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Copper in PDB 2cj3: Crystal Structure of Plastocyanin From A Cyanobacterium, Anabaena Variabilis

Protein crystallography data

The structure of Crystal Structure of Plastocyanin From A Cyanobacterium, Anabaena Variabilis, PDB code: 2cj3 was solved by B.A.Fields, A.P.Duff, K.Govinderaju, M.P.Jackman, H.W.Lee, W.B.Church, J.M.Guss, A.G.Sykes, H.C.Freeman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.84 / 1.70
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 37.290, 68.480, 42.260, 90.00, 109.97, 90.00
R / Rfree (%) 14 / 16.3

Copper Binding Sites:

The binding sites of Copper atom in the Crystal Structure of Plastocyanin From A Cyanobacterium, Anabaena Variabilis (pdb code 2cj3). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the Crystal Structure of Plastocyanin From A Cyanobacterium, Anabaena Variabilis, PDB code: 2cj3:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in 2cj3

Go back to Copper Binding Sites List in 2cj3
Copper binding site 1 out of 2 in the Crystal Structure of Plastocyanin From A Cyanobacterium, Anabaena Variabilis


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of Plastocyanin From A Cyanobacterium, Anabaena Variabilis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu106

b:16.2
occ:1.00
ND1 A:HIS39 2.0 12.3 1.0
ND1 A:HIS92 2.1 14.3 1.0
SG A:CYS89 2.2 14.3 1.0
HB2 A:HIS92 2.7 14.8 1.0
HA A:HIS39 2.8 12.6 1.0
SD A:MET97 2.8 14.1 1.0
CE1 A:HIS39 2.9 10.1 1.0
CG A:HIS92 3.1 17.3 1.0
HE1 A:HIS39 3.1 11.3 1.0
CE1 A:HIS92 3.1 19.0 1.0
CG A:HIS39 3.1 9.9 1.0
HE1 A:HIS92 3.3 15.8 1.0
CB A:CYS89 3.3 12.4 1.0
HB3 A:CYS89 3.3 13.3 1.0
HB3 A:HIS39 3.3 12.1 1.0
CB A:HIS92 3.4 13.9 1.0
HB2 A:CYS89 3.4 13.3 1.0
HE2 A:MET97 3.5 16.1 1.0
CB A:HIS39 3.5 12.0 1.0
CA A:HIS39 3.6 12.8 1.0
CE A:MET97 3.6 17.0 1.0
O A:PRO38 3.6 16.9 1.0
HE3 A:MET97 3.6 16.1 1.0
HG2 A:PRO91 3.8 17.1 1.0
H A:HIS92 3.9 13.0 1.0
HB3 A:HIS92 3.9 14.8 1.0
NE2 A:HIS39 4.1 11.2 1.0
NE2 A:HIS92 4.2 15.2 1.0
CD2 A:HIS39 4.2 12.5 1.0
CD2 A:HIS92 4.2 14.6 1.0
H A:ASN40 4.2 14.5 1.0
CG A:MET97 4.3 15.9 1.0
HB3 A:MET97 4.3 13.4 1.0
N A:HIS92 4.4 12.2 1.0
C A:PRO38 4.4 13.8 1.0
N A:HIS39 4.4 12.5 1.0
HG2 A:MET97 4.4 14.9 1.0
HD23 A:LEU14 4.4 18.0 1.0
HB2 A:HIS39 4.5 12.1 1.0
CA A:HIS92 4.5 14.7 1.0
HE1 A:MET97 4.5 16.1 1.0
HB2 A:MET97 4.6 13.4 1.0
HD2 A:PRO91 4.6 14.9 1.0
CB A:MET97 4.6 13.4 1.0
CA A:CYS89 4.7 13.6 1.0
HB2 A:PRO91 4.7 17.1 1.0
CG A:PRO91 4.7 17.3 1.0
C A:HIS39 4.7 12.7 1.0
N A:ASN40 4.7 15.5 1.0
HB3 A:LEU14 4.9 16.5 1.0

Copper binding site 2 out of 2 in 2cj3

Go back to Copper Binding Sites List in 2cj3
Copper binding site 2 out of 2 in the Crystal Structure of Plastocyanin From A Cyanobacterium, Anabaena Variabilis


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Crystal Structure of Plastocyanin From A Cyanobacterium, Anabaena Variabilis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu106

b:16.5
occ:1.00
ND1 B:HIS39 2.0 13.1 1.0
ND1 B:HIS92 2.1 10.9 1.0
SG B:CYS89 2.2 11.9 1.0
HB2 B:HIS92 2.8 13.7 1.0
SD B:MET97 2.8 14.6 1.0
CE1 B:HIS39 2.9 13.5 1.0
HA B:HIS39 2.9 14.8 1.0
HE1 B:HIS39 3.0 12.7 1.0
CE1 B:HIS92 3.0 19.0 1.0
CG B:HIS92 3.1 17.5 1.0
CG B:HIS39 3.1 11.2 1.0
HB3 B:CYS89 3.1 11.4 1.0
CB B:CYS89 3.2 10.8 1.0
HE1 B:HIS92 3.2 15.0 1.0
HB2 B:CYS89 3.3 11.4 1.0
HB3 B:HIS39 3.4 14.4 1.0
CB B:HIS92 3.4 12.6 1.0
HE3 B:MET97 3.6 20.1 1.0
CB B:HIS39 3.6 12.7 1.0
O B:PRO38 3.6 15.7 1.0
CA B:HIS39 3.6 16.1 1.0
CE B:MET97 3.7 22.6 1.0
H B:HIS92 3.8 12.5 1.0
HE2 B:MET97 3.8 20.1 1.0
HB2 B:PRO91 4.0 17.2 1.0
HB3 B:HIS92 4.1 13.7 1.0
NE2 B:HIS39 4.1 11.1 1.0
CG B:MET97 4.2 12.1 1.0
HG2 B:MET97 4.2 13.3 1.0
NE2 B:HIS92 4.2 15.0 1.0
H B:ASN40 4.2 13.7 1.0
CD2 B:HIS39 4.2 13.3 1.0
CD2 B:HIS92 4.2 15.2 1.0
HG2 B:PRO91 4.2 16.4 1.0
N B:HIS92 4.3 11.7 1.0
HB3 B:MET97 4.3 13.1 1.0
HD2 B:PRO91 4.4 15.4 1.0
C B:PRO38 4.4 16.1 1.0
N B:HIS39 4.5 16.0 1.0
CA B:HIS92 4.5 13.4 1.0
HB2 B:HIS39 4.5 14.4 1.0
HE1 B:MET97 4.6 20.1 1.0
CA B:CYS89 4.6 11.6 1.0
HD23 B:LEU14 4.6 18.2 1.0
HB2 B:MET97 4.6 13.1 1.0
CB B:MET97 4.7 14.7 1.0
N B:ASN40 4.7 14.9 1.0
C B:HIS39 4.8 12.7 1.0
CB B:PRO91 4.8 18.4 1.0
HD21 B:LEU14 4.8 18.2 1.0
CG B:PRO91 4.8 17.1 1.0
HG3 B:MET97 4.9 13.3 1.0
HA B:CYS89 5.0 12.6 1.0

Reference:

B.A.Fields, A.P.Duff, K.Govinderaju, M.P.Jackman, H.W.Lee, W.B.Church, J.M.Guss, A.G.Sykes, H.C.Freeman. The Crystal Structure and Electron-Transfer Reactivity of Plastocyanin From A Cyanobacterium, Anabaena Variabilis To Be Published.
Page generated: Thu Sep 3 16:33:58 2020
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