Copper in PDB 2fta: Structure of Cu(II)Azurin with the Metal-Binding Loop Sequence "Ctfpghsalm" Replaced with "Ctphpfm"

The structure of Structure of Cu(II)Azurin with the Metal-Binding Loop Sequence "Ctfpghsalm" Replaced with "Ctphpfm", PDB code: 2fta was solved by M.J.Banfield, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 1.61
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	36.840, 97.630, 61.120, 90.00, 94.31, 90.00
R / Rfree (%)	23.3 / 26.9

The binding sites of Copper atom in the Structure of Cu(II)Azurin with the Metal-Binding Loop Sequence "Ctfpghsalm" Replaced with "Ctphpfm" (pdb code 2fta). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 4 binding sites of Copper where determined in the Structure of Cu(II)Azurin with the Metal-Binding Loop Sequence "Ctfpghsalm" Replaced with "Ctphpfm", PDB code: 2fta:
Jump to Copper binding site number: 1; 2; 3; 4;

Copper binding site 1 out of 4 in the Structure of Cu(II)Azurin with the Metal-Binding Loop Sequence "Ctfpghsalm" Replaced with "Ctphpfm"


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Structure of Cu(II)Azurin with the Metal-Binding Loop Sequence "Ctfpghsalm" Replaced with "Ctphpfm" within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu126 b:18.6 occ:1.00 ND1 A:HIS46 2.0 16.5 1.0 ND1 A:HIS115 2.1 20.2 1.0 SG A:CYS112 2.1 16.6 1.0 CE1 A:HIS46 2.9 18.5 1.0 CG A:HIS46 3.0 17.5 1.0 CG A:HIS115 3.0 18.2 1.0 CE1 A:HIS115 3.2 21.6 1.0 O A:GLY45 3.2 17.7 1.0 SD A:MET118 3.2 16.8 1.0 CB A:HIS115 3.3 17.3 1.0 CB A:CYS112 3.3 14.5 1.0 CA A:HIS46 3.4 16.5 1.0 CB A:HIS46 3.4 17.8 1.0 NE2 A:HIS46 4.0 18.4 1.0 C A:GLY45 4.1 18.7 1.0 CD2 A:HIS46 4.1 17.9 1.0 CE A:MET118 4.1 18.7 1.0 N A:HIS115 4.1 16.2 1.0 CG A:PRO114 4.1 16.1 1.0 N A:HIS46 4.2 16.9 1.0 CD2 A:HIS115 4.2 20.0 1.0 NE2 A:HIS115 4.2 20.8 1.0 CA A:HIS115 4.3 16.4 1.0 C A:HIS46 4.6 17.3 1.0 N A:ASN47 4.6 16.7 1.0 CA A:CYS112 4.7 15.6 1.0 CG A:MET118 4.7 17.8 1.0 CD A:PRO114 4.7 17.8 1.0 O A:HIS115 4.8 16.1 1.0 C A:PRO114 4.8 17.8 1.0 C A:HIS115 5.0 14.1 1.0

Copper binding site 2 out of 4 in the Structure of Cu(II)Azurin with the Metal-Binding Loop Sequence "Ctfpghsalm" Replaced with "Ctphpfm"


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Structure of Cu(II)Azurin with the Metal-Binding Loop Sequence "Ctfpghsalm" Replaced with "Ctphpfm" within 5.0Å range: probe atom residue distance (Å) B Occ B:Cu126 b:15.1 occ:1.00 ND1 B:HIS46 2.0 6.9 1.0 ND1 B:HIS115 2.0 16.2 1.0 SG B:CYS112 2.2 10.8 1.0 CE1 B:HIS46 2.9 13.3 1.0 CE1 B:HIS115 3.0 14.5 1.0 CG B:HIS115 3.0 12.1 1.0 CG B:HIS46 3.1 10.4 1.0 O B:GLY45 3.1 12.6 1.0 CB B:CYS112 3.3 11.3 1.0 CB B:HIS115 3.4 13.4 1.0 CA B:HIS46 3.4 11.4 1.0 SD B:MET118 3.4 12.3 1.0 CB B:HIS46 3.4 11.5 1.0 C B:GLY45 3.9 11.6 1.0 CE B:MET118 4.0 15.1 1.0 CG B:PRO114 4.1 15.1 1.0 NE2 B:HIS46 4.1 12.4 1.0 N B:HIS46 4.1 12.3 1.0 N B:HIS115 4.1 16.3 1.0 NE2 B:HIS115 4.1 14.2 1.0 CD2 B:HIS46 4.1 13.1 1.0 CD2 B:HIS115 4.2 13.5 1.0 CA B:HIS115 4.3 15.9 1.0 C B:HIS46 4.6 12.5 1.0 N B:ASN47 4.6 11.4 1.0 CA B:CYS112 4.7 10.9 1.0 CD B:PRO114 4.7 15.3 1.0 CG B:MET118 4.8 12.5 1.0 O B:HIS115 4.8 12.9 1.0 C B:PRO114 4.9 17.2 1.0 CB B:PRO114 5.0 12.5 1.0

Copper binding site 3 out of 4 in the Structure of Cu(II)Azurin with the Metal-Binding Loop Sequence "Ctfpghsalm" Replaced with "Ctphpfm"


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Structure of Cu(II)Azurin with the Metal-Binding Loop Sequence "Ctfpghsalm" Replaced with "Ctphpfm" within 5.0Å range: probe atom residue distance (Å) B Occ C:Cu126 b:18.9 occ:1.00 SG C:CYS112 2.0 17.6 1.0 ND1 C:HIS46 2.0 11.4 1.0 ND1 C:HIS115 2.1 13.4 1.0 CE1 C:HIS46 2.9 12.8 1.0 CG C:HIS115 3.1 16.1 1.0 CE1 C:HIS115 3.1 15.8 1.0 CG C:HIS46 3.1 13.9 1.0 O C:GLY45 3.1 18.8 1.0 CB C:CYS112 3.2 17.3 1.0 SD C:MET118 3.3 14.8 1.0 CB C:HIS115 3.4 17.8 1.0 CA C:HIS46 3.4 14.9 1.0 CB C:HIS46 3.5 13.0 1.0 C C:GLY45 3.9 17.6 1.0 CG C:PRO114 4.1 18.8 1.0 NE2 C:HIS46 4.1 12.8 1.0 N C:HIS115 4.1 17.8 1.0 N C:HIS46 4.1 17.1 1.0 CE C:MET118 4.1 13.8 1.0 NE2 C:HIS115 4.2 18.2 1.0 CD2 C:HIS46 4.2 13.9 1.0 CD2 C:HIS115 4.2 15.6 1.0 CA C:HIS115 4.3 18.7 1.0 C C:HIS46 4.6 15.8 1.0 CA C:CYS112 4.6 16.3 1.0 N C:ASN47 4.6 15.9 1.0 CG C:MET118 4.7 13.7 1.0 CD C:PRO114 4.8 16.5 1.0 O C:HIS115 4.8 20.3 1.0 C C:PRO114 5.0 17.7 1.0

Copper binding site 4 out of 4 in the Structure of Cu(II)Azurin with the Metal-Binding Loop Sequence "Ctfpghsalm" Replaced with "Ctphpfm"


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Structure of Cu(II)Azurin with the Metal-Binding Loop Sequence "Ctfpghsalm" Replaced with "Ctphpfm" within 5.0Å range: probe atom residue distance (Å) B Occ D:Cu126 b:25.0 occ:1.00 ND1 D:HIS46 1.9 24.0 1.0 ND1 D:HIS115 2.1 22.4 1.0 SG D:CYS112 2.3 20.4 1.0 CE1 D:HIS46 2.8 23.8 1.0 CG D:HIS115 3.0 22.6 1.0 CG D:HIS46 3.0 23.6 1.0 CE1 D:HIS115 3.1 23.4 1.0 SD D:MET118 3.2 21.3 1.0 CB D:HIS115 3.2 20.9 1.0 O D:GLY45 3.3 22.9 1.0 CB D:CYS112 3.4 17.9 1.0 CA D:HIS46 3.4 20.9 1.0 CB D:HIS46 3.5 22.0 1.0 NE2 D:HIS46 4.0 22.8 1.0 CG D:PRO114 4.0 24.3 1.0 N D:HIS115 4.0 21.9 1.0 CD2 D:HIS46 4.1 23.7 1.0 C D:GLY45 4.1 24.2 1.0 CD2 D:HIS115 4.2 23.8 1.0 CE D:MET118 4.2 20.1 1.0 N D:HIS46 4.2 21.5 1.0 NE2 D:HIS115 4.2 24.2 1.0 CA D:HIS115 4.2 21.5 1.0 C D:HIS46 4.6 19.4 1.0 N D:ASN47 4.6 19.8 1.0 CG D:MET118 4.7 21.0 1.0 O D:HIS115 4.7 21.9 1.0 CA D:CYS112 4.8 19.0 1.0 CD D:PRO114 4.8 24.4 1.0 C D:PRO114 4.8 23.8 1.0 C D:HIS115 4.9 20.6 1.0 CB D:PRO114 4.9 24.1 1.0 CB D:MET118 5.0 22.1 1.0

C.Li, S.Yanagisawa, B.M.Martins, A.Messerschmidt, M.J.Banfield, C.Dennison. Basic Requirements For A Metal-Binding Site in A Protein: the Influence of Loop Shortening on the Cupredoxin Azurin. Proc.Natl.Acad.Sci.Usa V. 103 7258 2006.
ISSN: ISSN 0027-8424
PubMed: 16651527
DOI: 10.1073/PNAS.0600774103