Atomistry » Copper » PDB 2aps-2cg1 » 2c9p
Atomistry »
  Copper »
    PDB 2aps-2cg1 »
      2c9p »

Copper in PDB 2c9p: Cu(I)Cu(II)-Copc at pH 4.5

Protein crystallography data

The structure of Cu(I)Cu(II)-Copc at pH 4.5, PDB code: 2c9p was solved by L.Zhang, M.Koay, M.J.Maher, Z.Xiao, A.G.Wedd, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.25
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 104.510, 104.510, 55.519, 90.00, 90.00, 120.00
R / Rfree (%) 19 / 26.4

Copper Binding Sites:

The binding sites of Copper atom in the Cu(I)Cu(II)-Copc at pH 4.5 (pdb code 2c9p). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 6 binding sites of Copper where determined in the Cu(I)Cu(II)-Copc at pH 4.5, PDB code: 2c9p:
Jump to Copper binding site number: 1; 2; 3; 4; 5; 6;

Copper binding site 1 out of 6 in 2c9p

Go back to Copper Binding Sites List in 2c9p
Copper binding site 1 out of 6 in the Cu(I)Cu(II)-Copc at pH 4.5


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Cu(I)Cu(II)-Copc at pH 4.5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu1103

b:40.9
occ:1.00
SD A:MET46 2.2 32.0 1.0
SD B:MET40 2.3 28.8 1.0
SD A:MET43 2.4 34.7 1.0
SD B:MET51 2.5 37.3 1.0
CE A:MET46 3.3 29.2 1.0
CE A:MET43 3.3 37.5 1.0
CG A:MET43 3.4 33.8 1.0
CG B:MET51 3.4 25.4 1.0
CE B:MET51 3.4 48.8 1.0
CE B:MET40 3.4 32.0 1.0
CG A:MET46 3.5 29.4 1.0
CG B:MET40 3.5 31.1 1.0
CB B:MET40 3.7 31.9 1.0
CB A:MET46 3.8 32.4 1.0
SD B:MET43 4.6 34.0 1.0
CB B:MET51 4.8 24.6 1.0
CB A:MET43 4.8 35.2 1.0

Copper binding site 2 out of 6 in 2c9p

Go back to Copper Binding Sites List in 2c9p
Copper binding site 2 out of 6 in the Cu(I)Cu(II)-Copc at pH 4.5


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Cu(I)Cu(II)-Copc at pH 4.5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu1104

b:59.2
occ:1.00
NE2 A:HIS1 2.0 66.2 1.0
ND1 A:HIS91 2.2 33.7 1.0
O A:HOH2004 2.3 42.5 1.0
CD2 A:HIS1 2.9 59.8 1.0
CE1 A:HIS1 3.0 70.8 1.0
CG A:HIS91 3.1 41.0 1.0
CE1 A:HIS91 3.2 46.0 1.0
CB A:HIS91 3.3 40.2 1.0
N A:HIS91 4.0 42.3 1.0
ND1 A:HIS1 4.1 63.0 1.0
CG A:HIS1 4.1 59.7 1.0
CA A:HIS91 4.2 40.5 1.0
CD2 A:HIS91 4.2 44.1 1.0
NE2 A:HIS91 4.3 31.0 1.0
O A:HOH2003 4.3 46.2 1.0
CG2 A:THR90 4.9 49.4 1.0
O A:HIS91 5.0 36.7 1.0

Copper binding site 3 out of 6 in 2c9p

Go back to Copper Binding Sites List in 2c9p
Copper binding site 3 out of 6 in the Cu(I)Cu(II)-Copc at pH 4.5


