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Copper in PDB 2h3x: Crystal Structure of An Electron Transfer Complex Between Aromatic Amine Dehydrogenase and Azurin From Alcaligenes Faecalis (Form 3)

Enzymatic activity of Crystal Structure of An Electron Transfer Complex Between Aromatic Amine Dehydrogenase and Azurin From Alcaligenes Faecalis (Form 3)

All present enzymatic activity of Crystal Structure of An Electron Transfer Complex Between Aromatic Amine Dehydrogenase and Azurin From Alcaligenes Faecalis (Form 3):
1.4.99.4;

Protein crystallography data

The structure of Crystal Structure of An Electron Transfer Complex Between Aromatic Amine Dehydrogenase and Azurin From Alcaligenes Faecalis (Form 3), PDB code: 2h3x was solved by N.Sukumar, Z.Chen, D.Leys, N.S.Scrutton, D.Ferrati, A.Merli, G.L.Rossi, H.D.Bellamy, A.Chistoserdov, V.L.Davidson, F.S.Mathews, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.00 / 2.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 64.953, 94.762, 211.482, 90.00, 90.00, 90.00
R / Rfree (%) 18.3 / 23

Copper Binding Sites:

The binding sites of Copper atom in the Crystal Structure of An Electron Transfer Complex Between Aromatic Amine Dehydrogenase and Azurin From Alcaligenes Faecalis (Form 3) (pdb code 2h3x). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the Crystal Structure of An Electron Transfer Complex Between Aromatic Amine Dehydrogenase and Azurin From Alcaligenes Faecalis (Form 3), PDB code: 2h3x:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in 2h3x

Go back to Copper Binding Sites List in 2h3x
Copper binding site 1 out of 2 in the Crystal Structure of An Electron Transfer Complex Between Aromatic Amine Dehydrogenase and Azurin From Alcaligenes Faecalis (Form 3)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of An Electron Transfer Complex Between Aromatic Amine Dehydrogenase and Azurin From Alcaligenes Faecalis (Form 3) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cu130

b:49.1
occ:1.00
ND1 C:HIS117 2.2 46.3 1.0
ND1 C:HIS46 2.2 34.0 1.0
SG C:CYS112 2.3 39.6 1.0
CG C:HIS117 3.1 44.5 1.0
SD C:MET121 3.1 45.1 1.0
CE1 C:HIS46 3.2 36.9 1.0
O C:GLY45 3.2 27.8 1.0
CE1 C:HIS117 3.2 43.9 1.0
CG C:HIS46 3.2 36.3 1.0
CB C:CYS112 3.3 40.8 1.0
CB C:HIS117 3.4 45.0 1.0
CA C:HIS46 3.4 30.3 1.0
CB C:HIS46 3.5 31.1 1.0
CE C:MET121 3.8 46.7 1.0
CB C:PHE114 3.8 34.5 1.0
C C:GLY45 4.0 29.5 1.0
N C:HIS46 4.2 28.6 1.0
NE2 C:HIS46 4.3 32.8 1.0
CD2 C:HIS117 4.3 45.2 1.0
NE2 C:HIS117 4.3 46.9 1.0
CD2 C:HIS46 4.3 33.1 1.0
N C:ASN47 4.5 30.1 1.0
C C:HIS46 4.5 29.2 1.0
CG C:PHE114 4.6 32.9 1.0
CG C:MET121 4.7 51.0 1.0
CA C:CYS112 4.7 40.7 1.0
CA C:HIS117 4.9 47.5 1.0
CA C:PHE114 5.0 32.9 1.0
CB C:MET121 5.0 57.8 1.0
N C:PHE114 5.0 30.9 1.0
O C:PHE114 5.0 29.1 1.0

Copper binding site 2 out of 2 in 2h3x

Go back to Copper Binding Sites List in 2h3x
Copper binding site 2 out of 2 in the Crystal Structure of An Electron Transfer Complex Between Aromatic Amine Dehydrogenase and Azurin From Alcaligenes Faecalis (Form 3)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Crystal Structure of An Electron Transfer Complex Between Aromatic Amine Dehydrogenase and Azurin From Alcaligenes Faecalis (Form 3) within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Cu130

b:50.6
occ:1.00
ND1 F:HIS46 2.2 35.9 1.0
SG F:CYS112 2.3 47.4 1.0
ND1 F:HIS117 2.3 52.9 1.0
SD F:MET121 3.1 50.2 1.0
CG F:HIS46 3.1 41.1 1.0
CE1 F:HIS46 3.1 38.0 1.0
O F:GLY45 3.2 40.7 1.0
CB F:CYS112 3.3 39.8 1.0
CG F:HIS117 3.3 51.5 1.0
CA F:HIS46 3.3 37.9 1.0
CE1 F:HIS117 3.3 50.7 1.0
CB F:HIS46 3.4 35.1 1.0
CB F:HIS117 3.5 51.8 1.0
CE F:MET121 3.7 49.8 1.0
CB F:PHE114 3.9 38.8 1.0
C F:GLY45 4.0 38.7 1.0
N F:HIS46 4.1 36.6 1.0
NE2 F:HIS46 4.3 36.5 1.0
CD2 F:HIS46 4.3 37.9 1.0
N F:ASN47 4.4 39.5 1.0
C F:HIS46 4.4 39.4 1.0
CD2 F:HIS117 4.4 50.1 1.0
NE2 F:HIS117 4.4 52.4 1.0
CG F:PHE114 4.6 38.1 1.0
CG F:MET121 4.7 52.7 1.0
CA F:CYS112 4.7 43.5 1.0
CB F:MET121 5.0 59.1 1.0

Reference:

N.Sukumar, Z.Chen, D.Ferrari, A.Merli, G.L.Rossi, H.D.Bellamy, A.Chistoserdov, V.L.Davidson, F.S.Mathews. Crystal Structure of An Electron Transfer Complex Between Aromatic Amine Dehydrogenase and Azurin From Alcaligenes Faecalis. Biochemistry V. 45 13500 2006.
ISSN: ISSN 0006-2960
PubMed: 17087503
DOI: 10.1021/BI0612972
Page generated: Thu Sep 3 16:40:59 2020
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