.3 4.3 1.0
CD2 A:HIS398 4.4 7.6 1.0
CB A:ALA241 4.4 5.6 1.0
O A:HOH1109 4.4 18.9 0.8
NE2 A:HIS398 4.6 8.1 1.0
CA A:HIS66 4.7 6.2 1.0
CU A:CU603 4.8 12.7 1.0
CD2 A:TRP107 4.9 3.8 1.0
CG A:HIS64 4.9 6.9 1.0

Copper binding site 3 out of 4 in 2h5u

Go back to Copper Binding Sites List in 2h5u
Copper binding site 3 out of 4 in the Crystal Structure of Laccase From Cerrena Maxima at 1.9A Resolution


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Crystal Structure of Laccase From Cerrena Maxima at 1.9A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu603

b:12.7
occ:1.00
O A:HOH1132 1.8 22.6 1.0
NE2 A:HIS400 2.0 8.4 1.0
NE2 A:HIS452 2.0 9.8 1.0
NE2 A:HIS111 2.0 7.9 1.0
CE1 A:HIS400 2.7 7.4 1.0
CE1 A:HIS111 2.9 7.2 1.0
CD2 A:HIS452 3.0 9.3 1.0
CE1 A:HIS452 3.0 9.4 1.0
CD2 A:HIS111 3.0 6.8 1.0
CD2 A:HIS400 3.2 7.0 1.0
O A:HOH1109 3.7 18.9 0.8
ND1 A:HIS400 3.9 6.8 1.0
CD2 A:HIS398 4.0 7.6 1.0
ND1 A:HIS452 4.1 9.5 1.0
ND1 A:HIS111 4.1 6.9 1.0
CG A:HIS452 4.1 8.8 1.0
CG A:HIS111 4.1 6.6 1.0
CG A:HIS400 4.2 7.3 1.0
CD2 A:PHE450 4.3 6.7 1.0
CU A:CU604 4.4 8.6 0.5
CD2 A:HIS64 4.5 6.1 1.0
NE2 A:HIS454 4.6 10.1 1.0
CB A:PHE450 4.6 7.1 1.0
CD2 A:HIS454 4.7 9.6 1.0
NE2 A:HIS64 4.7 6.4 1.0
CG A:PRO79 4.7 7.2 1.0
NE2 A:HIS398 4.8 8.1 1.0
CU A:CU602 4.8 11.8 1.0
CG A:PHE450 4.9 6.8 1.0
CE1 A:HIS109 4.9 6.0 1.0

Copper binding site 4 out of 4 in 2h5u

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Copper binding site 4 out of 4 in the Crystal Structure of Laccase From Cerrena Maxima at 1.9A Resolution


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Crystal Structure of Laccase From Cerrena Maxima at 1.9A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu604

b:8.6
occ:0.50
NE2 A:HIS398 2.0 8.1 1.0
NE2 A:HIS64 2.0 6.4 1.0
O A:HOH607 2.6 4.8 1.0
CD2 A:HIS398 2.8 7.6 1.0
CE1 A:HIS64 2.9 6.4 1.0
CD2 A:HIS64 3.0 6.1 1.0
CE1 A:HIS398 3.1 7.8 1.0
NE2 A:HIS400 3.4 8.4 1.0
CE1 A:HIS400 3.4 7.4 1.0
ND1 A:HIS66 3.5 7.5 1.0
ND1 A:HIS400 3.6 6.8 1.0
CD2 A:HIS400 3.6 7.0 1.0
CG A:HIS66 3.6 6.7 1.0
O A:HOH1132 3.7 22.6 1.0
CG A:HIS400 3.7 7.3 1.0
CE1 A:HIS66 3.8 7.2 1.0
CA A:HIS66 3.9 6.2 1.0
ND1 A:HIS64 4.0 6.4 1.0
CG A:HIS398 4.0 8.1 1.0
CD2 A:HIS66 4.0 6.2 1.0
N A:GLY67 4.0 6.1 1.0
NE2 A:HIS66 4.1 6.2 1.0
ND1 A:HIS398 4.1 8.3 1.0
CU A:CU602 4.1 11.8 1.0
CG A:HIS64 4.1 6.9 1.0
CB A:HIS66 4.1 6.4 1.0
CU A:CU603 4.4 12.7 1.0
C A:HIS66 4.5 6.3 1.0
O A:HOH632 4.5 10.9 1.0
CA A:HIS400 4.5 7.4 1.0
CB A:HIS400 4.6 7.3 1.0
O A:HOH724 4.7 13.8 1.0
N A:HIS66 4.9 6.2 1.0

Reference:

A.V.Lyashenko, N.E.Zhukhlistova, A.G.Gabdoulkhakov, V.N.Zaitsev, I.Bento, V.S.Lamzin, C.Betzel, P.F.Lindley, O.V.Koroleva, Y.N.Zhukova, E.V.Stepanova, E.Y.Morgunova, W.Voelter, K.Schirwitz, V.I.Tishkov, G.S.Kachalova, E.A.Cherkashyn, A.M.Mikhailov. Purification, Crystallization and Preliminary X-Ray Study of the Fungal Laccase From Cerrena Maxima Acta Crystallogr.,Sect.F V. 62 954 2006.
ISSN: ESSN 1744-3091
PubMed: 17012782
DOI: 10.1107/S1744309106036578
Page generated: Thu Sep 3 16:41:13 2020
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