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Copper in PDB 2gim: 1.6 Angstrom Structure of Plastocyanin From Anabaena Variabilis

Protein crystallography data

The structure of 1.6 Angstrom Structure of Plastocyanin From Anabaena Variabilis, PDB code: 2gim was solved by L.Schmidt, P.Harris, H.E.M.Christensen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.19 / 1.60
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 67.850, 45.810, 63.410, 90.00, 90.00, 90.00
R / Rfree (%) 20.9 / 26

Copper Binding Sites:

The binding sites of Copper atom in the 1.6 Angstrom Structure of Plastocyanin From Anabaena Variabilis (pdb code 2gim). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the 1.6 Angstrom Structure of Plastocyanin From Anabaena Variabilis, PDB code: 2gim:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in 2gim

Go back to Copper Binding Sites List in 2gim
Copper binding site 1 out of 2 in the 1.6 Angstrom Structure of Plastocyanin From Anabaena Variabilis


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of 1.6 Angstrom Structure of Plastocyanin From Anabaena Variabilis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu106

b:17.4
occ:1.00
ND1 A:HIS39 2.1 15.7 1.0
ND1 A:HIS92 2.1 11.1 1.0
SG A:CYS89 2.1 15.3 1.0
SD A:MET97 2.8 12.7 1.0
CE1 A:HIS39 3.0 15.3 1.0
CG A:HIS92 3.0 15.3 1.0
CE1 A:HIS92 3.1 14.2 1.0
CG A:HIS39 3.1 13.6 1.0
CB A:CYS89 3.1 17.7 1.0
CB A:HIS92 3.3 17.2 1.0
CE A:MET97 3.4 12.8 1.0
CB A:HIS39 3.4 14.0 1.0
O A:PRO38 3.5 22.2 1.0
CA A:HIS39 3.6 14.6 1.0
CG A:MET97 4.0 13.0 1.0
NE2 A:HIS39 4.1 14.9 1.0
CD2 A:HIS92 4.1 15.4 1.0
NE2 A:HIS92 4.2 14.5 1.0
CD2 A:HIS39 4.2 14.1 1.0
C A:PRO38 4.2 19.9 1.0
N A:HIS92 4.3 15.6 1.0
N A:HIS39 4.3 14.4 1.0
CA A:HIS92 4.4 14.8 1.0
CB A:MET97 4.5 11.3 1.0
CA A:CYS89 4.5 13.7 1.0
CG A:PRO91 4.7 17.6 1.0
C A:HIS39 4.7 13.2 1.0
N A:ASN40 4.7 12.9 1.0
CB A:PRO91 5.0 18.6 1.0
C A:CYS89 5.0 15.5 1.0

Copper binding site 2 out of 2 in 2gim

Go back to Copper Binding Sites List in 2gim
Copper binding site 2 out of 2 in the 1.6 Angstrom Structure of Plastocyanin From Anabaena Variabilis


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of 1.6 Angstrom Structure of Plastocyanin From Anabaena Variabilis within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cu107

b:18.9
occ:1.00
ND1 C:HIS39 2.0 15.3 1.0
ND1 C:HIS92 2.1 15.3 1.0
SG C:CYS89 2.2 18.1 1.0
SD C:MET97 2.7 15.5 1.0
CE1 C:HIS39 2.8 15.3 1.0
CE1 C:HIS92 3.0 17.3 1.0
CG C:HIS92 3.0 16.2 1.0
CG C:HIS39 3.1 14.2 1.0
CB C:CYS89 3.3 16.8 1.0
CB C:HIS92 3.4 15.6 1.0
CE C:MET97 3.5 13.5 1.0
O C:PRO38 3.5 21.4 1.0
CB C:HIS39 3.6 15.8 1.0
CA C:HIS39 3.7 15.4 1.0
NE2 C:HIS39 4.0 14.9 1.0
NE2 C:HIS92 4.1 16.4 1.0
CD2 C:HIS92 4.1 15.4 1.0
CG C:MET97 4.2 13.3 1.0
CD2 C:HIS39 4.2 15.7 1.0
C C:PRO38 4.2 20.1 1.0
N C:HIS92 4.3 14.9 1.0
N C:HIS39 4.4 16.0 1.0
CA C:HIS92 4.5 14.6 1.0
CB C:MET97 4.5 13.1 1.0
CA C:CYS89 4.7 15.8 1.0
N C:ASN40 4.8 14.4 1.0
C C:HIS39 4.8 14.2 1.0
CB C:PRO91 5.0 18.4 1.0

Reference:

L.Schmidt, H.E.Christensen, P.Harris. Structure of Plastocyanin From the Cyanobacterium Anabaena Variabilis. Acta Crystallogr.,Sect.D V. 62 1022 2006.
ISSN: ISSN 0907-4449
PubMed: 16929103
DOI: 10.1107/S0907444906023638
Page generated: Sun Dec 13 11:04:58 2020

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