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Cu(I)Cu(II)-Copc at pH 4.5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu1105

b:37.6
occ:1.00
SD B:MET46 2.2 33.8 1.0
SD A:MET51 2.3 32.3 1.0
SD B:MET43 2.4 34.0 1.0
SD A:MET40 2.4 34.8 1.0
CG B:MET43 3.2 24.0 1.0
CE B:MET43 3.3 33.0 1.0
CE A:MET40 3.3 47.5 1.0
CE A:MET51 3.3 47.4 1.0
CE B:MET46 3.4 40.1 1.0
CG A:MET51 3.4 33.9 1.0
CG B:MET46 3.5 41.9 1.0
CG A:MET40 3.6 38.8 1.0
CB A:MET40 3.7 34.8 1.0
CB B:MET46 3.8 39.0 1.0
SD A:MET43 4.5 34.7 1.0
CB B:MET43 4.6 28.5 1.0
CB A:MET51 4.8 31.0 1.0

Copper binding site 4 out of 6 in 2c9p

Go back to Copper Binding Sites List in 2c9p
Copper binding site 4 out of 6 in the Cu(I)Cu(II)-Copc at pH 4.5


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Cu(I)Cu(II)-Copc at pH 4.5 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu1103

b:58.5
occ:1.00
NE2 B:HIS1 2.0 58.2 1.0
ND1 B:HIS91 2.2 36.9 1.0
O B:HOH2003 2.7 36.9 1.0
CE1 B:HIS1 2.9 61.4 1.0
CD2 B:HIS1 3.0 53.4 1.0
CG B:HIS91 3.1 33.9 1.0
CB B:HIS91 3.2 32.4 1.0
CE1 B:HIS91 3.3 28.4 1.0
N B:HIS91 3.9 35.1 1.0
ND1 B:HIS1 4.1 55.9 1.0
CG B:HIS1 4.1 54.4 1.0
CA B:HIS91 4.2 33.2 1.0
CD2 B:HIS91 4.3 31.9 1.0
NE2 B:HIS91 4.3 42.3 1.0
CG2 B:THR90 4.7 33.8 1.0
O B:HIS91 4.9 30.5 1.0

Copper binding site 5 out of 6 in 2c9p

Go back to Copper Binding Sites List in 2c9p
Copper binding site 5 out of 6 in the Cu(I)Cu(II)-Copc at pH 4.5


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 5 of Cu(I)Cu(II)-Copc at pH 4.5 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cu1103

b:39.2
occ:1.00
SD C:MET46 2.3 31.9 1.0
SD C:MET43 2.3 32.6 1.0
CE C:MET43 3.2 42.0 1.0
CG C:MET43 3.3 34.3 1.0
CE C:MET46 3.4 35.4 1.0
CG C:MET46 3.5 35.8 1.0
CB C:MET46 3.9 29.7 1.0
CB C:MET43 4.7 37.6 1.0

Copper binding site 6 out of 6 in 2c9p

Go back to Copper Binding Sites List in 2c9p
Copper binding site 6 out of 6 in the Cu(I)Cu(II)-Copc at pH 4.5


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 6 of Cu(I)Cu(II)-Copc at pH 4.5 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cu1104

b:69.2
occ:1.00
NE2 C:HIS1 2.1 66.7 1.0
ND1 C:HIS91 2.4 39.9 1.0
O C:HOH2002 2.7 52.2 1.0
CE1 C:HIS1 3.0 63.3 1.0
CD2 C:HIS1 3.1 62.3 1.0
CG C:HIS91 3.2 37.7 1.0
CB C:HIS91 3.3 35.0 1.0
CE1 C:HIS91 3.5 42.3 1.0
ND1 C:HIS1 4.1 63.7 1.0
N C:HIS91 4.2 41.3 1.0
CG C:HIS1 4.2 62.9 1.0
CA C:HIS91 4.4 35.5 1.0
CD2 C:HIS91 4.4 49.2 1.0
NE2 C:HIS91 4.5 50.0 1.0
CG2 C:THR90 5.0 42.1 1.0

Reference:

L.Zhang, M.Koay, M.J.Maher, Z.Xiao, A.G.Wedd. Intermolecular Transfer of Copper Ions From the Copc Protein of Pseudomonas Syringae. Crystal Structures of Fully Loaded Cu(I)Cu(II) Forms. J.Am.Chem.Soc. V. 128 5834 2006.
ISSN: ISSN 0002-7863
PubMed: 16637653
DOI: 10.1021/JA058528X
Page generated: Sun Dec 13 11:03:50 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy